Personal tools

UBERON:0002116: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
Line 14: Line 14:
|located_in=
|located_in=
|name=ileum
|name=ileum
|namespace=
|namespace=FANTOM
|obo_creation_date=
|obo_creation_date=
|part_of=UBERON:0002108
|part_of=UBERON:0002108

Latest revision as of 17:26, 12 September 2014

Name:ileum
Namespace:FANTOM
Definition:"The ileum is the final section of the small intestine in most higher vertebrates, including mammals, reptiles, and birds. In fish, the divisions of the small intestine are not as clear and the terms posterior intestine or distal intestine may be used instead of ileum. [WP,unvetted]." [Wikipedia:Ileum]
Xrefs:
links:

AAO:0010403
BTO:0000620
EFO:0001334
EV:0100075
FMA:7208
GAID:315
galen:Ileum
[1]
MA:0000339
MAT:0000282
MESH:A.03.492.411.620.484
MIAA:0000282
ncithesaurus:Ileum
OpenCyc:Mx4rvdcLHZwpEbGdrcN5Y29ycA
SCTID:181249005
VHOG:0000647

XAO:0000237
Synonyms: "distal intestine" RELATED [BTO:0000620]
"intestinum ileum" RELATED [BTO:0000620]
"lower intestine" RELATED [BTO:0000620]
Comments:TODO consider ZFA:0000706 posterior intestine, see also colon
Alt_id: UBERON:FMA_7208-MA_0000339-MIAA_0000282-XAO_0000237
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004921(subdivision of digestive tract)
part_of:UBERON:0002108(small intestine)



Children

is a:FF:0011477 (Ileum epithelium 1h after RANKL)
part of:UBERON:0000331 (ileal mucosa),UBERON:0008344 (intestinal villus of ileum),UBERON:0008345 (ileal epithelium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002116 (ileum), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.58e-86FFCP PHASE2:Mm9::chr16:32477713..32477720,-#_5a0f4a9747fb0c12e65989bb5cc9bb8ep@chr16:32477713..32477720, -
1.58e-86FFCP PHASE2:Mm9::chr4:5463968..5463972,+#_5a0f4a9747fb0c12e65989bb5cc9bb8ep@chr4:5463968..5463972, +
1.58e-86FFCP PHASE1:Mm9::chr11:43412172..43412177,-#_5a0f4a9747fb0c12e65989bb5cc9bb8ep@chr11:43412172..43412177, -
1.58e-86FFCP PHASE1:Mm9::chr4:5463968..5463972,+#_5a0f4a9747fb0c12e65989bb5cc9bb8ep@chr4:5463968..5463972, +
1.58e-86FFCP PHASE1:Mm9::chr16:32477713..32477720,-#_5a0f4a9747fb0c12e65989bb5cc9bb8ep@chr16:32477713..32477720, -
1.58e-86FFCP PHASE2:Mm9::chr11:43412172..43412177,-#_5a0f4a9747fb0c12e65989bb5cc9bb8ep@chr11:43412172..43412177, -
1.33e-65FFCP PHASE1:Mm9::chr11:43412139..43412149,-#_98d9737ac0a174376f6f39068ea8745fp@chr11:43412139..43412149, -
1.33e-65FFCP PHASE2:Mm9::chr11:43412139..43412149,-#_98d9737ac0a174376f6f39068ea8745fp@chr11:43412139..43412149, -
3.28e-58FFCP PHASE1:Mm9::chr5:31350252..31350259,-#_dfedb25fec899aa967180d6ed14f9b15p13@Slc5a6
