UBERON:0002227: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id=UBERON:FMA_75715-MA_0001193 | ||
|comment=Todo - check XAO, taxon constraints | |comment=Todo - check XAO, taxon constraints | ||
|created_by= | |created_by= | ||
| | |def="The organ of Corti (or spiral organ) is the organ in the inner ear of mammals that contains auditory sensory cells, or 'hair cells.' [WP,unvetted]." [Wikipedia:Organ_of_Corti] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0002227 | |||
|is_a=UBERON:0000020 ;;UBERON:0004121 ;;UBERON:0010314 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|part_of= | |name=spiral organ of cochlea | ||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0001855 | |||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "A sensory structure in the lagenar portion of an amphibian's membranous labyrinth between the oval and round windows.[AAO]" xsd:string | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "A sensory structure in the lagenar portion of an amphibian's membranous labyrinth between the oval and round windows.[AAO]" xsd:string | ||
| | |subset=uberon_slim | ||
| | |synonym="basilar papilla" RELATED [BTO:0001691];;"cochlear spiral organ" EXACT [];;"Corti's organ" RELATED [BTO:0001691];;"organ of corti" RELATED [];;"organum spirale" RELATED [BTO:0001691];;"organum spirale" RELATED LATIN [Wikipedia:Organ_of_Corti];;"spiral organ" EXACT [];;"spiral organ of corti" EXACT [] | ||
|union_of= | |||
|xref=AAO:0011018;;BTO:0001691;;EFO:0001364;;EMAPA:19061;;EMAPA:19151;;EV:0100364;;FMA:75715;;GAID:772;;http://upload.wikimedia.org/wikipedia/commons/c/cb/Cochlea-crosssection.svg;;http://upload.wikimedia.org/wikipedia/commons/thumb/c/c7/Cochlea-crosssection.png/200px-Cochlea-crosssection.png;;MA:0001193;;ncithesaurus:Organ_of_Corti;;ncithesaurus:Spiral_Organ_of_Corti;;NIF_GrossAnatomy:birnlex_2526;;XAO:0003145 | |||
}} | }} | ||
Latest revision as of 17:28, 12 September 2014
| Name: | spiral organ of cochlea | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "The organ of Corti (or spiral organ) is the organ in the inner ear of mammals that contains auditory sensory cells, or 'hair cells.' [WP,unvetted]." [Wikipedia:Organ_of_Corti] | ||
| Xrefs: |
| ||
| Synonyms: |
"basilar papilla" RELATED [BTO:0001691] "cochlear spiral organ" EXACT [] "Corti's organ" RELATED [BTO:0001691] "organ of corti" RELATED [] "organum spirale" RELATED [BTO:0001691] "organum spirale" RELATED LATIN [Wikipedia:Organ_of_Corti] "spiral organ" EXACT [] "spiral organ of corti" EXACT [] | ||
| Comments: | Todo - check XAO, taxon constraints | ||
| Alt_id: | UBERON:FMA_75715-MA_0001193 | ||
| Subset: | uberon_slim |
200px-Cochlea-crosssection.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000020(sense organ),UBERON:0004121(ectoderm-derived structure),UBERON:0010314(structure with developmental contribution from neural crest) |
|---|---|
| part_of: | UBERON:0001855(cochlear duct of membranous labyrinth) |
Children
| part of: | CL:0000202 (auditory hair cell),CL:0000589 (cochlear inner hair cell),CL:0002490 (organ of Corti supporting cell) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Mouse (Mus musculus)
- 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
- 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
- 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
- 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
- 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
- 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002227 (spiral organ of cochlea), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.87e-86 | FFCP PHASE1:Mm9::chr13:76964459..76964469,+#_94b85a8110f1309d0c218c5f692a21e0 | p15@Mctp1 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr3:58626291..58626298,-#_94b85a8110f1309d0c218c5f692a21e0 | p@chr3:58626291..58626298, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr10:97109753..97109764,+#_94b85a8110f1309d0c218c5f692a21e0 | p3@Epyc |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:133957514..133957529,+#_94b85a8110f1309d0c218c5f692a21e0 | p@chr7:133957514..133957529, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr4:63079735..63079745,-#_94b85a8110f1309d0c218c5f692a21e0 | p@chr4:63079735..63079745, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr5:147854240..147854249,-#_94b85a8110f1309d0c218c5f692a21e0 | p@chr5:147854240..147854249, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr10:107349430..107349440,-#_94b85a8110f1309d0c218c5f692a21e0 | p3@Otogl |
