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|located_in=
|located_in=
|name=mesentery
|name=mesentery
|namespace=
|namespace=FANTOM
|obo_creation_date=
|obo_creation_date=
|part_of=
|part_of=

Latest revision as of 17:25, 12 September 2014

Name:mesentery
Namespace:FANTOM
Definition:"Anatomical organ component composed of a double layer of serous membrane that suspends a viscus from the body wall or connects adjacent viscera and in doing so conveys blood vessels, lymphatics and nerves to and from the viscera. Examples: greater omentum, broad ligament of uterus, sigmoid mesocolon." [FMA:7144, Wikipedia:Mesentery, Wikipedia:Mesentery#Mesentery_.28general.29]
Xrefs:
links:

AAO:0011061
BTO:0001380
EV:0100083
FMA:7144
GAID:21
galen:Mesentery
[ Gray1038.png Gray1038.png]
[ 200px-Gray1038.png 200px-Gray1038.png]
MESH:A.01.047.025.600.451
ncithesaurus:Mesentery

SCTID:362707009
Synonyms: "generic mesentery" EXACT [Wikipedia:Mesentery]
"mesentery (generic)" EXACT [Wikipedia:Mesentery]
Comments:Note that in Uberon, this term is used in the generic sense, not necessarily restricted to the peritoneum, consistent with FMA. WP: "In anatomy, the mesentery is the double layer of peritoneum that suspends the jejunum and ileum from the posterior wall of the abdomen. Its meaning, however, is frequently extended to include double layers of peritoneum connecting various components of the abdominal cavity.". TODO - check. Consider FMA:259286 - Region of mesentery.
Alt_id: UBERON:FMA_7144-XAO_0000138-ZFA_0005129
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000042(serous membrane)
develops_from:UBERON:0002296(dorsal mesentery)



Children

is a:UBERON:0004854 (gastrointestinal system mesentery)
part of:CL:0002578 (mesenteric preadipocyte)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002095 (mesentery), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
8.98e-131FFCP PHASE2:Hg19::chr8:22436248..22436259,+#_8f1e89f7ef6369992fcfecbf80c10a50p11@PDLIM2
8.98e-131FFCP PHASE1:Hg19::chr9:124516729..124516752,+#_8f1e89f7ef6369992fcfecbf80c10a50p@chr9:124516729..124516752, +
8.98e-131FFCP PHASE2:Hg19::chr1:159172187..159172197,-#_8f1e89f7ef6369992fcfecbf80c10a50p1@uc001ftm.1
8.98e-131FFCP PHASE2:Hg19::chr9:127260615..127260651,-#_8f1e89f7ef6369992fcfecbf80c10a50p@chr9:127260615..127260651, -
8.98e-131FFCP PHASE1:Hg19::chr1:28520450..28520453,-#_8f1e89f7ef6369992fcfecbf80c10a50p21@PTAFR
8.98e-131FFCP PHASE2:Hg19::chr21:28820941..28820952,-#_8f1e89f7ef6369992fcfecbf80c10a50p2@ENST00000420186, p2@uc002ymh.2