3.28e-58FFCP PHASE2:Mm9::chr11:43412215..43412219,-#_dfedb25fec899aa967180d6ed14f9b15p@chr11:43412215..43412219, -
3.28e-58FFCP PHASE1:Mm9::chr3:80191466..80191470,+#_dfedb25fec899aa967180d6ed14f9b15p@chr3:80191466..80191470, +
3.28e-58FFCP PHASE1:Mm9::chr10:127165632..127165636,+#_dfedb25fec899aa967180d6ed14f9b15p@chr10:127165632..127165636, +
3.28e-58FFCP PHASE2:Mm9::chr15:70621810..70621814,-#_dfedb25fec899aa967180d6ed14f9b15p@chr15:70621810..70621814, -
3.28e-58FFCP PHASE2:Mm9::chr10:127165632..127165636,+#_dfedb25fec899aa967180d6ed14f9b15p@chr10:127165632..127165636, +
3.28e-58FFCP PHASE1:Mm9::chr15:70621810..70621814,-#_dfedb25fec899aa967180d6ed14f9b15p@chr15:70621810..70621814, -
3.28e-58FFCP PHASE1:Mm9::chr11:43412215..43412219,-#_dfedb25fec899aa967180d6ed14f9b15p@chr11:43412215..43412219, -
3.28e-58FFCP PHASE2:Mm9::chr5:31350252..31350259,-#_dfedb25fec899aa967180d6ed14f9b15p13@Slc5a6
3.28e-58FFCP PHASE2:Mm9::chr3:80191466..80191470,+#_dfedb25fec899aa967180d6ed14f9b15p@chr3:80191466..80191470, +
4.9e-53FFCP PHASE2:Mm9::chr1:174032230..174032242,+#_5bd96d06e5ea2826f8cc49d6d6648eddp@chr1:174032230..174032242, +
4.9e-53FFCP PHASE1:Mm9::chr1:174032230..174032242,+#_5bd96d06e5ea2826f8cc49d6d6648eddp@chr1:174032230..174032242, +
1.1e-52FFCP PHASE2:Mm9::chr1:123242799..123242804,-#_bf1c0c25a52f668ed9d1f83351f6626bp@chr1:123242799..123242804, -
1.1e-52FFCP PHASE1:Mm9::chr1:123242799..123242804,-#_bf1c0c25a52f668ed9d1f83351f6626bp@chr1:123242799..123242804, -
5.51e-52FFCP PHASE2:Mm9::chr6:48417827..48417837,+#_b0438bcf9d7a1c226c22a41e2771b35ep@chr6:48417827..48417837, +
5.51e-52FFCP PHASE1:Mm9::chr9:7692339..7692366,+#_b0438bcf9d7a1c226c22a41e2771b35ep@chr9:7692339..7692366, +
5.51e-52FFCP PHASE2:Mm9::chr9:7692339..7692366,+#_b0438bcf9d7a1c226c22a41e2771b35ep@chr9:7692339..7692366, +
5.51e-52FFCP PHASE1:Mm9::chr6:48417827..48417837,+#_b0438bcf9d7a1c226c22a41e2771b35ep@chr6:48417827..48417837, +
1.18e-44FFCP PHASE2:Mm9::chr1:174032263..174032278,+#_2ddd66ee92e2546f113aae61df0bb165p@chr1:174032263..174032278, +
1.18e-44FFCP PHASE1:Mm9::chr1:174032263..174032278,+#_2ddd66ee92e2546f113aae61df0bb165p@chr1:174032263..174032278, +
1.66e-44FFCP PHASE2:Mm9::chr11:76730372..76730376,+#_a7f94ca04c828922d16a8d6f6da09bd8p@chr11:76730372..76730376, +
1.66e-44FFCP PHASE1:Mm9::chr11:76730372..76730376,+#_a7f94ca04c828922d16a8d6f6da09bd8p@chr11:76730372..76730376, +
2.33e-44FFCP PHASE2:Mm9::chr19:6114448..6114456,+#_44ce8df18b43d708ce7a239881a1ee75p@chr19:6114448..6114456, +