| 1.87e-86 | FFCP PHASE1:Mm9::chr18:81314626..81314636,+#_94b85a8110f1309d0c218c5f692a21e0 | p@chr18:81314626..81314636, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr17:31335903..31335921,-#_94b85a8110f1309d0c218c5f692a21e0 | p2@Tmprss3 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr14:47293496..47293510,-#_94b85a8110f1309d0c218c5f692a21e0 | p@chr14:47293496..47293510, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42208142..42208157,-#_94b85a8110f1309d0c218c5f692a21e0 | p10@Tecta |
| 1.87e-86 | FFCP PHASE2:Mm9::chr6:86746562..86746579,-#_94b85a8110f1309d0c218c5f692a21e0 | p@chr6:86746562..86746579, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr15:58480061..58480066,+#_94b85a8110f1309d0c218c5f692a21e0 | p5@Fer1l6 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:42207777..42207789,-#_94b85a8110f1309d0c218c5f692a21e0 | p7@Tecta |
| 1.87e-86 | FFCP PHASE2:Mm9::chr11:114603036..114603048,+#_94b85a8110f1309d0c218c5f692a21e0 | p@chr11:114603036..114603048, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr16:93971325..93971337,-#_94b85a8110f1309d0c218c5f692a21e0 | p@chr16:93971325..93971337, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr13:43699228..43699239,+#_94b85a8110f1309d0c218c5f692a21e0 | p@chr13:43699228..43699239, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:154246932..154246939,+#_94b85a8110f1309d0c218c5f692a21e0 | p7@Glt25d2 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr5:3909310..3909321,+#_94b85a8110f1309d0c218c5f692a21e0 | p@chr5:3909310..3909321, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr4:115556972..115556979,+#_94b85a8110f1309d0c218c5f692a21e0 | p3@Kncn |
| 1.87e-86 | FFCP PHASE1:Mm9::chr16:45693840..45693856,-#_94b85a8110f1309d0c218c5f692a21e0 | p1@Tmprss7 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr8:13414266..13414279,+#_94b85a8110f1309d0c218c5f692a21e0 | p@chr8:13414266..13414279, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:53464168..53464175,+#_94b85a8110f1309d0c218c5f692a21e0 | p@chr2:53464168..53464175, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr5:72652660..72652667,+#_94b85a8110f1309d0c218c5f692a21e0 | p@chr5:72652660..72652667, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr11:89702580..89702593,-#_94b85a8110f1309d0c218c5f692a21e0 | p@chr11:89702580..89702593, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42207777..42207789,-#_94b85a8110f1309d0c218c5f692a21e0 | p7@Tecta |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:136942131..136942142,-#_94b85a8110f1309d0c218c5f692a21e0 | p6@Jag1 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr19:4140290..4140321,+#_94b85a8110f1309d0c218c5f692a21e0 | p2@Gpr152 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr10:80806047..80806059,-#_94b85a8110f1309d0c218c5f692a21e0 | p4@Gipc3 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:78523144..78523177,+#_94b85a8110f1309d0c218c5f692a21e0 | p@chr1:78523144..78523177, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:53496326..53496340,+#_94b85a8110f1309d0c218c5f692a21e0 | p1@Otog |
| 1.87e-86 | FFCP PHASE2:Mm9::chr5:3909310..3909321,+#_94b85a8110f1309d0c218c5f692a21e0 | p@chr5:3909310..3909321, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr14:31283072..31283081,-#_94b85a8110f1309d0c218c5f692a21e0 | p@chr14:31283072..31283081, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr11:75421384..75421397,+#_94b85a8110f1309d0c218c5f692a21e0 | p@chr11:75421384..75421397, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:43454162..43454170,-#_94b85a8110f1309d0c218c5f692a21e0 | p@chr1:43454162..43454170, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr10:107349418..107349423,-#_94b85a8110f1309d0c218c5f692a21e0 | p5@Otogl |
| 1.87e-86 | FFCP PHASE2:Mm9::chr8:13435173..13435186,+#_94b85a8110f1309d0c218c5f692a21e0 | p6@Fam70b |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:121206667..121206674,-#_94b85a8110f1309d0c218c5f692a21e0 | p2@Strc |
