Personal tools

UBERON:0002791: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(4 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0002791
|alt_id=UBERON:NIF_GrossAnatomy_birnlex_1700-FMA_62374
|name=regional part of telencephalon
|anatomical_img_id=FMA:62374
|namespace=
|def="A regional part of brain that is part of a telencephalon [Obol]." [OBOL:automatic]
|xref=FMA:62374;;NIF_GrossAnatomy:birnlex_1700
|is_a=UBERON:0002780
|synonym="anatomical structure of brain of telencephalon" EXACT [OBOL:automatic];;"biological structure of brain of telencephalon" EXACT [OBOL:automatic];;"brain anatomical structure of telencephalon" EXACT [OBOL:automatic];;"brain biological structure of telencephalon" EXACT [OBOL:automatic];;"neuraxis segment of telencephalon" EXACT [OBOL:automatic];;"regional part of brain of telencephalon" EXACT [OBOL:automatic];;"segment of brain of telencephalon" EXACT [OBOL:automatic];;"segment of telencephalon" EXACT [NIF_GrossAnatomy:birnlex_1700];;"telencephalon anatomical structure of brain" EXACT [OBOL:automatic];;"telencephalon biological structure of brain" EXACT [OBOL:automatic];;"telencephalon brain anatomical structure" EXACT [OBOL:automatic];;"telencephalon brain biological structure" EXACT [OBOL:automatic];;"telencephalon neuraxis segment" EXACT [OBOL:automatic];;"telencephalon regional part of brain" EXACT [OBOL:automatic];;"telencephalon segment" EXACT [FMA:62374];;"telencephalon segment of brain" EXACT [OBOL:automatic]
|comment=
|comment=
|alt_id=UBERON:NIF_GrossAnatomy_birnlex_1700-FMA_62374
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A regional part of brain that is part of a telencephalon [Obol]." [OBOL:automatic]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0002791
|is_a=UBERON:0002780 ;;UBERON:0010314
|is_obsolete=
|located_in=
|located_in=
|name=regional part of telencephalon
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0001893
|part_of=UBERON:0001893
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="anatomical structure of brain of telencephalon" EXACT [OBOL:automatic];;"biological structure of brain of telencephalon" EXACT [OBOL:automatic];;"brain anatomical structure of telencephalon" EXACT [OBOL:automatic];;"brain biological structure of telencephalon" EXACT [OBOL:automatic];;"neuraxis segment of telencephalon" EXACT [OBOL:automatic];;"regional part of brain of telencephalon" EXACT [OBOL:automatic];;"segment of brain of telencephalon" EXACT [OBOL:automatic];;"segment of telencephalon" EXACT [NIF_GrossAnatomy:birnlex_1700];;"telencephalon anatomical structure of brain" EXACT [OBOL:automatic];;"telencephalon biological structure of brain" EXACT [OBOL:automatic];;"telencephalon brain anatomical structure" EXACT [OBOL:automatic];;"telencephalon brain biological structure" EXACT [OBOL:automatic];;"telencephalon neuraxis segment" EXACT [OBOL:automatic];;"telencephalon regional part of brain" EXACT [OBOL:automatic];;"telencephalon segment" EXACT [FMA:62374];;"telencephalon segment of brain" EXACT [OBOL:automatic]
|union_of=
|xref=FMA:62374;;NIF_GrossAnatomy:birnlex_1700
}}
}}

Latest revision as of 17:35, 12 September 2014

Name:regional part of telencephalon
Namespace:FANTOM
Definition:"A regional part of brain that is part of a telencephalon [Obol]." [OBOL:automatic]
Xrefs:
links:

FMA:62374

NIF_GrossAnatomy:birnlex_1700
Synonyms: "anatomical structure of brain of telencephalon" EXACT [OBOL:automatic]
"biological structure of brain of telencephalon" EXACT [OBOL:automatic]
"brain anatomical structure of telencephalon" EXACT [OBOL:automatic]
"brain biological structure of telencephalon" EXACT [OBOL:automatic]
"neuraxis segment of telencephalon" EXACT [OBOL:automatic]
"regional part of brain of telencephalon" EXACT [OBOL:automatic]
"segment of brain of telencephalon" EXACT [OBOL:automatic]
"segment of telencephalon" EXACT [NIF_GrossAnatomy:birnlex_1700]
"telencephalon anatomical structure of brain" EXACT [OBOL:automatic]
"telencephalon biological structure of brain" EXACT [OBOL:automatic]
"telencephalon brain anatomical structure" EXACT [OBOL:automatic]
"telencephalon brain biological structure" EXACT [OBOL:automatic]
"telencephalon neuraxis segment" EXACT [OBOL:automatic]
"telencephalon regional part of brain" EXACT [OBOL:automatic]
"telencephalon segment" EXACT [FMA:62374]
"telencephalon segment of brain" EXACT [OBOL:automatic]
Alt_id: UBERON:NIF_GrossAnatomy_birnlex_1700-FMA_62374

