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|located_in=
|located_in=
|name=spiral organ of cochlea
|name=spiral organ of cochlea
|namespace=
|namespace=FANTOM
|obo_creation_date=
|obo_creation_date=
|part_of=UBERON:0001855
|part_of=UBERON:0001855

Latest revision as of 17:28, 12 September 2014

Name:spiral organ of cochlea
Namespace:FANTOM
Definition:"The organ of Corti (or spiral organ) is the organ in the inner ear of mammals that contains auditory sensory cells, or 'hair cells.' [WP,unvetted]." [Wikipedia:Organ_of_Corti]
Xrefs:
links:

AAO:0011018
BTO:0001691
EFO:0001364
EMAPA:19061
EMAPA:19151
EV:0100364
FMA:75715
GAID:772
[1]
[ 200px-Cochlea-crosssection.png 200px-Cochlea-crosssection.png]
MA:0001193
ncithesaurus:Organ_of_Corti
ncithesaurus:Spiral_Organ_of_Corti
NIF_GrossAnatomy:birnlex_2526

XAO:0003145
Synonyms: "basilar papilla" RELATED [BTO:0001691]
"cochlear spiral organ" EXACT []
"Corti's organ" RELATED [BTO:0001691]
"organ of corti" RELATED []
"organum spirale" RELATED [BTO:0001691]
"organum spirale" RELATED LATIN [Wikipedia:Organ_of_Corti]
"spiral organ" EXACT []
"spiral organ of corti" EXACT []
Comments:Todo - check XAO, taxon constraints
Alt_id: UBERON:FMA_75715-MA_0001193
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000020(sense organ),UBERON:0004121(ectoderm-derived structure),UBERON:0010314(structure with developmental contribution from neural crest)
part_of:UBERON:0001855(cochlear duct of membranous labyrinth)



Children

part of:CL:0000202 (auditory hair cell),CL:0000589 (cochlear inner hair cell),CL:0002490 (organ of Corti supporting cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Mouse (Mus musculus)

  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
  • 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
  • 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
  • 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002227 (spiral organ of cochlea), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE1:Mm9::chr19:55256373..55256384,+#_94b85a8110f1309d0c218c5f692a21e0p@chr19:55256373..55256384, +
1.87e-86FFCP PHASE1:Mm9::chr13:78322370..78322376,-#_94b85a8110f1309d0c218c5f692a21e0p4@uc007rhb.1
1.87e-86FFCP PHASE2:Mm9::chr1:172843813..172843834,-#_94b85a8110f1309d0c218c5f692a21e0p@chr1:172843813..172843834, -
1.87e-86FFCP PHASE1:Mm9::chr1:182528371..182528385,+#_94b85a8110f1309d0c218c5f692a21e0p@chr1:182528371..182528385, +
1.87e-86FFCP PHASE1:Mm9::chr14:31283085..31283097,-#_94b85a8110f1309d0c218c5f692a21e0p@chr14:31283085..31283097, -
1.87e-86FFCP PHASE2:Mm9::chr4:130461150..130461185,+#_94b85a8110f1309d0c218c5f692a21e0p@chr4:130461150..130461185, +
