Personal tools

UBERON:0002082: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0002082
|alt_id=UBERON:FMA_7100-MA_0000091-ZFA_0000009
|name=cardiac ventricle
|namespace=
|def="Cardiac chamber which consists of a wall that surrounds the cavity of a ventricle." [FMA:7100]
|xref=AAO:0010249;;BTO:0000862;;EFO:0000317;;EHDAA2:0002178;;EMAPA:17331;;EV:0100020;;FMA:7100;;GAID:568;;MA:0000091;;MESH:A.07.541.560;;ncithesaurus:Cardiac_Ventricle;;OpenCyc:Mx4rvVjj1pwpEbGdrcN5Y29ycA;;SCTID:277699000;;TAO:0000009;;VHOG:0000435;;XAO:0003193;;ZFA:0000009
|is_a=UBERON:0002300;;UBERON:0004151
|synonym="heart ventricle" EXACT [];;"lower chamber of heart" EXACT [];;"ventricle" RELATED [];;"ventricle of heart" EXACT []
|comment=
|comment=
|alt_id=UBERON:FMA_7100-MA_0000091-ZFA_0000009
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Cardiac chamber which consists of a wall that surrounds the cavity of a ventricle." [FMA:7100]
|subset=uberon_slim;;vertebrate_core
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=UBERON:0010226
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0002082
|is_a=UBERON:0004151
|is_obsolete=
|located_in=
|located_in=
|part_of=UBERON:0000948
|name=cardiac ventricle
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|namespace=FANTOM
|is_obsolete=
|obo_creation_date=
|part_of=
|preceded_by=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "A chamber of the heart that receives blood from one or more atria and pumps it by muscular contraction into the arteries.[AAO]" xsd:string;;UBPROP:0000001 "One of four heart chambers.[TAO]" xsd:string
|subset=uberon_slim;;vertebrate_core
|synonym="heart ventricle" EXACT [];;"lower chamber of heart" EXACT [];;"ventricle" BROAD [];;"ventricle of heart" EXACT []
|union_of=
|xref=AAO:0010249;;BTO:0000862;;EFO:0000317;;EHDAA2:0004164;;EHDAA:1912;;EMAPA:17331;;EV:0100020;;FMA:7100;;GAID:568;;galen:Ventricle;;MA:0000091;;MAT:0000497;;MESH:A.07.541.560;;ncithesaurus:Cardiac_Ventricle;;OpenCyc:Mx4rvVjj1pwpEbGdrcN5Y29ycA;;SCTID:277699000;;TAO:0000009;;VHOG:0000435;;XAO:0003193;;ZFA:0000009
}}
}}

Latest revision as of 17:25, 12 September 2014

Name:cardiac ventricle
Namespace:FANTOM
Definition:"Cardiac chamber which consists of a wall that surrounds the cavity of a ventricle." [FMA:7100]
Xrefs:
links:

AAO:0010249
BTO:0000862
EFO:0000317
EHDAA2:0004164
EHDAA:1912
EMAPA:17331
EV:0100020
FMA:7100
GAID:568
galen:Ventricle
MA:0000091
MAT:0000497
MESH:A.07.541.560
ncithesaurus:Cardiac_Ventricle
OpenCyc:Mx4rvVjj1pwpEbGdrcN5Y29ycA
SCTID:277699000
TAO:0000009
VHOG:0000435
XAO:0003193

ZFA:0000009
Synonyms: "heart ventricle" EXACT []
"lower chamber of heart" EXACT []
"ventricle" BROAD []
"ventricle of heart" EXACT []
Alt_id: UBERON:FMA_7100-MA_0000091-ZFA_0000009
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004151(cardiac chamber)
develops_from:UBERON:0010226(future cardiac ventricle)



Children

