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{{UBERON
{{UBERON
|id=UBERON:0002757
|alt_id=UBERON:NIF_GrossAnatomy_birnlex_1607-FMA_62013
|name=regional part of epithalamus
|namespace=
|def="A regional part of brain that is part of a epithalamus [Obol]." [OBOL:automatic]
|xref=FMA:62013;;NIF_GrossAnatomy:birnlex_1607
|is_a=UBERON:0002784
|synonym="anatomical structure of brain of epithalamus" EXACT [OBOL:automatic];;"biological structure of brain of epithalamus" EXACT [OBOL:automatic];;"brain anatomical structure of epithalamus" EXACT [OBOL:automatic];;"brain biological structure of epithalamus" EXACT [OBOL:automatic];;"epithalamus anatomical structure of brain" EXACT [OBOL:automatic];;"epithalamus biological structure of brain" EXACT [OBOL:automatic];;"epithalamus brain anatomical structure" EXACT [OBOL:automatic];;"epithalamus brain biological structure" EXACT [OBOL:automatic];;"epithalamus neuraxis segment" EXACT [OBOL:automatic];;"epithalamus regional part of brain" EXACT [OBOL:automatic];;"epithalamus segment" EXACT [FMA:62013];;"epithalamus segment of brain" EXACT [OBOL:automatic];;"neuraxis segment of epithalamus" EXACT [OBOL:automatic];;"regional part of brain of epithalamus" EXACT [OBOL:automatic];;"segment of brain of epithalamus" EXACT [OBOL:automatic];;"segment of epithalamus" EXACT [NIF_GrossAnatomy:birnlex_1607]
|comment=
|comment=
|alt_id=UBERON:NIF_GrossAnatomy_birnlex_1607-FMA_62013
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A regional part of brain that is part of a epithalamus [Obol]." [OBOL:automatic]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0002757
|is_a=UBERON:0002784
|is_obsolete=
|located_in=
|located_in=
|name=regional part of epithalamus
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0001899
|part_of=UBERON:0001899
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="anatomical structure of brain of epithalamus" EXACT [OBOL:automatic];;"biological structure of brain of epithalamus" EXACT [OBOL:automatic];;"brain anatomical structure of epithalamus" EXACT [OBOL:automatic];;"brain biological structure of epithalamus" EXACT [OBOL:automatic];;"epithalamus anatomical structure of brain" EXACT [OBOL:automatic];;"epithalamus biological structure of brain" EXACT [OBOL:automatic];;"epithalamus brain anatomical structure" EXACT [OBOL:automatic];;"epithalamus brain biological structure" EXACT [OBOL:automatic];;"epithalamus neuraxis segment" EXACT [OBOL:automatic];;"epithalamus regional part of brain" EXACT [OBOL:automatic];;"epithalamus segment" EXACT [FMA:62013];;"epithalamus segment of brain" EXACT [OBOL:automatic];;"neuraxis segment of epithalamus" EXACT [OBOL:automatic];;"regional part of brain of epithalamus" EXACT [OBOL:automatic];;"segment of brain of epithalamus" EXACT [OBOL:automatic];;"segment of epithalamus" EXACT [NIF_GrossAnatomy:birnlex_1607]
|union_of=
|xref=FMA:62013;;NIF_GrossAnatomy:birnlex_1607
}}
}}

Latest revision as of 17:34, 12 September 2014

Name:regional part of epithalamus
Namespace:FANTOM
Definition:"A regional part of brain that is part of a epithalamus [Obol]." [OBOL:automatic]
Xrefs:
links:

FMA:62013

NIF_GrossAnatomy:birnlex_1607