1.87e-86FFCP PHASE1:Mm9::chr6:113251614..113251623,+#_94b85a8110f1309d0c218c5f692a21e0p@chr6:113251614..113251623, +
1.87e-86FFCP PHASE1:Mm9::chr19:10536767..10536777,-#_94b85a8110f1309d0c218c5f692a21e0p@chr19:10536767..10536777, -
1.87e-86FFCP PHASE1:Mm9::chr17:13983102..13983126,+#_94b85a8110f1309d0c218c5f692a21e0p@chr17:13983102..13983126, +
1.87e-86FFCP PHASE2:Mm9::chr3:100724698..100724706,+#_94b85a8110f1309d0c218c5f692a21e0p@chr3:100724698..100724706, +
1.87e-86FFCP PHASE2:Mm9::chr6:30619378..30619412,-#_94b85a8110f1309d0c218c5f692a21e0p11@Tsga14
1.87e-86FFCP PHASE1:Mm9::chr15:103146966..103146971,-#_94b85a8110f1309d0c218c5f692a21e0p@chr15:103146966..103146971, -
1.87e-86FFCP PHASE2:Mm9::chr19:10536797..10536802,-#_94b85a8110f1309d0c218c5f692a21e0p@chr19:10536797..10536802, -
1.87e-86FFCP PHASE2:Mm9::chr9:56208792..56208814,-#_94b85a8110f1309d0c218c5f692a21e0p@chr9:56208792..56208814, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207887..42207960,-#_94b85a8110f1309d0c218c5f692a21e0p1@Tecta
1.87e-86FFCP PHASE2:Mm9::chr3:106986057..106986062,+#_94b85a8110f1309d0c218c5f692a21e0p1@Kcna10
1.87e-86FFCP PHASE1:Mm9::chr3:35012397..35012405,+#_94b85a8110f1309d0c218c5f692a21e0p@chr3:35012397..35012405, +
1.87e-86FFCP PHASE1:Mm9::chr15:89215306..89215315,+#_94b85a8110f1309d0c218c5f692a21e0p@chr15:89215306..89215315, +
1.87e-86FFCP PHASE2:Mm9::chr11:102123535..102123544,+#_94b85a8110f1309d0c218c5f692a21e0p5@BC030867
1.87e-86FFCP PHASE1:Mm9::chr16:93971325..93971337,-#_94b85a8110f1309d0c218c5f692a21e0p@chr16:93971325..93971337, -
1.87e-86FFCP PHASE2:Mm9::chr3:35012425..35012439,+#_94b85a8110f1309d0c218c5f692a21e0p@chr3:35012425..35012439, +
1.87e-86FFCP PHASE2:Mm9::chr4:115556989..115556997,+#_94b85a8110f1309d0c218c5f692a21e0p1@Kncn
1.87e-86FFCP PHASE2:Mm9::chr17:13983160..13983167,+#_94b85a8110f1309d0c218c5f692a21e0p@chr17:13983160..13983167, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207887..42207960,-#_94b85a8110f1309d0c218c5f692a21e0p1@Tecta
1.87e-86FFCP PHASE1:Mm9::chr1:93235253..93235264,+#_94b85a8110f1309d0c218c5f692a21e0p@chr1:93235253..93235264, +
1.87e-86FFCP PHASE2:Mm9::chr9:42206745..42206774,-#_94b85a8110f1309d0c218c5f692a21e0p@chr9:42206745..42206774, -
1.87e-86FFCP PHASE2:Mm9::chr19:55255206..55255223,+#_94b85a8110f1309d0c218c5f692a21e0p1@Tectb
1.87e-86FFCP PHASE1:Mm9::chr10:81091447..81091464,+#_94b85a8110f1309d0c218c5f692a21e0p9@Ankrd24
1.87e-86FFCP PHASE2:Mm9::chr13:78257491..78257498,+#_94b85a8110f1309d0c218c5f692a21e0p@chr13:78257491..78257498, +
1.87e-86FFCP PHASE1:Mm9::chr7:109052297..109052300,-#_94b85a8110f1309d0c218c5f692a21e0p2@Tomt