is a:UBERON:0002084 (heart left ventricle)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002082 (cardiac ventricle), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
9.37e-99FFCP PHASE2:Hg19::chr3:37061825..37061832,+#_72c1b25f4040bc111c5ddf79f1dfc0a3p@chr3:37061825..37061832, +
9.37e-99FFCP PHASE1:Hg19::chr3:37061825..37061832,+#_72c1b25f4040bc111c5ddf79f1dfc0a3p@chr3:37061825..37061832, +
2.55e-98FFCP PHASE2:Hg19::chr10:35032687..35032696,-#_e09649b8dd5c8f653f9b85c305465373p@chr10:35032687..35032696, -
2.55e-98FFCP PHASE2:Hg19::chr8:124033810..124033819,-#_e09649b8dd5c8f653f9b85c305465373p@chr8:124033810..124033819, -
2.55e-98FFCP PHASE1:Hg19::chr8:124033810..124033819,-#_e09649b8dd5c8f653f9b85c305465373p@chr8:124033810..124033819, -
2.55e-98FFCP PHASE1:Hg19::chr10:35032687..35032696,-#_e09649b8dd5c8f653f9b85c305465373p@chr10:35032687..35032696, -
2.55e-98FFCP PHASE1:Hg19::chr16:46766402..46766412,-#_e09649b8dd5c8f653f9b85c305465373p@chr16:46766402..46766412, -
2.55e-98FFCP PHASE2:Hg19::chr4:53417811..53417814,-#_e09649b8dd5c8f653f9b85c305465373p@chr4:53417811..53417814, -
2.55e-98FFCP PHASE1:Hg19::chr4:53417811..53417814,-#_e09649b8dd5c8f653f9b85c305465373p@chr4:53417811..53417814, -
2.55e-98FFCP PHASE2:Hg19::chr16:46766402..46766412,-#_e09649b8dd5c8f653f9b85c305465373p@chr16:46766402..46766412, -
1.23e-66FFCP PHASE2:Hg19::chr5:79026919..79026926,+#_5808d8e17afaea49c9b25a13e588a92cp@chr5:79026919..79026926, +
1.23e-66FFCP PHASE2:Hg19::chr5:79030927..79030935,+#_5808d8e17afaea49c9b25a13e588a92cp49@CMYA5
1.23e-66FFCP PHASE1:Hg19::chr5:79026919..79026926,+#_5808d8e17afaea49c9b25a13e588a92cp@chr5:79026919..79026926, +
1.23e-66FFCP PHASE1:Hg19::chr5:79030927..79030935,+#_5808d8e17afaea49c9b25a13e588a92cp49@CMYA5
1.23e-66FFCP PHASE2:Hg19::chr3:46902281..46902288,-#_5808d8e17afaea49c9b25a13e588a92cp@chr3:46902281..46902288, -
1.23e-66FFCP PHASE1:Hg19::chr3:46902281..46902288,-#_5808d8e17afaea49c9b25a13e588a92cp@chr3:46902281..46902288, -
2.39e-66FFCP PHASE1:Hg19::chr1:202431836..202431849,+#_3b000be74f5622f5c2efb4ba6e62d8a9p18@PPP1R12B
2.39e-66FFCP PHASE1:Hg19::chr22:18403223..18403228,-#_3b000be74f5622f5c2efb4ba6e62d8a9p@chr22:18403223..18403228, -
2.39e-66FFCP PHASE2:Hg19::chr16:46737348..46737351,-#_3b000be74f5622f5c2efb4ba6e62d8a9p@chr16:46737348..46737351, -
2.39e-66FFCP PHASE2:Hg19::chr12:660023..660044,+#_3b000be74f5622f5c2efb4ba6e62d8a9p@chr12:660023..660044, +
2.39e-66FFCP PHASE2:Hg19::chr1:202431911..202431922,+#_3b000be74f5622f5c2efb4ba6e62d8a9p12@PPP1R12B
2.39e-66FFCP PHASE1:Hg19::chr1:164881611..164881641,-#_3b000be74f5622f5c2efb4ba6e62d8a9p@chr1:164881611..164881641, -
2.39e-66FFCP PHASE1:Hg19::chr7:35294320..35294351,+#_3b000be74f5622f5c2efb4ba6e62d8a9p@chr7:35294320..35294351, +
2.39e-66FFCP PHASE2:Hg19::chr18:6255319..6255336,-#_3b000be74f5622f5c2efb4ba6e62d8a9p@chr18:6255319..6255336, -
2.39e-66FFCP PHASE2:Hg19::chr7:35294320..35294351,+#_3b000be74f5622f5c2efb4ba6e62d8a9p@chr7:35294320..35294351, +