Synonyms: "anatomical structure of brain of epithalamus" EXACT [OBOL:automatic]
"biological structure of brain of epithalamus" EXACT [OBOL:automatic]
"brain anatomical structure of epithalamus" EXACT [OBOL:automatic]
"brain biological structure of epithalamus" EXACT [OBOL:automatic]
"epithalamus anatomical structure of brain" EXACT [OBOL:automatic]
"epithalamus biological structure of brain" EXACT [OBOL:automatic]
"epithalamus brain anatomical structure" EXACT [OBOL:automatic]
"epithalamus brain biological structure" EXACT [OBOL:automatic]
"epithalamus neuraxis segment" EXACT [OBOL:automatic]
"epithalamus regional part of brain" EXACT [OBOL:automatic]
"epithalamus segment" EXACT [FMA:62013]
"epithalamus segment of brain" EXACT [OBOL:automatic]
"neuraxis segment of epithalamus" EXACT [OBOL:automatic]
"regional part of brain of epithalamus" EXACT [OBOL:automatic]
"segment of brain of epithalamus" EXACT [OBOL:automatic]
"segment of epithalamus" EXACT [NIF_GrossAnatomy:birnlex_1607]
Alt_id: UBERON:NIF_GrossAnatomy_birnlex_1607-FMA_62013

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002784(regional part of diencephalon)
part_of:UBERON:0001899(epithalamus)



Children

is a:UBERON:0001905 (pineal body)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002757 (regional part of epithalamus), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.29e-195FFCP PHASE2:Hg19::chr17:74463567..74463574,+#_9fff67266e304a13f2133c4d8e21ddbep4@AANAT
3.29e-195FFCP PHASE1:Hg19::chr8:135472861..135472868,-#_9fff67266e304a13f2133c4d8e21ddbep@chr8:135472861..135472868, -
3.29e-195FFCP PHASE2:Hg19::chr1:13820103..13820109,+#_9fff67266e304a13f2133c4d8e21ddbep@chr1:13820103..13820109, +
3.29e-195FFCP PHASE1:Hg19::chr6:13009334..13009341,-#_9fff67266e304a13f2133c4d8e21ddbep@chr6:13009334..13009341, -
3.29e-195FFCP PHASE1:Hg19::chr12:60826120..60826127,+#_9fff67266e304a13f2133c4d8e21ddbep@chr12:60826120..60826127, +
3.29e-195FFCP PHASE2:Hg19::chr1:57914395..57914398,+#_9fff67266e304a13f2133c4d8e21ddbep@chr1:57914395..57914398, +
3.29e-195FFCP PHASE1:Hg19::chr16:18036005..18036011,-#_9fff67266e304a13f2133c4d8e21ddbep@chr16:18036005..18036011, -
3.29e-195FFCP PHASE1:Hg19::chr12:121088132..121088135,+#_9fff67266e304a13f2133c4d8e21ddbep15@CABP1
3.29e-195FFCP PHASE1:Hg19::chr11:18039672..18039678,-#_9fff67266e304a13f2133c4d8e21ddbep@chr11:18039672..18039678, -
3.29e-195FFCP PHASE1:Hg19::chr1:154540028..154540037,+#_9fff67266e304a13f2133c4d8e21ddbep4@CHRNB2
3.29e-195FFCP PHASE1:Hg19::chr13:52650486..52650491,-#_9fff67266e304a13f2133c4d8e21ddbep@chr13:52650486..52650491, -
3.29e-195FFCP PHASE2:Hg19::chr17:55484129..55484139,+#_9fff67266e304a13f2133c4d8e21ddbep@chr17:55484129..55484139, +
3.29e-195FFCP PHASE2:Hg19::chr7:9202487..9202498,-#_9fff67266e304a13f2133c4d8e21ddbep@chr7:9202487..9202498, -
3.29e-195FFCP PHASE2:Hg19::chr16:50898038..50898042,-#_9fff67266e304a13f2133c4d8e21ddbep@chr16:50898038..50898042, -
3.29e-195FFCP PHASE2:Hg19::chr3:54952412..54952416,-#_9fff67266e304a13f2133c4d8e21ddbep@chr3:54952412..54952416, -
3.29e-195FFCP PHASE2:Hg19::chr10:80984180..80984190,-#_9fff67266e304a13f2133c4d8e21ddbep@chr10:80984180..80984190, -
