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{{UBERON
{{UBERON
|id=UBERON:0001961
|alt_id=UBERON:FMA_62819-MA_0000140
|name=mucosa-associated lymphoid tissue
|namespace=
|def="diffuse system of small concentrations of lymphoid tissue found in various sites of the body such as the gastrointestinal tract, thyroid, breast, lung, salivary glands, eye, and skin[WP]. Mucosal-associated lymphoid tissue is typically found as nodules associated with mucosal epithelia with distinct internal structures including B- and T-zones for the activation of lymphocytes[GO]." [Wikipedia:Mucosa-associated_lymphoid_tissue]
|xref=FMA:62819;;MA:0000140;;ncithesaurus:Mucosa-Associated_Lymphoid_Tissue
|is_a=UBERON:0001744
|synonym="epithelio-lymphoid tissue" EXACT [];;"MALT" EXACT [];;"mucosa associated lymphatic tissue" EXACT [];;"mucosa associated lymphoid tissue" EXACT [];;"mucosa-associated lymphoid tissue" EXACT [GO:0048537];;"mucosal-associated lymphatic tissue" EXACT [GO:0048537];;"mucosal-associated lymphoid tissue" EXACT [GO:0048537]
|comment=This class was created automatically from a combination of ontologies
|comment=This class was created automatically from a combination of ontologies
|alt_id=UBERON:FMA_62819-MA_0000140
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="diffuse system of small concentrations of lymphoid tissue found in various sites of the body such as the gastrointestinal tract, thyroid, breast, lung, salivary glands, eye, and skin[WP]. Mucosal-associated lymphoid tissue is typically found as nodules associated with mucosal epithelia with distinct internal structures including B- and T-zones for the activation of lymphocytes[GO]." [Wikipedia:Mucosa-associated_lymphoid_tissue]
|subset=uberon_slim
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0001961
|is_a=UBERON:0012069
|is_obsolete=
|located_in=
|located_in=
|name=mucosa-associated lymphoid tissue
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000344
|part_of=UBERON:0000344
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=uberon_slim
|synonym="epithelio-lymphoid tissue" EXACT [];;"MALT" EXACT [];;"mucosa associated lymphatic tissue" EXACT [];;"mucosa associated lymphoid tissue" EXACT [];;"mucosa-associated lymphoid tissue" EXACT [GO:0048537];;"mucosal-associated lymphatic tissue" EXACT [GO:0048537];;"mucosal-associated lymphoid tissue" EXACT [GO:0048537]
|union_of=
|xref=FMA:62819;;MA:0000140;;ncithesaurus:Mucosa-Associated_Lymphoid_Tissue
}}
}}

Latest revision as of 17:23, 12 September 2014

Name:mucosa-associated lymphoid tissue
Namespace:FANTOM
Definition:"diffuse system of small concentrations of lymphoid tissue found in various sites of the body such as the gastrointestinal tract, thyroid, breast, lung, salivary glands, eye, and skin[WP]. Mucosal-associated lymphoid tissue is typically found as nodules associated with mucosal epithelia with distinct internal structures including B- and T-zones for the activation of lymphocytes[GO]." [Wikipedia:Mucosa-associated_lymphoid_tissue]
Xrefs:
links:

FMA:62819
MA:0000140

ncithesaurus:Mucosa-Associated_Lymphoid_Tissue
Synonyms: "epithelio-lymphoid tissue" EXACT []
"MALT" EXACT []
"mucosa associated lymphatic tissue" EXACT []
"mucosa associated lymphoid tissue" EXACT []
"mucosa-associated lymphoid tissue" EXACT [GO:0048537]
"mucosal-associated lymphatic tissue" EXACT [GO:0048537]
"mucosal-associated lymphoid tissue" EXACT [GO:0048537]
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:FMA_62819-MA_0000140
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0012069(epithelium-associated lymphoid tissue)
part_of:UBERON:0000344(mucosa)