| 1.87e-86 | FFCP PHASE1:Mm9::chr17:27252925..27252939,+#_94b85a8110f1309d0c218c5f692a21e0 | p@chr17:27252925..27252939, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr12:109905399..109905416,+#_94b85a8110f1309d0c218c5f692a21e0 | p@chr12:109905399..109905416, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr10:81091447..81091464,+#_94b85a8110f1309d0c218c5f692a21e0 | p9@Ankrd24 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:42207965..42207978,-#_94b85a8110f1309d0c218c5f692a21e0 | p5@Tecta |
| 1.87e-86 | FFCP PHASE1:Mm9::chr8:13435173..13435186,+#_94b85a8110f1309d0c218c5f692a21e0 | p6@Fam70b |
| 1.87e-86 | FFCP PHASE1:Mm9::chr13:78322383..78322395,-#_94b85a8110f1309d0c218c5f692a21e0 | p2@uc007rhb.1 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:172843847..172843880,-#_94b85a8110f1309d0c218c5f692a21e0 | p@chr1:172843847..172843880, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:182528388..182528403,+#_94b85a8110f1309d0c218c5f692a21e0 | p@chr1:182528388..182528403, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr19:4140290..4140321,+#_94b85a8110f1309d0c218c5f692a21e0 | p2@Gpr152 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr4:133802857..133802884,+#_94b85a8110f1309d0c218c5f692a21e0 | p@chr4:133802857..133802884, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr19:10536797..10536802,-#_94b85a8110f1309d0c218c5f692a21e0 | p@chr19:10536797..10536802, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr17:13983160..13983167,+#_94b85a8110f1309d0c218c5f692a21e0 | p@chr17:13983160..13983167, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr6:30619443..30619450,-#_94b85a8110f1309d0c218c5f692a21e0 | p13@Tsga14 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr3:100724698..100724706,+#_94b85a8110f1309d0c218c5f692a21e0 | p@chr3:100724698..100724706, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:67011921..67011934,+#_94b85a8110f1309d0c218c5f692a21e0 | p2@Gm1322 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr11:120222470..120222516,+#_94b85a8110f1309d0c218c5f692a21e0 | p2@Fscn2 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr3:35012425..35012439,+#_94b85a8110f1309d0c218c5f692a21e0 | p@chr3:35012425..35012439, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr15:89215319..89215330,+#_94b85a8110f1309d0c218c5f692a21e0 | p@chr15:89215319..89215330, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr11:102123554..102123566,+#_94b85a8110f1309d0c218c5f692a21e0 | p4@BC030867 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr5:28035962..28035983,+#_94b85a8110f1309d0c218c5f692a21e0 | p@chr5:28035962..28035983, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:172843796..172843799,-#_94b85a8110f1309d0c218c5f692a21e0 | p@chr1:172843796..172843799, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr13:58283583..58283607,-#_94b85a8110f1309d0c218c5f692a21e0 | p@chr13:58283583..58283607, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr3:81012915..81012923,+#_94b85a8110f1309d0c218c5f692a21e0 | p@chr3:81012915..81012923, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr10:107349309..107349318,-#_94b85a8110f1309d0c218c5f692a21e0 | p4@Otogl |
| 1.87e-86 | FFCP PHASE1:Mm9::chr5:68423014..68423037,+#_94b85a8110f1309d0c218c5f692a21e0 | p1@Grxcr1 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr18:66033526..66033539,-#_94b85a8110f1309d0c218c5f692a21e0 | p@chr18:66033526..66033539, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr16:93971357..93971363,-#_94b85a8110f1309d0c218c5f692a21e0 | p@chr16:93971357..93971363, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr17:13983179..13983190,+#_94b85a8110f1309d0c218c5f692a21e0 | p@chr17:13983179..13983190, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42207965..42207978,-#_94b85a8110f1309d0c218c5f692a21e0 | p5@Tecta |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:42206784..42206793,-#_94b85a8110f1309d0c218c5f692a21e0 | p@chr9:42206784..42206793, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr19:55255289..55255299,+#_94b85a8110f1309d0c218c5f692a21e0 | p2@Tectb |