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002780(regional part of forebrain),UBERON:0010314(structure with developmental contribution from neural crest)
part_of:UBERON:0001893(telencephalon)



Children

is a:UBERON:0000203 (pallium),UBERON:0000204 (ventral part of telencephalon),UBERON:0001954 (Ammon's horn),UBERON:0002421 (hippocampal formation),UBERON:0002619 (regional part of cerebral cortex),UBERON:0005366 (olfactory lobe)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002791 (regional part of telencephalon), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
6.19e-122FFCP PHASE2:Hg19::chr12:14133429..14133438,-#_631f05ff86f5231fe28f5b6a9e59365ep3@GRIN2B
6.19e-122FFCP PHASE1:Hg19::chr12:14133429..14133438,-#_631f05ff86f5231fe28f5b6a9e59365ep3@GRIN2B
1.56e-120FFCP PHASE2:Hg19::chr20:1975321..1975338,-#_71fdc5acdd5cdc5f9f94f91c0a9e1275p3@PDYN
1.56e-120FFCP PHASE1:Hg19::chr20:1975321..1975338,-#_71fdc5acdd5cdc5f9f94f91c0a9e1275p3@PDYN
2.81e-118FFCP PHASE1:Hg19::chr11:49582389..49582417,+#_e63702e7da1db5238dd8263fd2cf93c5p1@ENST00000527477, p1@ENST00000530858
2.81e-118FFCP PHASE2:Hg19::chr11:49582389..49582417,+#_e63702e7da1db5238dd8263fd2cf93c5p1@ENST00000527477, p1@ENST00000530858
7.36e-118FFCP PHASE1:Hg19::chr5:80255907..80255942,+#_3d10753ba7fa4280bb959937828a0acdp@chr5:80255907..80255942, +
7.36e-118FFCP PHASE2:Hg19::chr5:80255907..80255942,+#_3d10753ba7fa4280bb959937828a0acdp@chr5:80255907..80255942, +
2.39e-117FFCP PHASE1:Hg19::chr6:108487289..108487302,+#_8f4d04b275e205eb8568849bd2022acfp1@NR2E1
2.39e-117FFCP PHASE2:Hg19::chr6:108487289..108487302,+#_8f4d04b275e205eb8568849bd2022acfp1@NR2E1
1.59e-116FFCP PHASE2:Hg19::chr12:11652664..11652681,+#_3f376f04e7ca9ed7a24d40f6362c81adp@chr12:11652664..11652681, +
1.59e-116FFCP PHASE1:Hg19::chr12:11652664..11652681,+#_3f376f04e7ca9ed7a24d40f6362c81adp@chr12:11652664..11652681, +
3.67e-116FFCP PHASE1:Hg19::chr4:6474472..6474528,-#_355ded625dfb60d4929c12d4a57f5486p6@PPP2R2C
3.67e-116FFCP PHASE1:Hg19::chr5:27038708..27038730,-#_355ded625dfb60d4929c12d4a57f5486p2@CDH9
3.67e-116FFCP PHASE2:Hg19::chr5:27038708..27038730,-#_355ded625dfb60d4929c12d4a57f5486p2@CDH9
3.67e-116FFCP PHASE2:Hg19::chr4:6474472..6474528,-#_355ded625dfb60d4929c12d4a57f5486p6@PPP2R2C
2.19e-115FFCP PHASE1:Hg19::chr1:70033108..70033121,+#_f2fecdf179b6674d4ff8f11846af51bep8@LRRC7
2.19e-115FFCP PHASE2:Hg19::chr1:70033108..70033121,+#_f2fecdf179b6674d4ff8f11846af51bep8@LRRC7
2.25e-115FFCP PHASE2:Hg19::chr11:89867681..89867695,+#_7fc0baeb1032ac002bcdbfe2ae5435a9p2@NAALAD2
2.25e-115FFCP PHASE1:Hg19::chr11:89867681..89867695,+#_7fc0baeb1032ac002bcdbfe2ae5435a9p2@NAALAD2
3.0e-115FFCP PHASE1:Hg19::chr11:132982177..132982181,-#_42c15ad231d63273cdf90eb334ba1c08p@chr11:132982177..132982181, -