2.39e-66FFCP PHASE2:Hg19::chr22:18403223..18403228,-#_3b000be74f5622f5c2efb4ba6e62d8a9p@chr22:18403223..18403228, -
2.39e-66FFCP PHASE2:Hg19::chr1:202431836..202431849,+#_3b000be74f5622f5c2efb4ba6e62d8a9p18@PPP1R12B
2.39e-66FFCP PHASE2:Hg19::chr1:164881611..164881641,-#_3b000be74f5622f5c2efb4ba6e62d8a9p@chr1:164881611..164881641, -
2.39e-66FFCP PHASE1:Hg19::chr16:46737348..46737351,-#_3b000be74f5622f5c2efb4ba6e62d8a9p@chr16:46737348..46737351, -
2.39e-66FFCP PHASE1:Hg19::chr18:6255319..6255336,-#_3b000be74f5622f5c2efb4ba6e62d8a9p@chr18:6255319..6255336, -
2.39e-66FFCP PHASE1:Hg19::chr12:660023..660044,+#_3b000be74f5622f5c2efb4ba6e62d8a9p@chr12:660023..660044, +
2.39e-66FFCP PHASE1:Hg19::chr1:202431911..202431922,+#_3b000be74f5622f5c2efb4ba6e62d8a9p12@PPP1R12B
4.66e-66FFCP PHASE1:Hg19::chr1:1154360..1154365,-#_e6b3ef65d3952586185ea3c5a22975fap@chr1:1154360..1154365, -
4.66e-66FFCP PHASE1:Hg19::chr7:31933122..31933152,-#_e6b3ef65d3952586185ea3c5a22975fap@chr7:31933122..31933152, -
4.66e-66FFCP PHASE1:Hg19::chr20:20069786..20069797,-#_e6b3ef65d3952586185ea3c5a22975fap@chr20:20069786..20069797, -
4.66e-66FFCP PHASE2:Hg19::chr2:179581909..179581915,-#_e6b3ef65d3952586185ea3c5a22975fap@chr2:179581909..179581915, -
4.66e-66FFCP PHASE2:Hg19::chr2:170374754..170374760,+#_e6b3ef65d3952586185ea3c5a22975fap@chr2:170374754..170374760, +
4.66e-66FFCP PHASE2:Hg19::chr7:31933122..31933152,-#_e6b3ef65d3952586185ea3c5a22975fap@chr7:31933122..31933152, -
4.66e-66FFCP PHASE1:Hg19::chr20:55732283..55732288,-#_e6b3ef65d3952586185ea3c5a22975fap@chr20:55732283..55732288, -
4.66e-66FFCP PHASE1:Hg19::chr2:101878835..101878850,+#_e6b3ef65d3952586185ea3c5a22975fap16@C2orf29
4.66e-66FFCP PHASE2:Hg19::chr1:1154360..1154365,-#_e6b3ef65d3952586185ea3c5a22975fap@chr1:1154360..1154365, -
4.66e-66FFCP PHASE2:Hg19::chr10:29812740..29812749,-#_e6b3ef65d3952586185ea3c5a22975fap@chr10:29812740..29812749, -
4.66e-66FFCP PHASE2:Hg19::chr20:20069786..20069797,-#_e6b3ef65d3952586185ea3c5a22975fap@chr20:20069786..20069797, -
4.66e-66FFCP PHASE2:Hg19::chr2:101878835..101878850,+#_e6b3ef65d3952586185ea3c5a22975fap16@C2orf29
4.66e-66FFCP PHASE2:Hg19::chr3:46901107..46901114,-#_e6b3ef65d3952586185ea3c5a22975fap@chr3:46901107..46901114, -
4.66e-66FFCP PHASE1:Hg19::chr3:46901107..46901114,-#_e6b3ef65d3952586185ea3c5a22975fap@chr3:46901107..46901114, -
4.66e-66FFCP PHASE1:Hg19::chr4:26165179..26165190,+#_e6b3ef65d3952586185ea3c5a22975fap47@RBPJ
4.66e-66FFCP PHASE1:Hg19::chr10:29812740..29812749,-#_e6b3ef65d3952586185ea3c5a22975fap@chr10:29812740..29812749, -
4.66e-66FFCP PHASE2:Hg19::chr20:55732283..55732288,-#_e6b3ef65d3952586185ea3c5a22975fap@chr20:55732283..55732288, -
4.66e-66FFCP PHASE1:Hg19::chr2:179581909..179581915,-#_e6b3ef65d3952586185ea3c5a22975fap@chr2:179581909..179581915, -
4.66e-66FFCP PHASE1:Hg19::chr2:170374754..170374760,+#_e6b3ef65d3952586185ea3c5a22975fap@chr2:170374754..170374760, +