1.87e-86FFCP PHASE2:Mm9::chr2:128881546..128881553,-#_94b85a8110f1309d0c218c5f692a21e0p@chr2:128881546..128881553, -
1.87e-86FFCP PHASE1:Mm9::chr5:30710403..30710406,-#_94b85a8110f1309d0c218c5f692a21e0p10@Otof
1.87e-86FFCP PHASE1:Mm9::chr10:107156949..107156956,-#_94b85a8110f1309d0c218c5f692a21e0p3@Ptprq
1.87e-86FFCP PHASE2:Mm9::chr4:151505798..151505818,-#_94b85a8110f1309d0c218c5f692a21e0p21@Espn
1.87e-86FFCP PHASE1:Mm9::chr9:42206745..42206774,-#_94b85a8110f1309d0c218c5f692a21e0p@chr9:42206745..42206774, -
1.87e-86FFCP PHASE1:Mm9::chr2:67011921..67011934,+#_94b85a8110f1309d0c218c5f692a21e0p2@Gm1322
1.87e-86FFCP PHASE1:Mm9::chr14:63099970..63099980,-#_94b85a8110f1309d0c218c5f692a21e0p@chr14:63099970..63099980, -
1.87e-86FFCP PHASE2:Mm9::chr1:93218694..93218705,+#_94b85a8110f1309d0c218c5f692a21e0p1@Espnl
1.87e-86FFCP PHASE1:Mm9::chr17:31335869..31335899,-#_94b85a8110f1309d0c218c5f692a21e0p1@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr18:42158627..42158630,-#_94b85a8110f1309d0c218c5f692a21e0p@chr18:42158627..42158630, -
1.87e-86FFCP PHASE1:Mm9::chr9:66860888..66860899,+#_94b85a8110f1309d0c218c5f692a21e0p@chr9:66860888..66860899, +
1.87e-86FFCP PHASE2:Mm9::chr9:42208142..42208157,-#_94b85a8110f1309d0c218c5f692a21e0p10@Tecta
1.87e-86FFCP PHASE1:Mm9::chr2:128881546..128881553,-#_94b85a8110f1309d0c218c5f692a21e0p@chr2:128881546..128881553, -
1.87e-86FFCP PHASE1:Mm9::chrX:154140800..154140810,+#_94b85a8110f1309d0c218c5f692a21e0p@chrX:154140800..154140810, +
1.87e-86FFCP PHASE1:Mm9::chr3:81012915..81012923,+#_94b85a8110f1309d0c218c5f692a21e0p@chr3:81012915..81012923, +
1.87e-86FFCP PHASE2:Mm9::chr2:152453066..152453075,-#_94b85a8110f1309d0c218c5f692a21e0p@chr2:152453066..152453075, -
1.87e-86FFCP PHASE1:Mm9::chr14:47293487..47293493,-#_94b85a8110f1309d0c218c5f692a21e0p@chr14:47293487..47293493, -
1.87e-86FFCP PHASE2:Mm9::chr12:13508046..13508055,+#_94b85a8110f1309d0c218c5f692a21e0p@chr12:13508046..13508055, +
1.87e-86FFCP PHASE2:Mm9::chr5:150945209..150945220,+#_94b85a8110f1309d0c218c5f692a21e0p@chr5:150945209..150945220, +
1.87e-86FFCP PHASE2:Mm9::chr3:154693281..154693317,-#_94b85a8110f1309d0c218c5f692a21e0p@chr3:154693281..154693317, -
1.87e-86FFCP PHASE1:Mm9::chr3:58626291..58626298,-#_94b85a8110f1309d0c218c5f692a21e0p@chr3:58626291..58626298, -
1.87e-86FFCP PHASE1:Mm9::chr13:43699188..43699216,+#_94b85a8110f1309d0c218c5f692a21e0p@chr13:43699188..43699216, +
1.87e-86FFCP PHASE1:Mm9::chr7:133957514..133957529,+#_94b85a8110f1309d0c218c5f692a21e0p@chr7:133957514..133957529, +
1.87e-86FFCP PHASE2:Mm9::chr4:63079735..63079745,-#_94b85a8110f1309d0c218c5f692a21e0p@chr4:63079735..63079745, -