8.98e-131FFCP PHASE1:Hg19::chr8:22424709..22424716,-#_8f1e89f7ef6369992fcfecbf80c10a50p2@ENST00000517384
8.98e-131FFCP PHASE2:Hg19::chr17:78171885..78171900,+#_8f1e89f7ef6369992fcfecbf80c10a50p@chr17:78171885..78171900, +
8.98e-131FFCP PHASE1:Hg19::chr1:157811772..157811796,-#_8f1e89f7ef6369992fcfecbf80c10a50p7@CD5L
8.98e-131FFCP PHASE1:Hg19::chr11:56859584..56859589,-#_8f1e89f7ef6369992fcfecbf80c10a50p@chr11:56859584..56859589, -
8.98e-131FFCP PHASE2:Hg19::chr9:133973310..133973321,+#_8f1e89f7ef6369992fcfecbf80c10a50p18@AIF1L
8.98e-131FFCP PHASE1:Hg19::chr16:84218794..84218800,+#_8f1e89f7ef6369992fcfecbf80c10a50p@chr16:84218794..84218800, +
8.98e-131FFCP PHASE2:Hg19::chr11:56859584..56859589,-#_8f1e89f7ef6369992fcfecbf80c10a50p@chr11:56859584..56859589, -
8.98e-131FFCP PHASE2:Hg19::chr9:127269462..127269484,-#_8f1e89f7ef6369992fcfecbf80c10a50p2@NR5A1
8.98e-131FFCP PHASE1:Hg19::chr21:28820892..28820899,-#_8f1e89f7ef6369992fcfecbf80c10a50p4@ENST00000420186, p4@uc002ymh.2
8.98e-131FFCP PHASE1:Hg19::chr11:925449..925458,+#_8f1e89f7ef6369992fcfecbf80c10a50p17@AP2A2
8.98e-131FFCP PHASE2:Hg19::chr6:152639579..152639586,-#_8f1e89f7ef6369992fcfecbf80c10a50p60@SYNE1
8.98e-131FFCP PHASE1:Hg19::chr19:32401253..32401271,-#_8f1e89f7ef6369992fcfecbf80c10a50p@chr19:32401253..32401271, -
8.98e-131FFCP PHASE2:Hg19::chr8:47834174..47834213,+#_8f1e89f7ef6369992fcfecbf80c10a50p1@ENST00000524012
8.98e-131FFCP PHASE2:Hg19::chr21:28820954..28820963,-#_8f1e89f7ef6369992fcfecbf80c10a50p3@ENST00000420186, p3@uc002ymh.2
8.98e-131FFCP PHASE1:Hg19::chr8:22424743..22424759,-#_8f1e89f7ef6369992fcfecbf80c10a50p1@ENST00000517384
8.98e-131FFCP PHASE1:Hg19::chrX:69645652..69645664,+#_8f1e89f7ef6369992fcfecbf80c10a50p7@GDPD2
8.98e-131FFCP PHASE2:Hg19::chr7:22259740..22259751,-#_8f1e89f7ef6369992fcfecbf80c10a50p19@RAPGEF5
8.98e-131FFCP PHASE1:Hg19::chr11:56859603..56859606,-#_8f1e89f7ef6369992fcfecbf80c10a50p@chr11:56859603..56859606, -
8.98e-131FFCP PHASE2:Hg19::chr11:56859603..56859606,-#_8f1e89f7ef6369992fcfecbf80c10a50p@chr11:56859603..56859606, -
8.98e-131FFCP PHASE2:Hg19::chr9:127269488..127269495,-#_8f1e89f7ef6369992fcfecbf80c10a50p5@NR5A1
8.98e-131FFCP PHASE1:Hg19::chr21:28820911..28820933,-#_8f1e89f7ef6369992fcfecbf80c10a50p1@ENST00000420186, p1@uc002ymh.2
8.98e-131FFCP PHASE1:Hg19::chr17:78171885..78171900,+#_8f1e89f7ef6369992fcfecbf80c10a50p@chr17:78171885..78171900, +
8.98e-131FFCP PHASE2:Hg19::chr9:124516729..124516752,+#_8f1e89f7ef6369992fcfecbf80c10a50p@chr9:124516729..124516752, +
8.98e-131FFCP PHASE2:Hg19::chr6:119812455..119812476,-#_8f1e89f7ef6369992fcfecbf80c10a50p1@uc003pyn.1