4.66e-66FFCP PHASE2:Hg19::chr4:26165179..26165190,+#_e6b3ef65d3952586185ea3c5a22975fap47@RBPJ
1.46e-50FFCP PHASE1:Hg19::chr5:80555040..80555044,+#_bb70a1ea4ef503491f7373ad6e15208fp@chr5:80555040..80555044, +
1.46e-50FFCP PHASE2:Hg19::chr14:23893278..23893279,-#_bb70a1ea4ef503491f7373ad6e15208fp41@MYH7
1.46e-50FFCP PHASE2:Hg19::chr5:80555040..80555044,+#_bb70a1ea4ef503491f7373ad6e15208fp@chr5:80555040..80555044, +
1.46e-50FFCP PHASE1:Hg19::chr12:56091538..56091540,-#_bb70a1ea4ef503491f7373ad6e15208fp@chr12:56091538..56091540, -
1.46e-50FFCP PHASE2:Hg19::chr12:56091538..56091540,-#_bb70a1ea4ef503491f7373ad6e15208fp@chr12:56091538..56091540, -
1.46e-50FFCP PHASE1:Hg19::chr14:23893278..23893279,-#_bb70a1ea4ef503491f7373ad6e15208fp41@MYH7
2.42e-50FFCP PHASE1:Hg19::chr2:220495902..220495903,+#_f4a770a309b857e96e32fe55c0213606p25@SLC4A3
2.42e-50FFCP PHASE2:Hg19::chr8:18708993..18709004,-#_f4a770a309b857e96e32fe55c0213606p@chr8:18708993..18709004, -
2.42e-50FFCP PHASE1:Hg19::chr8:18708993..18709004,-#_f4a770a309b857e96e32fe55c0213606p@chr8:18708993..18709004, -
2.42e-50FFCP PHASE1:Hg19::chr4:182186203..182186217,-#_f4a770a309b857e96e32fe55c0213606p1@ENST00000512547
2.42e-50FFCP PHASE1:Hg19::chr1:202431859..202431868,+#_f4a770a309b857e96e32fe55c0213606p20@PPP1R12B
2.42e-50FFCP PHASE1:Hg19::chr15:89647309..89647352,+#_f4a770a309b857e96e32fe55c0213606p@chr15:89647309..89647352, +
2.42e-50FFCP PHASE2:Hg19::chr4:182186203..182186217,-#_f4a770a309b857e96e32fe55c0213606p1@ENST00000512547
2.42e-50FFCP PHASE2:Hg19::chr2:220495902..220495903,+#_f4a770a309b857e96e32fe55c0213606p25@SLC4A3
2.42e-50FFCP PHASE2:Hg19::chr15:89647309..89647352,+#_f4a770a309b857e96e32fe55c0213606p@chr15:89647309..89647352, +
2.42e-50FFCP PHASE1:Hg19::chr5:79028810..79028818,+#_f4a770a309b857e96e32fe55c0213606p50@CMYA5
2.42e-50FFCP PHASE1:Hg19::chr2:109384584..109384612,+#_f4a770a309b857e96e32fe55c0213606p10@RANBP2
2.42e-50FFCP PHASE2:Hg19::chr5:79028810..79028818,+#_f4a770a309b857e96e32fe55c0213606p50@CMYA5
2.42e-50FFCP PHASE2:Hg19::chr6:164383767..164383779,-#_f4a770a309b857e96e32fe55c0213606p@chr6:164383767..164383779, -
2.42e-50FFCP PHASE1:Hg19::chr6:164383767..164383779,-#_f4a770a309b857e96e32fe55c0213606p@chr6:164383767..164383779, -
2.42e-50FFCP PHASE2:Hg19::chr1:202431859..202431868,+#_f4a770a309b857e96e32fe55c0213606p20@PPP1R12B
2.42e-50FFCP PHASE2:Hg19::chr6:144329347..144329355,+#_f4a770a309b857e96e32fe55c0213606p@chr6:144329347..144329355, +
2.42e-50FFCP PHASE1:Hg19::chr6:144329347..144329355,+#_f4a770a309b857e96e32fe55c0213606p@chr6:144329347..144329355, +
2.42e-50FFCP PHASE1:Hg19::chr6:123760856..123760861,+#_f4a770a309b857e96e32fe55c0213606p4@ENST00000427828, p4@ENST00000434768
2.42e-50FFCP PHASE2:Hg19::chr2:109384584..109384612,+#_f4a770a309b857e96e32fe55c0213606p10@RANBP2
2.42e-50FFCP PHASE2:Hg19::chr6:123760856..123760861,+#_f4a770a309b857e96e32fe55c0213606p4@ENST00000427828, p4@ENST00000434768