3.29e-195FFCP PHASE1:Hg19::chr16:50898098..50898107,-#_9fff67266e304a13f2133c4d8e21ddbep@chr16:50898098..50898107, -
3.29e-195FFCP PHASE1:Hg19::chr8:116085391..116085419,+#_9fff67266e304a13f2133c4d8e21ddbep@chr8:116085391..116085419, +
3.29e-195FFCP PHASE2:Hg19::chr2:17141934..17141935,+#_9fff67266e304a13f2133c4d8e21ddbep@chr2:17141934..17141935, +
3.29e-195FFCP PHASE2:Hg19::chr1:99860883..99860921,-#_9fff67266e304a13f2133c4d8e21ddbep@chr1:99860883..99860921, -
3.29e-195FFCP PHASE2:Hg19::chr8:135473472..135473477,-#_9fff67266e304a13f2133c4d8e21ddbep@chr8:135473472..135473477, -
3.29e-195FFCP PHASE2:Hg19::chr11:18053180..18053192,-#_9fff67266e304a13f2133c4d8e21ddbep@chr11:18053180..18053192, -
3.29e-195FFCP PHASE1:Hg19::chr1:204667243..204667248,+#_9fff67266e304a13f2133c4d8e21ddbep@chr1:204667243..204667248, +
3.29e-195FFCP PHASE2:Hg19::chr7:9178350..9178369,-#_9fff67266e304a13f2133c4d8e21ddbep@chr7:9178350..9178369, -
3.29e-195FFCP PHASE1:Hg19::chr11:18042584..18042593,-#_9fff67266e304a13f2133c4d8e21ddbep@chr11:18042584..18042593, -
3.29e-195FFCP PHASE2:Hg19::chr8:135504314..135504320,-#_9fff67266e304a13f2133c4d8e21ddbep@chr8:135504314..135504320, -
3.29e-195FFCP PHASE2:Hg19::chr7:36878535..36878540,+#_9fff67266e304a13f2133c4d8e21ddbep4@ENST00000439998
3.29e-195FFCP PHASE2:Hg19::chr14:57197193..57197194,-#_9fff67266e304a13f2133c4d8e21ddbep1@ENST00000554597
3.29e-195FFCP PHASE1:Hg19::chr2:17185958..17185998,+#_9fff67266e304a13f2133c4d8e21ddbep@chr2:17185958..17185998, +
3.29e-195FFCP PHASE1:Hg19::chr3:17085717..17085733,-#_9fff67266e304a13f2133c4d8e21ddbep2@PLCL2-AS1
3.29e-195FFCP PHASE2:Hg19::chr3:139938385..139938390,+#_9fff67266e304a13f2133c4d8e21ddbep@chr3:139938385..139938390, +
3.29e-195FFCP PHASE1:Hg19::chrX:146290937..146290942,+#_9fff67266e304a13f2133c4d8e21ddbep@chrX:146290937..146290942, +
3.29e-195FFCP PHASE2:Hg19::chr2:17040158..17040170,+#_9fff67266e304a13f2133c4d8e21ddbep@chr2:17040158..17040170, +
3.29e-195FFCP PHASE2:Hg19::chr8:135473983..135473986,-#_9fff67266e304a13f2133c4d8e21ddbep@chr8:135473983..135473986, -
3.29e-195FFCP PHASE1:Hg19::chr11:72297712..72297715,-#_9fff67266e304a13f2133c4d8e21ddbep@chr11:72297712..72297715, -
3.29e-195FFCP PHASE2:Hg19::chr2:4224059..4224062,-#_9fff67266e304a13f2133c4d8e21ddbep@chr2:4224059..4224062, -
3.29e-195FFCP PHASE1:Hg19::chr8:135473205..135473218,-#_9fff67266e304a13f2133c4d8e21ddbep@chr8:135473205..135473218, -
3.29e-195FFCP PHASE2:Hg19::chr18:56963093..56963105,-#_9fff67266e304a13f2133c4d8e21ddbep@chr18:56963093..56963105, -
3.29e-195FFCP PHASE2:Hg19::chr8:87751918..87751928,-#_9fff67266e304a13f2133c4d8e21ddbep@chr8:87751918..87751928, -
3.29e-195FFCP PHASE2:Hg19::chr8:116127086..116127103,+#_9fff67266e304a13f2133c4d8e21ddbep@chr8:116127086..116127103, +
3.29e-195FFCP PHASE2:Hg19::chr7:120842768..120842790,-#_9fff67266e304a13f2133c4d8e21ddbep@chr7:120842768..120842790, -
3.29e-195FFCP PHASE1:Hg19::chr7:9186866..9186885,-#_9fff67266e304a13f2133c4d8e21ddbep@chr7:9186866..9186885, -
3.29e-195FFCP PHASE2:Hg19::chr16:51175701..51175708,-#_9fff67266e304a13f2133c4d8e21ddbep@chr16:51175701..51175708, -
3.29e-195FFCP PHASE1:Hg19::chr3:100942645..100942655,-#_9fff67266e304a13f2133c4d8e21ddbep@chr3:100942645..100942655, -