8.98e-131FFCP PHASE1:Hg19::chr9:79894790..79894797,+#_8f1e89f7ef6369992fcfecbf80c10a50p10@VPS13A
8.98e-131FFCP PHASE1:Hg19::chr10:98014908..98014919,-#_8f1e89f7ef6369992fcfecbf80c10a50p@chr10:98014908..98014919, -
8.98e-131FFCP PHASE1:Hg19::chr4:76901930..76901942,+#_8f1e89f7ef6369992fcfecbf80c10a50p1@ENST00000501239
8.98e-131FFCP PHASE2:Hg19::chr10:98014908..98014919,-#_8f1e89f7ef6369992fcfecbf80c10a50p@chr10:98014908..98014919, -
8.98e-131FFCP PHASE1:Hg19::chr8:22436248..22436259,+#_8f1e89f7ef6369992fcfecbf80c10a50p11@PDLIM2
8.98e-131FFCP PHASE1:Hg19::chr1:159172187..159172197,-#_8f1e89f7ef6369992fcfecbf80c10a50p1@uc001ftm.1
8.98e-131FFCP PHASE1:Hg19::chr11:56859608..56859619,-#_8f1e89f7ef6369992fcfecbf80c10a50p@chr11:56859608..56859619, -
8.98e-131FFCP PHASE1:Hg19::chr9:127269434..127269438,-#_8f1e89f7ef6369992fcfecbf80c10a50p8@NR5A1
8.98e-131FFCP PHASE2:Hg19::chr1:28520450..28520453,-#_8f1e89f7ef6369992fcfecbf80c10a50p21@PTAFR
8.98e-131FFCP PHASE2:Hg19::chr11:56859608..56859619,-#_8f1e89f7ef6369992fcfecbf80c10a50p@chr11:56859608..56859619, -
8.98e-131FFCP PHASE2:Hg19::chr1:157811772..157811796,-#_8f1e89f7ef6369992fcfecbf80c10a50p7@CD5L
8.98e-131FFCP PHASE1:Hg19::chr21:28820941..28820952,-#_8f1e89f7ef6369992fcfecbf80c10a50p2@ENST00000420186, p2@uc002ymh.2
8.98e-131FFCP PHASE1:Hg19::chr15:95561320..95561328,-#_8f1e89f7ef6369992fcfecbf80c10a50p@chr15:95561320..95561328, -
8.98e-131FFCP PHASE2:Hg19::chr8:22424709..22424716,-#_8f1e89f7ef6369992fcfecbf80c10a50p2@ENST00000517384
8.98e-131FFCP PHASE2:Hg19::chr21:28820892..28820899,-#_8f1e89f7ef6369992fcfecbf80c10a50p4@ENST00000420186, p4@uc002ymh.2
8.98e-131FFCP PHASE1:Hg19::chr9:127260615..127260651,-#_8f1e89f7ef6369992fcfecbf80c10a50p@chr9:127260615..127260651, -
8.98e-131FFCP PHASE2:Hg19::chr16:84218794..84218800,+#_8f1e89f7ef6369992fcfecbf80c10a50p@chr16:84218794..84218800, +
8.98e-131FFCP PHASE1:Hg19::chr6:152639579..152639586,-#_8f1e89f7ef6369992fcfecbf80c10a50p60@SYNE1
8.98e-131FFCP PHASE1:Hg19::chr10:98014943..98014960,-#_8f1e89f7ef6369992fcfecbf80c10a50p@chr10:98014943..98014960, -
8.98e-131FFCP PHASE2:Hg19::chr10:98014943..98014960,-#_8f1e89f7ef6369992fcfecbf80c10a50p@chr10:98014943..98014960, -
8.98e-131FFCP PHASE1:Hg19::chr14:75904485..75904519,+#_8f1e89f7ef6369992fcfecbf80c10a50p12@JDP2
8.98e-131FFCP PHASE1:Hg19::chr9:133973310..133973321,+#_8f1e89f7ef6369992fcfecbf80c10a50p18@AIF1L
8.98e-131FFCP PHASE2:Hg19::chr15:95561320..95561328,-#_8f1e89f7ef6369992fcfecbf80c10a50p@chr15:95561320..95561328, -
8.98e-131FFCP PHASE1:Hg19::chr11:56859638..56859643,-#_8f1e89f7ef6369992fcfecbf80c10a50p@chr11:56859638..56859643, -