Children

is a:UBERON:0001962 (gut-associated lymphoid tissue)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001961 (mucosa-associated lymphoid tissue), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr12:53200416..53200421,+#_71e06f13452d3b007fcf29e7d9a7066ep7@CU692075
5.42e-195FFCP PHASE2:Hg19::chr20:21684387..21684390,-#_71e06f13452d3b007fcf29e7d9a7066ep2@ENST00000424377
5.42e-195FFCP PHASE2:Hg19::chr19:5850872..5850893,-#_71e06f13452d3b007fcf29e7d9a7066ep@chr19:5850872..5850893, -
5.42e-195FFCP PHASE2:Hg19::chr16:12334592..12334599,+#_71e06f13452d3b007fcf29e7d9a7066ep@chr16:12334592..12334599, +
5.42e-195FFCP PHASE2:Hg19::chr14:107049312..107049315,-#_71e06f13452d3b007fcf29e7d9a7066ep2@IGHV3-53
5.42e-195FFCP PHASE2:Hg19::chr12:53200416..53200421,+#_71e06f13452d3b007fcf29e7d9a7066ep7@CU692075
5.42e-195FFCP PHASE1:Hg19::chr16:12334592..12334599,+#_71e06f13452d3b007fcf29e7d9a7066ep@chr16:12334592..12334599, +
5.42e-195FFCP PHASE2:Hg19::chr16:12337006..12337010,+#_71e06f13452d3b007fcf29e7d9a7066ep@chr16:12337006..12337010, +
5.42e-195FFCP PHASE1:Hg19::chr14:107049312..107049315,-#_71e06f13452d3b007fcf29e7d9a7066ep2@IGHV3-53
5.42e-195FFCP PHASE1:Hg19::chr2:89459813..89459818,-#_71e06f13452d3b007fcf29e7d9a7066ep1@IGKV6-21
5.42e-195FFCP PHASE1:Hg19::chr20:21684387..21684390,-#_71e06f13452d3b007fcf29e7d9a7066ep2@ENST00000424377
5.42e-195FFCP PHASE1:Hg19::chr16:12337006..12337010,+#_71e06f13452d3b007fcf29e7d9a7066ep@chr16:12337006..12337010, +
5.42e-195FFCP PHASE1:Hg19::chr19:5850872..5850893,-#_71e06f13452d3b007fcf29e7d9a7066ep@chr19:5850872..5850893, -
5.42e-195FFCP PHASE2:Hg19::chr2:89459813..89459818,-#_71e06f13452d3b007fcf29e7d9a7066ep1@IGKV6-21
9.37e-99FFCP PHASE2:Hg19::chr11:1263622..1263627,+#_f363284ca4f003686a89986e6532b61ap@chr11:1263622..1263627, +
9.37e-99FFCP PHASE1:Hg19::chr20:31611454..31611461,+#_f363284ca4f003686a89986e6532b61ap8@BPIFB6
9.37e-99FFCP PHASE1:Hg19::chr7:25361115..25361117,+#_f363284ca4f003686a89986e6532b61ap@chr7:25361115..25361117, +
9.37e-99FFCP PHASE2:Hg19::chr7:25361115..25361117,+#_f363284ca4f003686a89986e6532b61ap@chr7:25361115..25361117, +
9.37e-99FFCP PHASE1:Hg19::chr6:168095835..168095838,-#_f363284ca4f003686a89986e6532b61ap@chr6:168095835..168095838, -
9.37e-99FFCP PHASE1:Hg19::chr11:1249994..1249999,+#_f363284ca4f003686a89986e6532b61ap30@MUC5B
9.37e-99FFCP PHASE2:Hg19::chr19:14662395..14662414,+#_f363284ca4f003686a89986e6532b61ap@chr19:14662395..14662414, +
9.37e-99FFCP PHASE1:Hg19::chr20:31611186..31611191,+#_f363284ca4f003686a89986e6532b61ap10@BPIFB6