1.87e-86FFCP PHASE2:Mm9::chr5:147854240..147854249,-#_94b85a8110f1309d0c218c5f692a21e0p@chr5:147854240..147854249, -
1.87e-86FFCP PHASE2:Mm9::chr10:107349430..107349440,-#_94b85a8110f1309d0c218c5f692a21e0p3@Otogl
1.87e-86FFCP PHASE1:Mm9::chr18:81314626..81314636,+#_94b85a8110f1309d0c218c5f692a21e0p@chr18:81314626..81314636, +
1.87e-86FFCP PHASE2:Mm9::chr17:31335903..31335921,-#_94b85a8110f1309d0c218c5f692a21e0p2@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr14:47293496..47293510,-#_94b85a8110f1309d0c218c5f692a21e0p@chr14:47293496..47293510, -
1.87e-86FFCP PHASE1:Mm9::chr9:42208142..42208157,-#_94b85a8110f1309d0c218c5f692a21e0p10@Tecta
1.87e-86FFCP PHASE2:Mm9::chr6:86746562..86746579,-#_94b85a8110f1309d0c218c5f692a21e0p@chr6:86746562..86746579, -
1.87e-86FFCP PHASE2:Mm9::chr15:58480061..58480066,+#_94b85a8110f1309d0c218c5f692a21e0p5@Fer1l6
1.87e-86FFCP PHASE2:Mm9::chr9:42207777..42207789,-#_94b85a8110f1309d0c218c5f692a21e0p7@Tecta
1.87e-86FFCP PHASE1:Mm9::chr13:76964459..76964469,+#_94b85a8110f1309d0c218c5f692a21e0p15@Mctp1
1.87e-86FFCP PHASE2:Mm9::chr11:114603036..114603048,+#_94b85a8110f1309d0c218c5f692a21e0p@chr11:114603036..114603048, +
1.87e-86FFCP PHASE2:Mm9::chr16:93971325..93971337,-#_94b85a8110f1309d0c218c5f692a21e0p@chr16:93971325..93971337, -
1.87e-86FFCP PHASE2:Mm9::chr1:154246932..154246939,+#_94b85a8110f1309d0c218c5f692a21e0p7@Glt25d2
1.87e-86FFCP PHASE1:Mm9::chr5:3909310..3909321,+#_94b85a8110f1309d0c218c5f692a21e0p@chr5:3909310..3909321, +
1.87e-86FFCP PHASE1:Mm9::chr4:115556972..115556979,+#_94b85a8110f1309d0c218c5f692a21e0p3@Kncn
1.87e-86FFCP PHASE1:Mm9::chr16:45693840..45693856,-#_94b85a8110f1309d0c218c5f692a21e0p1@Tmprss7
1.87e-86FFCP PHASE1:Mm9::chr10:107349392..107349413,-#_94b85a8110f1309d0c218c5f692a21e0p2@Otogl
1.87e-86FFCP PHASE2:Mm9::chr8:13414266..13414279,+#_94b85a8110f1309d0c218c5f692a21e0p@chr8:13414266..13414279, +
1.87e-86FFCP PHASE2:Mm9::chr2:53464168..53464175,+#_94b85a8110f1309d0c218c5f692a21e0p@chr2:53464168..53464175, +
1.87e-86FFCP PHASE2:Mm9::chr5:72652660..72652667,+#_94b85a8110f1309d0c218c5f692a21e0p@chr5:72652660..72652667, +
1.87e-86FFCP PHASE2:Mm9::chr11:89702580..89702593,-#_94b85a8110f1309d0c218c5f692a21e0p@chr11:89702580..89702593, -
1.87e-86FFCP PHASE1:Mm9::chr9:42207777..42207789,-#_94b85a8110f1309d0c218c5f692a21e0p7@Tecta
1.87e-86FFCP PHASE2:Mm9::chr2:136942131..136942142,-#_94b85a8110f1309d0c218c5f692a21e0p6@Jag1
1.87e-86FFCP PHASE1:Mm9::chr19:4140290..4140321,+#_94b85a8110f1309d0c218c5f692a21e0p2@Gpr152
1.87e-86FFCP PHASE1:Mm9::chr10:80806020..80806031,-#_94b85a8110f1309d0c218c5f692a21e0p3@Gipc3