3.99e-50FFCP PHASE2:Hg19::chr2:15679051..15679071,-#_19111699251c18cf646fd2601d39ba7ep@chr2:15679051..15679071, -
3.99e-50FFCP PHASE2:Hg19::chr15:44172060..44172067,-#_19111699251c18cf646fd2601d39ba7ep@chr15:44172060..44172067, -
3.99e-50FFCP PHASE2:Hg19::chr18:19769123..19769149,+#_19111699251c18cf646fd2601d39ba7ep@chr18:19769123..19769149, +
3.99e-50FFCP PHASE1:Hg19::chr2:179414945..179414955,-#_19111699251c18cf646fd2601d39ba7ep@chr2:179414945..179414955, -
3.99e-50FFCP PHASE2:Hg19::chr12:57112800..57112809,-#_19111699251c18cf646fd2601d39ba7ep@chr12:57112800..57112809, -
3.99e-50FFCP PHASE1:Hg19::chr14:23854188..23854193,-#_19111699251c18cf646fd2601d39ba7ep@chr14:23854188..23854193, -
3.99e-50FFCP PHASE2:Hg19::chr4:119953362..119953372,+#_19111699251c18cf646fd2601d39ba7ep@chr4:119953362..119953372, +
3.99e-50FFCP PHASE1:Hg19::chr4:119953362..119953372,+#_19111699251c18cf646fd2601d39ba7ep@chr4:119953362..119953372, +
3.99e-50FFCP PHASE2:Hg19::chr2:179414945..179414955,-#_19111699251c18cf646fd2601d39ba7ep@chr2:179414945..179414955, -
3.99e-50FFCP PHASE1:Hg19::chr18:19769123..19769149,+#_19111699251c18cf646fd2601d39ba7ep@chr18:19769123..19769149, +
3.99e-50FFCP PHASE1:Hg19::chr2:15679051..15679071,-#_19111699251c18cf646fd2601d39ba7ep@chr2:15679051..15679071, -
3.99e-50FFCP PHASE1:Hg19::chr12:57112800..57112809,-#_19111699251c18cf646fd2601d39ba7ep@chr12:57112800..57112809, -
3.99e-50FFCP PHASE2:Hg19::chr3:69168395..69168418,-#_19111699251c18cf646fd2601d39ba7ep@chr3:69168395..69168418, -
3.99e-50FFCP PHASE1:Hg19::chr3:69168395..69168418,-#_19111699251c18cf646fd2601d39ba7ep@chr3:69168395..69168418, -
3.99e-50FFCP PHASE2:Hg19::chr14:23854188..23854193,-#_19111699251c18cf646fd2601d39ba7ep@chr14:23854188..23854193, -
3.99e-50FFCP PHASE1:Hg19::chr15:44172060..44172067,-#_19111699251c18cf646fd2601d39ba7ep@chr15:44172060..44172067, -
6.58e-50FFCP PHASE2:Hg19::chr16:8736179..8736193,+#_51c8ec90f572f75771b035157b73a363p@chr16:8736179..8736193, +
6.58e-50FFCP PHASE2:Hg19::chr2:179417310..179417315,-#_51c8ec90f572f75771b035157b73a363p@chr2:179417310..179417315, -
6.58e-50FFCP PHASE2:Hg19::chr11:20070858..20070863,-#_51c8ec90f572f75771b035157b73a363p5@NAV2-AS2
6.58e-50FFCP PHASE2:Hg19::chr2:179454262..179454272,-#_51c8ec90f572f75771b035157b73a363p@chr2:179454262..179454272, -
6.58e-50FFCP PHASE1:Hg19::chr9:38311053..38311058,+#_51c8ec90f572f75771b035157b73a363p@chr9:38311053..38311058, +
6.58e-50FFCP PHASE2:Hg19::chr2:179454661..179454668,-#_51c8ec90f572f75771b035157b73a363p@chr2:179454661..179454668, -










Property "Property value" (as page type) with input value "UBPROP:0000001 "A chamber of the heart that receives blood from one or more atria and pumps it by muscular contraction into the arteries.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "One of four heart chambers.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0002082&oldid=3277364"