8.98e-131FFCP PHASE1:Hg19::chr9:127269462..127269484,-#_8f1e89f7ef6369992fcfecbf80c10a50p2@NR5A1
8.98e-131FFCP PHASE1:Hg19::chr8:47834174..47834213,+#_8f1e89f7ef6369992fcfecbf80c10a50p1@ENST00000524012
8.98e-131FFCP PHASE2:Hg19::chr11:56859638..56859643,-#_8f1e89f7ef6369992fcfecbf80c10a50p@chr11:56859638..56859643, -
8.98e-131FFCP PHASE2:Hg19::chr19:32401253..32401271,-#_8f1e89f7ef6369992fcfecbf80c10a50p@chr19:32401253..32401271, -
8.98e-131FFCP PHASE2:Hg19::chr8:22424743..22424759,-#_8f1e89f7ef6369992fcfecbf80c10a50p1@ENST00000517384
8.98e-131FFCP PHASE2:Hg19::chrX:69645652..69645664,+#_8f1e89f7ef6369992fcfecbf80c10a50p7@GDPD2
8.98e-131FFCP PHASE1:Hg19::chr21:28820954..28820963,-#_8f1e89f7ef6369992fcfecbf80c10a50p3@ENST00000420186, p3@uc002ymh.2
8.98e-131FFCP PHASE1:Hg19::chr11:1891326..1891337,-#_8f1e89f7ef6369992fcfecbf80c10a50p@chr11:1891326..1891337, -
8.98e-131FFCP PHASE2:Hg19::chr11:1891326..1891337,-#_8f1e89f7ef6369992fcfecbf80c10a50p@chr11:1891326..1891337, -
8.98e-131FFCP PHASE2:Hg19::chr21:28820911..28820933,-#_8f1e89f7ef6369992fcfecbf80c10a50p1@ENST00000420186, p1@uc002ymh.2
8.98e-131FFCP PHASE2:Hg19::chr11:925449..925458,+#_8f1e89f7ef6369992fcfecbf80c10a50p17@AP2A2
8.98e-131FFCP PHASE2:Hg19::chr9:127269434..127269438,-#_8f1e89f7ef6369992fcfecbf80c10a50p8@NR5A1
8.98e-131FFCP PHASE1:Hg19::chr6:119812455..119812476,-#_8f1e89f7ef6369992fcfecbf80c10a50p1@uc003pyn.1
8.98e-131FFCP PHASE2:Hg19::chr14:75904485..75904519,+#_8f1e89f7ef6369992fcfecbf80c10a50p12@JDP2
8.98e-131FFCP PHASE1:Hg19::chr11:56859693..56859701,-#_8f1e89f7ef6369992fcfecbf80c10a50p@chr11:56859693..56859701, -
8.98e-131FFCP PHASE1:Hg19::chr7:22259740..22259751,-#_8f1e89f7ef6369992fcfecbf80c10a50p19@RAPGEF5
8.98e-131FFCP PHASE2:Hg19::chr9:79894790..79894797,+#_8f1e89f7ef6369992fcfecbf80c10a50p10@VPS13A
8.98e-131FFCP PHASE1:Hg19::chr9:127269488..127269495,-#_8f1e89f7ef6369992fcfecbf80c10a50p5@NR5A1
8.98e-131FFCP PHASE2:Hg19::chr4:76901930..76901942,+#_8f1e89f7ef6369992fcfecbf80c10a50p1@ENST00000501239
8.98e-131FFCP PHASE2:Hg19::chr11:56859693..56859701,-#_8f1e89f7ef6369992fcfecbf80c10a50p@chr11:56859693..56859701, -
6.24e-88FFCP PHASE1:Hg19::chr22:36718586..36718593,-#_f1b5e8c1e1ed259a48b0993f42f76922p@chr22:36718586..36718593, -
6.24e-88FFCP PHASE1:Hg19::chr11:56859722..56859732,-#_f1b5e8c1e1ed259a48b0993f42f76922p@chr11:56859722..56859732, -
6.24e-88FFCP PHASE2:Hg19::chr21:40459334..40459341,+#_f1b5e8c1e1ed259a48b0993f42f76922p@chr21:40459334..40459341, +