3.0e-115FFCP PHASE2:Hg19::chr11:132982177..132982181,-#_42c15ad231d63273cdf90eb334ba1c08p@chr11:132982177..132982181, -
4.15e-115FFCP PHASE1:Hg19::chr6:155538093..155538109,+#_50dba1381c94c63065e81f9be9e6e307p2@TIAM2
4.15e-115FFCP PHASE2:Hg19::chr6:155538093..155538109,+#_50dba1381c94c63065e81f9be9e6e307p2@TIAM2
5.99e-115FFCP PHASE1:Hg19::chr19:54462560..54462571,+#_126938f1041daf6b0bfd4ec198429317p@chr19:54462560..54462571, +
5.99e-115FFCP PHASE2:Hg19::chr19:54462560..54462571,+#_126938f1041daf6b0bfd4ec198429317p@chr19:54462560..54462571, +
1.59e-114FFCP PHASE2:Hg19::chr20:1975298..1975316,-#_f2d46dc0fb2e237d0c192f843305104ep2@PDYN
1.59e-114FFCP PHASE1:Hg19::chr20:1975298..1975316,-#_f2d46dc0fb2e237d0c192f843305104ep2@PDYN
2.03e-114FFCP PHASE2:Hg19::chr4:46392290..46392324,-#_2b8b303e5c214b05f3a3ec24cb517f5ep13@GABRA2
2.03e-114FFCP PHASE1:Hg19::chr4:46392290..46392324,-#_2b8b303e5c214b05f3a3ec24cb517f5ep13@GABRA2
3.81e-114FFCP PHASE1:Hg19::chr12:14133820..14133830,-#_49d34443a1eb21685bc6d931b9f83c92p@chr12:14133820..14133830, -
3.81e-114FFCP PHASE2:Hg19::chr12:14133820..14133830,-#_49d34443a1eb21685bc6d931b9f83c92p@chr12:14133820..14133830, -
1.47e-113FFCP PHASE1:Hg19::chr19:54462732..54462743,+#_0f654c8c4657b0be1f01aea9b9381bacp@chr19:54462732..54462743, +
1.47e-113FFCP PHASE2:Hg19::chr19:54462732..54462743,+#_0f654c8c4657b0be1f01aea9b9381bacp@chr19:54462732..54462743, +
1.75e-113FFCP PHASE1:Hg19::chr2:196990526..196990535,-#_debe8b33362c8c69873b95f8e098d93dp@chr2:196990526..196990535, -
1.75e-113FFCP PHASE2:Hg19::chr2:196990526..196990535,-#_debe8b33362c8c69873b95f8e098d93dp@chr2:196990526..196990535, -
3.36e-113FFCP PHASE1:Hg19::chr6:12717031..12717057,+#_ebfd030de43a38d4f858311c3c620b71p5@PHACTR1
3.36e-113FFCP PHASE2:Hg19::chr6:12717031..12717057,+#_ebfd030de43a38d4f858311c3c620b71p5@PHACTR1
4.26e-113FFCP PHASE2:Hg19::chr10:10504464..10504475,+#_3393150407307b22e1f775fbc8507a17p@chr10:10504464..10504475, +
4.26e-113FFCP PHASE1:Hg19::chr10:10504464..10504475,+#_3393150407307b22e1f775fbc8507a17p@chr10:10504464..10504475, +
4.73e-113FFCP PHASE1:Hg19::chr12:49931764..49931791,+#_dec6e53fc6d655709e3a985cb561469cp@chr12:49931764..49931791, +
4.73e-113FFCP PHASE2:Hg19::chr12:49931764..49931791,+#_dec6e53fc6d655709e3a985cb561469cp@chr12:49931764..49931791, +
5.78e-113FFCP PHASE2:Hg19::chr4:46995726..46995765,+#_c9987155e56b8da40185d05dc48fb234p5@GABRB1
5.78e-113FFCP PHASE1:Hg19::chr4:46995726..46995765,+#_c9987155e56b8da40185d05dc48fb234p5@GABRB1
5.91e-113FFCP PHASE1:Hg19::chr12:99548410..99548419,-#_ec168d3bd454dd55d660396e9cec6eb3p15@ANKS1B
5.91e-113FFCP PHASE2:Hg19::chr12:99548410..99548419,-#_ec168d3bd454dd55d660396e9cec6eb3p15@ANKS1B
7.11e-113FFCP PHASE1:Hg19::chr16:30418387..30418422,+#_4a6a710e20c13f25f612159d6f516300p4@ZNF771
