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UBERON:0002495: Difference between revisions

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|located_in=
|located_in=
|name=long bone
|name=long bone
|namespace=
|namespace=FANTOM
|obo_creation_date=
|obo_creation_date=
|part_of=UBERON:0002091
|part_of=UBERON:0002091

Latest revision as of 17:33, 12 September 2014

Name:long bone
Namespace:FANTOM
Definition:"Long bone is a limb bone that is subcylindrical and has a shaft with periosteum separating the ends of the bones. Long bones are present only in the limbs[VSAO]." [VSAO:wd, Wikipedia:Long_bone]
Xrefs:
links:

BTO:0004256
FMA:7474
galen:LongBone
MA:0002802
ncithesaurus:Long_Bone
OpenCyc:Mx4rv6axr5wpEbGdrcN5Y29ycA

SCTID:332709000
Comments:Endochondral_ossification is an essential process during the rudimentary formation of long bones, with the exception of the clavicle[Wikipedia:Endochondral_ossification]. The medial and and lateral ends undergo EO, the mid-portion is formed by a process with features of EO & IO (the process is shared by the mandible)[ISBN:9780397517251]
Alt_id: UBERON:MA_0002802-FMA_7474
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0001474(bone element)
part_of:UBERON:0002091(appendicular skeleton)



Children

is a:UBERON:0003606 (limb long bone)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002495 (long bone), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data