3.29e-195FFCP PHASE2:Hg19::chr2:108604491..108604499,+#_9fff67266e304a13f2133c4d8e21ddbep8@SLC5A7
3.29e-195FFCP PHASE1:Hg19::chr8:135515939..135515941,+#_9fff67266e304a13f2133c4d8e21ddbep@chr8:135515939..135515941, +
3.29e-195FFCP PHASE2:Hg19::chr16:18066345..18066365,-#_9fff67266e304a13f2133c4d8e21ddbep@chr16:18066345..18066365, -
3.29e-195FFCP PHASE1:Hg19::chr1:45782001..45782009,+#_9fff67266e304a13f2133c4d8e21ddbep@chr1:45782001..45782009, +
3.29e-195FFCP PHASE1:Hg19::chr17:6328202..6328224,-#_9fff67266e304a13f2133c4d8e21ddbep1@BC014398
3.29e-195FFCP PHASE1:Hg19::chr7:9782610..9782613,+#_9fff67266e304a13f2133c4d8e21ddbep@chr7:9782610..9782613, +
3.29e-195FFCP PHASE2:Hg19::chrX:33146501..33146521,-#_9fff67266e304a13f2133c4d8e21ddbep32@DMD
3.29e-195FFCP PHASE1:Hg19::chr11:18041206..18041211,-#_9fff67266e304a13f2133c4d8e21ddbep@chr11:18041206..18041211, -
3.29e-195FFCP PHASE2:Hg19::chr11:18067951..18067954,-#_9fff67266e304a13f2133c4d8e21ddbep@chr11:18067951..18067954, -
3.29e-195FFCP PHASE2:Hg19::chr3:107545606..107545631,-#_9fff67266e304a13f2133c4d8e21ddbep@chr3:107545606..107545631, -
3.29e-195FFCP PHASE1:Hg19::chr8:135474173..135474185,-#_9fff67266e304a13f2133c4d8e21ddbep@chr8:135474173..135474185, -
3.29e-195FFCP PHASE2:Hg19::chr7:129084265..129084288,-#_9fff67266e304a13f2133c4d8e21ddbep@chr7:129084265..129084288, -
3.29e-195FFCP PHASE1:Hg19::chr4:20985967..20985972,-#_9fff67266e304a13f2133c4d8e21ddbep28@KCNIP4
3.29e-195FFCP PHASE1:Hg19::chr1:57914395..57914398,+#_9fff67266e304a13f2133c4d8e21ddbep@chr1:57914395..57914398, +
3.29e-195FFCP PHASE1:Hg19::chr15:55470964..55470974,-#_9fff67266e304a13f2133c4d8e21ddbep@chr15:55470964..55470974, -
3.29e-195FFCP PHASE2:Hg19::chr9:37668094..37668097,+#_9fff67266e304a13f2133c4d8e21ddbep6@FRMPD1
3.29e-195FFCP PHASE2:Hg19::chr8:135515957..135515964,+#_9fff67266e304a13f2133c4d8e21ddbep@chr8:135515957..135515964, +
3.29e-195FFCP PHASE2:Hg19::chr1:45782019..45782028,+#_9fff67266e304a13f2133c4d8e21ddbep@chr1:45782019..45782028, +
3.29e-195FFCP PHASE2:Hg19::chr7:9782665..9782674,+#_9fff67266e304a13f2133c4d8e21ddbep@chr7:9782665..9782674, +
3.29e-195FFCP PHASE1:Hg19::chr1:13820103..13820109,+#_9fff67266e304a13f2133c4d8e21ddbep@chr1:13820103..13820109, +
3.29e-195FFCP PHASE2:Hg19::chr1:240177602..240177607,+#_9fff67266e304a13f2133c4d8e21ddbep17@FMN2
3.29e-195FFCP PHASE2:Hg19::chr9:88661694..88661709,-#_9fff67266e304a13f2133c4d8e21ddbep@chr9:88661694..88661709, -
3.29e-195FFCP PHASE2:Hg19::chr7:75864329..75864335,+#_9fff67266e304a13f2133c4d8e21ddbep11@SRRM3
3.29e-195FFCP PHASE2:Hg19::chr5:134871183..134871197,-#_9fff67266e304a13f2133c4d8e21ddbep3@NEUROG1
3.29e-195FFCP PHASE2:Hg19::chr11:72297717..72297725,-#_9fff67266e304a13f2133c4d8e21ddbep@chr11:72297717..72297725, -
3.29e-195FFCP PHASE2:Hg19::chr8:135499228..135499260,-#_9fff67266e304a13f2133c4d8e21ddbep@chr8:135499228..135499260, -
3.29e-195FFCP PHASE1:Hg19::chr2:17141934..17141935,+#_9fff67266e304a13f2133c4d8e21ddbep@chr2:17141934..17141935, +
3.29e-195FFCP PHASE1:Hg19::chr1:99860883..99860921,-#_9fff67266e304a13f2133c4d8e21ddbep@chr1:99860883..99860921, -