7.11e-113FFCP PHASE2:Hg19::chr16:30418387..30418422,+#_4a6a710e20c13f25f612159d6f516300p4@ZNF771
8.17e-113FFCP PHASE2:Hg19::chr4:6514469..6514483,-#_dbde60f2b726f4eb7003027002bbcaf2p@chr4:6514469..6514483, -
8.17e-113FFCP PHASE1:Hg19::chr4:6514469..6514483,-#_dbde60f2b726f4eb7003027002bbcaf2p@chr4:6514469..6514483, -
9.49e-113FFCP PHASE1:Hg19::chr17:9929636..9929643,-#_391890ce9cbb158c432e621f1708d914p24@GAS7
9.49e-113FFCP PHASE2:Hg19::chr17:9929636..9929643,-#_391890ce9cbb158c432e621f1708d914p24@GAS7
3.94e-112FFCP PHASE2:Hg19::chr19:35633957..35633969,+#_0cf2fcd0f1afce892fb7e1b8ef3d33dep2@FXYD7
3.94e-112FFCP PHASE1:Hg19::chr19:35633957..35633969,+#_0cf2fcd0f1afce892fb7e1b8ef3d33dep2@FXYD7
6.21e-112FFCP PHASE1:Hg19::chr5:160975135..160975218,-#_dd47aa284b812eb756bf820ad5e3bfc7p3@GABRB2
6.21e-112FFCP PHASE2:Hg19::chr5:160975135..160975218,-#_dd47aa284b812eb756bf820ad5e3bfc7p3@GABRB2
3.31e-111FFCP PHASE1:Hg19::chr1:70035053..70035078,+#_212f119578940c77d5ae32b98592f665p@chr1:70035053..70035078, +
3.31e-111FFCP PHASE2:Hg19::chr1:70035053..70035078,+#_212f119578940c77d5ae32b98592f665p@chr1:70035053..70035078, +
3.63e-111FFCP PHASE2:Hg19::chr16:14280496..14280512,+#_66c97d80cf407f788479b16b78ffcf98p9@MKL2
3.63e-111FFCP PHASE1:Hg19::chr16:14280496..14280512,+#_66c97d80cf407f788479b16b78ffcf98p9@MKL2
5.3e-111FFCP PHASE2:Hg19::chr2:173600214..173600253,+#_d0502efc237ea0a7f077b20b16159613p7@RAPGEF4
5.3e-111FFCP PHASE1:Hg19::chr2:173600214..173600253,+#_d0502efc237ea0a7f077b20b16159613p7@RAPGEF4
5.64e-111FFCP PHASE2:Hg19::chr12:14134636..14134651,-#_e78c541ee6ee1f878b54ccd7b5e0b44ap@chr12:14134636..14134651, -
5.64e-111FFCP PHASE1:Hg19::chr12:14134636..14134651,-#_e78c541ee6ee1f878b54ccd7b5e0b44ap@chr12:14134636..14134651, -
6.83e-111FFCP PHASE2:Hg19::chr3:123813592..123813615,+#_9920fd4d292b461136f0f4345bc61b2fp9@KALRN
6.83e-111FFCP PHASE1:Hg19::chr3:123813592..123813615,+#_9920fd4d292b461136f0f4345bc61b2fp9@KALRN
8.08e-111FFCP PHASE2:Hg19::chr19:49016319..49016405,-#_e9f4a9099958ea42c58f8f91ccdf7bf4p2@LMTK3
8.08e-111FFCP PHASE1:Hg19::chr19:49016319..49016405,-#_e9f4a9099958ea42c58f8f91ccdf7bf4p2@LMTK3
8.37e-111FFCP PHASE2:Hg19::chr10:11047712..11047726,+#_472c397d539e283d9cce2b76661e3ef4p@chr10:11047712..11047726, +
8.37e-111FFCP PHASE1:Hg19::chr10:11047712..11047726,+#_472c397d539e283d9cce2b76661e3ef4p@chr10:11047712..11047726, +
1.03e-110FFCP PHASE2:Hg19::chr11:133402367..133402378,-#_24ff3d18700d6cf4b1dad22dc82783e1p8@OPCML
1.03e-110FFCP PHASE1:Hg19::chr11:133402367..133402378,-#_24ff3d18700d6cf4b1dad22dc82783e1p8@OPCML
1.53e-110FFCP PHASE2:Hg19::chr16:14280513..14280524,+#_5fc3ecfb363c97fe9d25f400aad1c3b5p5@MKL2
1.53e-110FFCP PHASE1:Hg19::chr16:14280513..14280524,+#_5fc3ecfb363c97fe9d25f400aad1c3b5p5@MKL2