2.33e-44FFCP PHASE1:Mm9::chr19:6114448..6114456,+#_44ce8df18b43d708ce7a239881a1ee75p@chr19:6114448..6114456, +
2.33e-44FFCP PHASE2:Mm9::chr3:65610528..65610533,+#_44ce8df18b43d708ce7a239881a1ee75p@chr3:65610528..65610533, +
2.33e-44FFCP PHASE1:Mm9::chr3:65610528..65610533,+#_44ce8df18b43d708ce7a239881a1ee75p@chr3:65610528..65610533, +
1.7e-39FFCP PHASE1:Mm9::chr3:6169801..6169806,-#_1f3d10bf549d929618e30c343afe27f4p@chr3:6169801..6169806, -
1.7e-39FFCP PHASE2:Mm9::chr3:6169801..6169806,-#_1f3d10bf549d929618e30c343afe27f4p@chr3:6169801..6169806, -
2.66e-39FFCP PHASE1:Mm9::chr19:6112940..6112946,+#_e14da1d5ebf1eb90483a4cb20e78d859p@chr19:6112940..6112946, +
2.66e-39FFCP PHASE2:Mm9::chr19:6112940..6112946,+#_e14da1d5ebf1eb90483a4cb20e78d859p@chr19:6112940..6112946, +
4.15e-39FFCP PHASE2:Mm9::chr5:31350231..31350240,-#_d8043e6ce254faa2af75fe4a578ad89ap12@Slc5a6
4.15e-39FFCP PHASE1:Mm9::chr5:31350231..31350240,-#_d8043e6ce254faa2af75fe4a578ad89ap12@Slc5a6
1.17e-38FFCP PHASE2:Mm9::chr11:43412071..43412093,+#_ad1166dc699b68b25b3f154c837b5fe0p@chr11:43412071..43412093, +
1.17e-38FFCP PHASE1:Mm9::chr11:43412071..43412093,+#_ad1166dc699b68b25b3f154c837b5fe0p@chr11:43412071..43412093, +
1.56e-38FFCP PHASE1:Mm9::chr3:103636485..103636490,+#_ddf57869b767ce53a7c441efdcddaa82p3@Bcl2l15
1.56e-38FFCP PHASE2:Mm9::chr3:103636485..103636490,+#_ddf57869b767ce53a7c441efdcddaa82p3@Bcl2l15
3.67e-34FFCP PHASE1:Mm9::chr11:43412170..43412191,+#_611e4aac91d1d6dea6dd642edad9a529p@chr11:43412170..43412191, +
3.67e-34FFCP PHASE2:Mm9::chr11:43412170..43412191,+#_611e4aac91d1d6dea6dd642edad9a529p@chr11:43412170..43412191, +
4.74e-34FFCP PHASE2:Mm9::chr11:43409580..43409591,+#_8dea566a5a3b1435dd7735cce67a3a03p@chr11:43409580..43409591, +
4.74e-34FFCP PHASE1:Mm9::chr11:43409580..43409591,+#_8dea566a5a3b1435dd7735cce67a3a03p@chr11:43409580..43409591, +
6.12e-34FFCP PHASE1:Mm9::chr6:40578587..40578594,+#_a454ed91c9b51df407caf096cd8209dcp4@Mgam
6.12e-34FFCP PHASE2:Mm9::chr6:40578587..40578594,+#_a454ed91c9b51df407caf096cd8209dcp4@Mgam
1.02e-33FFCP PHASE1:Mm9::chr2:72453221..72453226,-#_dfe493a876355439fe5c81496b6853a8p@chr2:72453221..72453226, -
1.02e-33FFCP PHASE2:Mm9::chr2:72453221..72453226,-#_dfe493a876355439fe5c81496b6853a8p@chr2:72453221..72453226, -
1.31e-33FFCP PHASE2:Mm9::chr6:78323455..78323458,-#_c5235eba810482d5eba030018d5b575dp@chr6:78323455..78323458, -
1.31e-33FFCP PHASE1:Mm9::chr6:78323455..78323458,-#_c5235eba810482d5eba030018d5b575dp@chr6:78323455..78323458, -
1.31e-33FFCP PHASE2:Mm9::chr19:6112924..6112937,+#_c5235eba810482d5eba030018d5b575dp@chr19:6112924..6112937, +