3.29e-195FFCP PHASE1:Hg19::chr8:135473472..135473477,-#_9fff67266e304a13f2133c4d8e21ddbep@chr8:135473472..135473477, -
3.29e-195FFCP PHASE2:Hg19::chr3:192894646..192894653,-#_9fff67266e304a13f2133c4d8e21ddbep2@ENST00000414895
3.29e-195FFCP PHASE1:Hg19::chr7:9202487..9202498,-#_9fff67266e304a13f2133c4d8e21ddbep@chr7:9202487..9202498, -
3.29e-195FFCP PHASE2:Hg19::chr5:119867229..119867240,+#_9fff67266e304a13f2133c4d8e21ddbep9@PRR16
3.29e-195FFCP PHASE1:Hg19::chr3:54952412..54952416,-#_9fff67266e304a13f2133c4d8e21ddbep@chr3:54952412..54952416, -
3.29e-195FFCP PHASE2:Hg19::chr11:18041194..18041197,-#_9fff67266e304a13f2133c4d8e21ddbep@chr11:18041194..18041197, -
3.29e-195FFCP PHASE2:Hg19::chr17:74463608..74463612,+#_9fff67266e304a13f2133c4d8e21ddbep5@AANAT
3.29e-195FFCP PHASE2:Hg19::chr8:135473876..135473885,-#_9fff67266e304a13f2133c4d8e21ddbep@chr8:135473876..135473885, -
3.29e-195FFCP PHASE1:Hg19::chr2:17040158..17040170,+#_9fff67266e304a13f2133c4d8e21ddbep@chr2:17040158..17040170, +
3.29e-195FFCP PHASE1:Hg19::chr14:49512240..49512248,-#_9fff67266e304a13f2133c4d8e21ddbep@chr14:49512240..49512248, -
3.29e-195FFCP PHASE1:Hg19::chr7:9178350..9178369,-#_9fff67266e304a13f2133c4d8e21ddbep@chr7:9178350..9178369, -
3.29e-195FFCP PHASE2:Hg19::chr4:1188439..1188454,-#_9fff67266e304a13f2133c4d8e21ddbep@chr4:1188439..1188454, -
3.29e-195FFCP PHASE1:Hg19::chr8:135504314..135504320,-#_9fff67266e304a13f2133c4d8e21ddbep@chr8:135504314..135504320, -
3.29e-195FFCP PHASE1:Hg19::chr7:36878535..36878540,+#_9fff67266e304a13f2133c4d8e21ddbep4@ENST00000439998
3.29e-195FFCP PHASE2:Hg19::chr16:18036005..18036011,-#_9fff67266e304a13f2133c4d8e21ddbep@chr16:18036005..18036011, -
3.29e-195FFCP PHASE2:Hg19::chr1:57914399..57914402,+#_9fff67266e304a13f2133c4d8e21ddbep@chr1:57914399..57914402, +
3.29e-195FFCP PHASE1:Hg19::chr11:18040537..18040547,-#_9fff67266e304a13f2133c4d8e21ddbep@chr11:18040537..18040547, -
3.29e-195FFCP PHASE1:Hg19::chr3:139938385..139938390,+#_9fff67266e304a13f2133c4d8e21ddbep@chr3:139938385..139938390, +
3.29e-195FFCP PHASE1:Hg19::chr13:52650530..52650533,-#_9fff67266e304a13f2133c4d8e21ddbep@chr13:52650530..52650533, -
3.29e-195FFCP PHASE2:Hg19::chr5:136699666..136699696,-#_9fff67266e304a13f2133c4d8e21ddbep@chr5:136699666..136699696, -
3.29e-195FFCP PHASE1:Hg19::chrX:33146501..33146521,-#_9fff67266e304a13f2133c4d8e21ddbep32@DMD
3.29e-195FFCP PHASE2:Hg19::chr8:135521466..135521470,+#_9fff67266e304a13f2133c4d8e21ddbep@chr8:135521466..135521470, +
3.29e-195FFCP PHASE2:Hg19::chr16:50898098..50898107,-#_9fff67266e304a13f2133c4d8e21ddbep@chr16:50898098..50898107, -
3.29e-195FFCP PHASE2:Hg19::chr3:54952420..54952425,-#_9fff67266e304a13f2133c4d8e21ddbep@chr3:54952420..54952425, -
3.29e-195FFCP PHASE1:Hg19::chr8:135473983..135473986,-#_9fff67266e304a13f2133c4d8e21ddbep@chr8:135473983..135473986, -
3.29e-195FFCP PHASE1:Hg19::chr2:4224059..4224062,-#_9fff67266e304a13f2133c4d8e21ddbep@chr2:4224059..4224062, -
3.29e-195FFCP PHASE1:Hg19::chr8:87751918..87751928,-#_9fff67266e304a13f2133c4d8e21ddbep@chr8:87751918..87751928, -
3.29e-195FFCP PHASE1:Hg19::chr8:116127086..116127103,+#_9fff67266e304a13f2133c4d8e21ddbep@chr8:116127086..116127103, +

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