| 1.87e-86 | FFCP PHASE2:Mm9::chr5:21371424..21371435,-#_94b85a8110f1309d0c218c5f692a21e0 | p2@Slc26a5 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr3:154459184..154459195,+#_94b85a8110f1309d0c218c5f692a21e0 | p@chr3:154459184..154459195, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr13:78257518..78257522,+#_94b85a8110f1309d0c218c5f692a21e0 | p@chr13:78257518..78257522, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:16651649..16651655,+#_94b85a8110f1309d0c218c5f692a21e0 | p@chr1:16651649..16651655, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr14:102297728..102297742,+#_94b85a8110f1309d0c218c5f692a21e0 | p@chr14:102297728..102297742, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:29935952..29935993,+#_94b85a8110f1309d0c218c5f692a21e0 | p7@Pkn3 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr5:30710416..30710440,-#_94b85a8110f1309d0c218c5f692a21e0 | p2@Otof |
| 1.87e-86 | FFCP PHASE1:Mm9::chr11:120222470..120222516,+#_94b85a8110f1309d0c218c5f692a21e0 | p2@Fscn2 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42206784..42206793,-#_94b85a8110f1309d0c218c5f692a21e0 | p@chr9:42206784..42206793, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:67011941..67011951,+#_94b85a8110f1309d0c218c5f692a21e0 | p3@Gm1322 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:93235228..93235249,+#_94b85a8110f1309d0c218c5f692a21e0 | p@chr1:93235228..93235249, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr15:12848147..12848162,+#_94b85a8110f1309d0c218c5f692a21e0 | p@chr15:12848147..12848162, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr4:154208086..154208123,+#_94b85a8110f1309d0c218c5f692a21e0 | p@chr4:154208086..154208123, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr17:31335903..31335921,-#_94b85a8110f1309d0c218c5f692a21e0 | p2@Tmprss3 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr12:13508015..13508019,+#_94b85a8110f1309d0c218c5f692a21e0 | p@chr12:13508015..13508019, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr11:8405038..8405048,-#_94b85a8110f1309d0c218c5f692a21e0 | p@chr11:8405038..8405048, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:109265277..109265288,-#_94b85a8110f1309d0c218c5f692a21e0 | p4@Chrna10 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr19:21028739..21028785,-#_94b85a8110f1309d0c218c5f692a21e0 | p1@Tmc1 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr14:47293496..47293510,-#_94b85a8110f1309d0c218c5f692a21e0 | p@chr14:47293496..47293510, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:9811162..9811171,-#_94b85a8110f1309d0c218c5f692a21e0 | p2@9230102O04Rik |
| 1.87e-86 | FFCP PHASE2:Mm9::chr14:102297728..102297742,+#_94b85a8110f1309d0c218c5f692a21e0 | p@chr14:102297728..102297742, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:50968647..50968668,-#_94b85a8110f1309d0c218c5f692a21e0 | p@chr9:50968647..50968668, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr10:67371994..67372010,+#_94b85a8110f1309d0c218c5f692a21e0 | p@chr10:67371994..67372010, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr13:78257454..78257465,+#_94b85a8110f1309d0c218c5f692a21e0 | p@chr13:78257454..78257465, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr15:89215306..89215315,+#_94b85a8110f1309d0c218c5f692a21e0 | p@chr15:89215306..89215315, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:109052262..109052291,-#_94b85a8110f1309d0c218c5f692a21e0 | p1@Tomt |
| 1.87e-86 | FFCP PHASE2:Mm9::chr5:30710403..30710406,-#_94b85a8110f1309d0c218c5f692a21e0 | p10@Otof |
| 1.87e-86 | FFCP PHASE1:Mm9::chr14:20649897..20649907,+#_94b85a8110f1309d0c218c5f692a21e0 | p@chr14:20649897..20649907, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr18:81327205..81327211,+#_94b85a8110f1309d0c218c5f692a21e0 | p@chr18:81327205..81327211, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr17:31335953..31335957,-#_94b85a8110f1309d0c218c5f692a21e0 | p3@Tmprss3 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:42207792..42207805,-#_94b85a8110f1309d0c218c5f692a21e0 | p11@Tecta |
Property "Property value" (as page type) with input value "UBPROP:0000001 "A sensory structure in the lagenar portion of an amphibian's membranous labyrinth between the oval and round windows.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