1.31e-33FFCP PHASE1:Mm9::chr19:6112924..6112937,+#_c5235eba810482d5eba030018d5b575dp@chr19:6112924..6112937, +
2.89e-30FFCP PHASE1:Mm9::chr4:138388796..138388811,+#_5f55ab265f2604c5c091aa5a34b80adcp3@ENSMUST00000147728
2.89e-30FFCP PHASE2:Mm9::chr4:138388796..138388811,+#_5f55ab265f2604c5c091aa5a34b80adcp3@ENSMUST00000147728
4.03e-30FFCP PHASE2:Mm9::chr10:128109355..128109365,-#_c2a76abdfb0e9e27cc10ca5df19ccb94p@chr10:128109355..128109365, -
4.03e-30FFCP PHASE2:Mm9::chr17:34484746..34484750,+#_c2a76abdfb0e9e27cc10ca5df19ccb94p@chr17:34484746..34484750, +
4.03e-30FFCP PHASE1:Mm9::chr17:34484746..34484750,+#_c2a76abdfb0e9e27cc10ca5df19ccb94p@chr17:34484746..34484750, +
4.03e-30FFCP PHASE1:Mm9::chr10:128109355..128109365,-#_c2a76abdfb0e9e27cc10ca5df19ccb94p@chr10:128109355..128109365, -
5.61e-30FFCP PHASE1:Mm9::chr11:27472982..27472983,+#_dadee0484d1f49e32cd9cef3b37d0d85p@chr11:27472982..27472983, +
5.61e-30FFCP PHASE2:Mm9::chr8:5085607..5085611,-#_dadee0484d1f49e32cd9cef3b37d0d85p@chr8:5085607..5085611, -
5.61e-30FFCP PHASE1:Mm9::chr18:58306021..58306022,+#_dadee0484d1f49e32cd9cef3b37d0d85p@chr18:58306021..58306022, +
5.61e-30FFCP PHASE2:Mm9::chr9:50047835..50047836,+#_dadee0484d1f49e32cd9cef3b37d0d85p@chr9:50047835..50047836, +
5.61e-30FFCP PHASE1:Mm9::chr11:9039303..9039304,+#_dadee0484d1f49e32cd9cef3b37d0d85p@chr11:9039303..9039304, +
5.61e-30FFCP PHASE2:Mm9::chr8:27020687..27020691,+#_dadee0484d1f49e32cd9cef3b37d0d85p@chr8:27020687..27020691, +
5.61e-30FFCP PHASE2:Mm9::chr11:27472982..27472983,+#_dadee0484d1f49e32cd9cef3b37d0d85p@chr11:27472982..27472983, +
5.61e-30FFCP PHASE1:Mm9::chr8:5085607..5085611,-#_dadee0484d1f49e32cd9cef3b37d0d85p@chr8:5085607..5085611, -
5.61e-30FFCP PHASE1:Mm9::chr17:4030939..4030944,-#_dadee0484d1f49e32cd9cef3b37d0d85p@chr17:4030939..4030944, -
5.61e-30FFCP PHASE2:Mm9::chr18:55496010..55496011,-#_dadee0484d1f49e32cd9cef3b37d0d85p@chr18:55496010..55496011, -
5.61e-30FFCP PHASE2:Mm9::chr13:17402712..17402716,+#_dadee0484d1f49e32cd9cef3b37d0d85p@chr13:17402712..17402716, +
5.61e-30FFCP PHASE2:Mm9::chr12:103615373..103615374,+#_dadee0484d1f49e32cd9cef3b37d0d85p@chr12:103615373..103615374, +
5.61e-30FFCP PHASE2:Mm9::chrX:83991903..83991905,-#_dadee0484d1f49e32cd9cef3b37d0d85p@chrX:83991903..83991905, -
5.61e-30FFCP PHASE1:Mm9::chr13:17402712..17402716,+#_dadee0484d1f49e32cd9cef3b37d0d85p@chr13:17402712..17402716, +
5.61e-30FFCP PHASE1:Mm9::chr8:27020687..27020691,+#_dadee0484d1f49e32cd9cef3b37d0d85p@chr8:27020687..27020691, +
5.61e-30FFCP PHASE2:Mm9::chr11:9039303..9039304,+#_dadee0484d1f49e32cd9cef3b37d0d85p@chr11:9039303..9039304, +