1.87e-86FFCP PHASE2:Mm9::chr1:78523144..78523177,+#_94b85a8110f1309d0c218c5f692a21e0p@chr1:78523144..78523177, +
1.87e-86FFCP PHASE2:Mm9::chr7:53496326..53496340,+#_94b85a8110f1309d0c218c5f692a21e0p1@Otog
1.87e-86FFCP PHASE2:Mm9::chr5:3909310..3909321,+#_94b85a8110f1309d0c218c5f692a21e0p@chr5:3909310..3909321, +
1.87e-86FFCP PHASE2:Mm9::chr14:31283072..31283081,-#_94b85a8110f1309d0c218c5f692a21e0p@chr14:31283072..31283081, -
1.87e-86FFCP PHASE1:Mm9::chr11:102123554..102123566,+#_94b85a8110f1309d0c218c5f692a21e0p4@BC030867
1.87e-86FFCP PHASE2:Mm9::chr11:75421384..75421397,+#_94b85a8110f1309d0c218c5f692a21e0p@chr11:75421384..75421397, +
1.87e-86FFCP PHASE1:Mm9::chr1:43454162..43454170,-#_94b85a8110f1309d0c218c5f692a21e0p@chr1:43454162..43454170, -
1.87e-86FFCP PHASE1:Mm9::chr11:75421384..75421397,+#_94b85a8110f1309d0c218c5f692a21e0p@chr11:75421384..75421397, +
1.87e-86FFCP PHASE2:Mm9::chr8:13435173..13435186,+#_94b85a8110f1309d0c218c5f692a21e0p6@Fam70b
1.87e-86FFCP PHASE2:Mm9::chr2:121206667..121206674,-#_94b85a8110f1309d0c218c5f692a21e0p2@Strc
1.87e-86FFCP PHASE1:Mm9::chr17:27252925..27252939,+#_94b85a8110f1309d0c218c5f692a21e0p@chr17:27252925..27252939, +
1.87e-86FFCP PHASE2:Mm9::chr10:81091447..81091464,+#_94b85a8110f1309d0c218c5f692a21e0p9@Ankrd24
1.87e-86FFCP PHASE1:Mm9::chr13:78322383..78322395,-#_94b85a8110f1309d0c218c5f692a21e0p2@uc007rhb.1
1.87e-86FFCP PHASE1:Mm9::chr13:48087761..48087775,-#_94b85a8110f1309d0c218c5f692a21e0p@chr13:48087761..48087775, -
1.87e-86FFCP PHASE2:Mm9::chr1:172843847..172843880,-#_94b85a8110f1309d0c218c5f692a21e0p@chr1:172843847..172843880, -
1.87e-86FFCP PHASE1:Mm9::chr1:182528388..182528403,+#_94b85a8110f1309d0c218c5f692a21e0p@chr1:182528388..182528403, +
1.87e-86FFCP PHASE1:Mm9::chr11:4689776..4689785,-#_94b85a8110f1309d0c218c5f692a21e0p@chr11:4689776..4689785, -
1.87e-86FFCP PHASE2:Mm9::chr19:4140290..4140321,+#_94b85a8110f1309d0c218c5f692a21e0p2@Gpr152
1.87e-86FFCP PHASE1:Mm9::chr4:133802857..133802884,+#_94b85a8110f1309d0c218c5f692a21e0p@chr4:133802857..133802884, +
1.87e-86FFCP PHASE1:Mm9::chr19:10536797..10536802,-#_94b85a8110f1309d0c218c5f692a21e0p@chr19:10536797..10536802, -
1.87e-86FFCP PHASE1:Mm9::chr17:13983160..13983167,+#_94b85a8110f1309d0c218c5f692a21e0p@chr17:13983160..13983167, +










Property "Property value" (as page type) with input value "UBPROP:0000001 "A sensory structure in the lagenar portion of an amphibian's membranous labyrinth between the oval and round windows.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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