6.24e-88FFCP PHASE1:Hg19::chr4:146461014..146461025,+#_f1b5e8c1e1ed259a48b0993f42f76922p@chr4:146461014..146461025, +
6.24e-88FFCP PHASE2:Hg19::chr11:56859722..56859732,-#_f1b5e8c1e1ed259a48b0993f42f76922p@chr11:56859722..56859732, -
6.24e-88FFCP PHASE1:Hg19::chr3:130267501..130267516,+#_f1b5e8c1e1ed259a48b0993f42f76922p@chr3:130267501..130267516, +
6.24e-88FFCP PHASE1:Hg19::chr9:127267367..127267383,+#_f1b5e8c1e1ed259a48b0993f42f76922p@chr9:127267367..127267383, +
6.24e-88FFCP PHASE1:Hg19::chr1:21011608..21011618,-#_f1b5e8c1e1ed259a48b0993f42f76922p15@KIF17
6.24e-88FFCP PHASE2:Hg19::chr22:36718586..36718593,-#_f1b5e8c1e1ed259a48b0993f42f76922p@chr22:36718586..36718593, -
6.24e-88FFCP PHASE1:Hg19::chr19:32401274..32401289,-#_f1b5e8c1e1ed259a48b0993f42f76922p@chr19:32401274..32401289, -
6.24e-88FFCP PHASE1:Hg19::chr21:40459334..40459341,+#_f1b5e8c1e1ed259a48b0993f42f76922p@chr21:40459334..40459341, +
6.24e-88FFCP PHASE2:Hg19::chr9:127267367..127267383,+#_f1b5e8c1e1ed259a48b0993f42f76922p@chr9:127267367..127267383, +
6.24e-88FFCP PHASE2:Hg19::chr4:146461014..146461025,+#_f1b5e8c1e1ed259a48b0993f42f76922p@chr4:146461014..146461025, +
6.24e-88FFCP PHASE2:Hg19::chr3:130267501..130267516,+#_f1b5e8c1e1ed259a48b0993f42f76922p@chr3:130267501..130267516, +
6.24e-88FFCP PHASE2:Hg19::chr1:21011608..21011618,-#_f1b5e8c1e1ed259a48b0993f42f76922p15@KIF17
6.24e-88FFCP PHASE2:Hg19::chr19:32401274..32401289,-#_f1b5e8c1e1ed259a48b0993f42f76922p@chr19:32401274..32401289, -
9.74e-88FFCP PHASE1:Hg19::chr12:72481040..72481051,+#_6b8b08ed42f2c4c673e375682dac86cfp19@TRHDE
9.74e-88FFCP PHASE1:Hg19::chr14:24168655..24168686,+#_6b8b08ed42f2c4c673e375682dac86cfp@chr14:24168655..24168686, +
9.74e-88FFCP PHASE1:Hg19::chr2:1508349..1508357,+#_6b8b08ed42f2c4c673e375682dac86cfp@chr2:1508349..1508357, +
9.74e-88FFCP PHASE2:Hg19::chr12:72481040..72481051,+#_6b8b08ed42f2c4c673e375682dac86cfp19@TRHDE
9.74e-88FFCP PHASE1:Hg19::chr16:70680361..70680370,+#_6b8b08ed42f2c4c673e375682dac86cfp6@IL34
9.74e-88FFCP PHASE2:Hg19::chr2:128321491..128321509,+#_6b8b08ed42f2c4c673e375682dac86cfp@chr2:128321491..128321509, +
9.74e-88FFCP PHASE2:Hg19::chr14:24168655..24168686,+#_6b8b08ed42f2c4c673e375682dac86cfp@chr14:24168655..24168686, +
9.74e-88FFCP PHASE2:Hg19::chr7:151070957..151070988,+#_6b8b08ed42f2c4c673e375682dac86cfp@chr7:151070957..151070988, +
9.74e-88FFCP PHASE2:Hg19::chr2:1508349..1508357,+#_6b8b08ed42f2c4c673e375682dac86cfp@chr2:1508349..1508357, +
9.74e-88FFCP PHASE1:Hg19::chr7:151070957..151070988,+#_6b8b08ed42f2c4c673e375682dac86cfp@chr7:151070957..151070988, +

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