1.53e-110FFCP PHASE1:Hg19::chr4:6474536..6474563,-#_5fc3ecfb363c97fe9d25f400aad1c3b5p9@PPP2R2C
1.53e-110FFCP PHASE2:Hg19::chr4:6474536..6474563,-#_5fc3ecfb363c97fe9d25f400aad1c3b5p9@PPP2R2C
1.62e-110FFCP PHASE2:Hg19::chr11:133402410..133402434,-#_3903c8e3bfbf671c692bf1d20056b946p5@OPCML
1.62e-110FFCP PHASE1:Hg19::chr11:133402410..133402434,-#_3903c8e3bfbf671c692bf1d20056b946p5@OPCML
2.65e-110FFCP PHASE2:Hg19::chr1:70035018..70035044,+#_d6b89f0fed02261837dcbd7b3f20e651p@chr1:70035018..70035044, +
2.65e-110FFCP PHASE1:Hg19::chr1:70035018..70035044,+#_d6b89f0fed02261837dcbd7b3f20e651p@chr1:70035018..70035044, +
3.32e-110FFCP PHASE1:Hg19::chr12:45315625..45315636,-#_a46e2ae95265bf1bb881018522be55dep7@NELL2
3.32e-110FFCP PHASE2:Hg19::chr12:45315625..45315636,-#_a46e2ae95265bf1bb881018522be55dep7@NELL2
5.26e-110FFCP PHASE1:Hg19::chr12:99548462..99548482,-#_bed46712776438e67949db0d2c6b9021p9@ANKS1B
5.26e-110FFCP PHASE2:Hg19::chr12:99548462..99548482,-#_bed46712776438e67949db0d2c6b9021p9@ANKS1B
6.05e-110FFCP PHASE1:Hg19::chr10:104178839..104178855,-#_26e6450f418c6f4eaa8793edce478d49p6@PSD
6.05e-110FFCP PHASE2:Hg19::chr10:104178839..104178855,-#_26e6450f418c6f4eaa8793edce478d49p6@PSD
6.32e-110FFCP PHASE1:Hg19::chr14:24047743..24047754,-#_1488cfecce3bfe529d251ab3f2c1cd2ap12@JPH4
6.32e-110FFCP PHASE2:Hg19::chr14:24047743..24047754,-#_1488cfecce3bfe529d251ab3f2c1cd2ap12@JPH4
7.42e-110FFCP PHASE2:Hg19::chr11:84431459..84431498,-#_68ef8cd8fb253659f08e7f1683d36933p@chr11:84431459..84431498, -
7.42e-110FFCP PHASE1:Hg19::chr11:84431459..84431498,-#_68ef8cd8fb253659f08e7f1683d36933p@chr11:84431459..84431498, -
1.33e-109FFCP PHASE2:Hg19::chr12:14133348..14133359,-#_7b39374191870804876c7c8d1767b287p1@GRIN2B
1.33e-109FFCP PHASE1:Hg19::chr12:14133348..14133359,-#_7b39374191870804876c7c8d1767b287p1@GRIN2B
3.02e-109FFCP PHASE1:Hg19::chr15:30231269..30231299,-#_6537097d67c5ca766412c69850013271p@chr15:30231269..30231299, -
3.02e-109FFCP PHASE2:Hg19::chr15:30231269..30231299,-#_6537097d67c5ca766412c69850013271p@chr15:30231269..30231299, -
3.97e-109FFCP PHASE1:Hg19::chr5:89936619..89936648,+#_8a9fbef67c87e40ca88a57a571c8d064p5@GPR98
3.97e-109FFCP PHASE2:Hg19::chr5:89936619..89936648,+#_8a9fbef67c87e40ca88a57a571c8d064p5@GPR98
5.06e-109FFCP PHASE1:Hg19::chr20:61806320..61806344,+#_a4b21edc771c163788d5ba9a88d891f2p@chr20:61806320..61806344, +
5.06e-109FFCP PHASE2:Hg19::chr20:61806320..61806344,+#_a4b21edc771c163788d5ba9a88d891f2p@chr20:61806320..61806344, +
5.57e-109FFCP PHASE2:Hg19::chr19:54462535..54462548,+#_ab629a940e557dacc29c66ed63336d24p@chr19:54462535..54462548, +
5.57e-109FFCP PHASE1:Hg19::chr19:54462535..54462548,+#_ab629a940e557dacc29c66ed63336d24p@chr19:54462535..54462548, +

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0002791&oldid=3277490"