5.61e-30FFCP PHASE2:Mm9::chr17:4030939..4030944,-#_dadee0484d1f49e32cd9cef3b37d0d85p@chr17:4030939..4030944, -
5.61e-30FFCP PHASE2:Mm9::chr18:58306021..58306022,+#_dadee0484d1f49e32cd9cef3b37d0d85p@chr18:58306021..58306022, +
5.61e-30FFCP PHASE1:Mm9::chrX:68120720..68120723,-#_dadee0484d1f49e32cd9cef3b37d0d85p@chrX:68120720..68120723, -
5.61e-30FFCP PHASE1:Mm9::chr12:103615373..103615374,+#_dadee0484d1f49e32cd9cef3b37d0d85p@chr12:103615373..103615374, +
5.61e-30FFCP PHASE1:Mm9::chr4:72564746..72564750,-#_dadee0484d1f49e32cd9cef3b37d0d85p@chr4:72564746..72564750, -
5.61e-30FFCP PHASE2:Mm9::chr3:20879214..20879216,+#_dadee0484d1f49e32cd9cef3b37d0d85p@chr3:20879214..20879216, +
5.61e-30FFCP PHASE2:Mm9::chrX:68120720..68120723,-#_dadee0484d1f49e32cd9cef3b37d0d85p@chrX:68120720..68120723, -
5.61e-30FFCP PHASE1:Mm9::chr18:55496010..55496011,-#_dadee0484d1f49e32cd9cef3b37d0d85p@chr18:55496010..55496011, -
5.61e-30FFCP PHASE2:Mm9::chr4:72564746..72564750,-#_dadee0484d1f49e32cd9cef3b37d0d85p@chr4:72564746..72564750, -
5.61e-30FFCP PHASE1:Mm9::chr17:43614030..43614038,+#_dadee0484d1f49e32cd9cef3b37d0d85p@chr17:43614030..43614038, +
5.61e-30FFCP PHASE1:Mm9::chr1:40187318..40187321,-#_dadee0484d1f49e32cd9cef3b37d0d85p@chr1:40187318..40187321, -
5.61e-30FFCP PHASE1:Mm9::chr9:50047835..50047836,+#_dadee0484d1f49e32cd9cef3b37d0d85p@chr9:50047835..50047836, +
5.61e-30FFCP PHASE1:Mm9::chrX:83991903..83991905,-#_dadee0484d1f49e32cd9cef3b37d0d85p@chrX:83991903..83991905, -
5.61e-30FFCP PHASE2:Mm9::chr17:43614030..43614038,+#_dadee0484d1f49e32cd9cef3b37d0d85p@chr17:43614030..43614038, +
5.61e-30FFCP PHASE2:Mm9::chr1:40187318..40187321,-#_dadee0484d1f49e32cd9cef3b37d0d85p@chr1:40187318..40187321, -
5.61e-30FFCP PHASE1:Mm9::chr10:31111154..31111155,+#_dadee0484d1f49e32cd9cef3b37d0d85p@chr10:31111154..31111155, +
5.61e-30FFCP PHASE1:Mm9::chr11:106410939..106410940,+#_dadee0484d1f49e32cd9cef3b37d0d85p@chr11:106410939..106410940, +
5.61e-30FFCP PHASE2:Mm9::chr11:106410939..106410940,+#_dadee0484d1f49e32cd9cef3b37d0d85p@chr11:106410939..106410940, +
5.61e-30FFCP PHASE1:Mm9::chr3:20879214..20879216,+#_dadee0484d1f49e32cd9cef3b37d0d85p@chr3:20879214..20879216, +
5.61e-30FFCP PHASE2:Mm9::chr10:31111154..31111155,+#_dadee0484d1f49e32cd9cef3b37d0d85p@chr10:31111154..31111155, +
5.61e-30FFCP PHASE2:Mm9::chr13:55874724..55874725,-#_dadee0484d1f49e32cd9cef3b37d0d85p@chr13:55874724..55874725, -
5.61e-30FFCP PHASE1:Mm9::chr13:55874724..55874725,-#_dadee0484d1f49e32cd9cef3b37d0d85p@chr13:55874724..55874725, -

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0002116&oldid=3277381"