9.37e-99FFCP PHASE2:Hg19::chr20:31611454..31611461,+#_f363284ca4f003686a89986e6532b61ap8@BPIFB6
9.37e-99FFCP PHASE2:Hg19::chr6:168095835..168095838,-#_f363284ca4f003686a89986e6532b61ap@chr6:168095835..168095838, -
9.37e-99FFCP PHASE2:Hg19::chr11:1249994..1249999,+#_f363284ca4f003686a89986e6532b61ap30@MUC5B
9.37e-99FFCP PHASE1:Hg19::chr19:14662395..14662414,+#_f363284ca4f003686a89986e6532b61ap@chr19:14662395..14662414, +
9.37e-99FFCP PHASE1:Hg19::chr11:1263622..1263627,+#_f363284ca4f003686a89986e6532b61ap@chr11:1263622..1263627, +
9.37e-99FFCP PHASE2:Hg19::chr20:31611186..31611191,+#_f363284ca4f003686a89986e6532b61ap10@BPIFB6
2.55e-98FFCP PHASE2:Hg19::chr11:1260725..1260734,+#_d6f18d0476650f94a4565cbe7fd75824p@chr11:1260725..1260734, +
2.55e-98FFCP PHASE1:Hg19::chr16:70602961..70602972,+#_d6f18d0476650f94a4565cbe7fd75824p@chr16:70602961..70602972, +
2.55e-98FFCP PHASE1:Hg19::chr20:36694529..36694537,+#_d6f18d0476650f94a4565cbe7fd75824p30@RPRD1B
2.55e-98FFCP PHASE1:Hg19::chr12:52478564..52478569,+#_d6f18d0476650f94a4565cbe7fd75824p@chr12:52478564..52478569, +
2.55e-98FFCP PHASE1:Hg19::chr10:135337234..135337244,-#_d6f18d0476650f94a4565cbe7fd75824p@chr10:135337234..135337244, -
2.55e-98FFCP PHASE1:Hg19::chr4:8437851..8437881,+#_d6f18d0476650f94a4565cbe7fd75824p6@METTL19
2.55e-98FFCP PHASE1:Hg19::chr11:1263382..1263385,+#_d6f18d0476650f94a4565cbe7fd75824p@chr11:1263382..1263385, +
2.55e-98FFCP PHASE2:Hg19::chr4:8437851..8437881,+#_d6f18d0476650f94a4565cbe7fd75824p6@METTL19
2.55e-98FFCP PHASE2:Hg19::chr10:135337234..135337244,-#_d6f18d0476650f94a4565cbe7fd75824p@chr10:135337234..135337244, -
2.55e-98FFCP PHASE2:Hg19::chr16:70602961..70602972,+#_d6f18d0476650f94a4565cbe7fd75824p@chr16:70602961..70602972, +
2.55e-98FFCP PHASE2:Hg19::chr12:52478564..52478569,+#_d6f18d0476650f94a4565cbe7fd75824p@chr12:52478564..52478569, +
2.55e-98FFCP PHASE2:Hg19::chr11:1263382..1263385,+#_d6f18d0476650f94a4565cbe7fd75824p@chr11:1263382..1263385, +
2.55e-98FFCP PHASE1:Hg19::chr11:1260725..1260734,+#_d6f18d0476650f94a4565cbe7fd75824p@chr11:1260725..1260734, +
2.55e-98FFCP PHASE2:Hg19::chr20:36694529..36694537,+#_d6f18d0476650f94a4565cbe7fd75824p30@RPRD1B
1.87e-86FFCP PHASE1:Mm9::chr8:23117055..23117056,-#_ee613dbff46de927c7350e66aca0bbbfp@chr8:23117055..23117056, -
1.87e-86FFCP PHASE1:Mm9::chr19:31038353..31038362,+#_ee613dbff46de927c7350e66aca0bbbfp@chr19:31038353..31038362, +
1.87e-86FFCP PHASE2:Mm9::chr2:14201203..14201212,+#_ee613dbff46de927c7350e66aca0bbbfp@chr2:14201203..14201212, +
1.87e-86FFCP PHASE2:Mm9::chr8:23117055..23117056,-#_ee613dbff46de927c7350e66aca0bbbfp@chr8:23117055..23117056, -
1.87e-86FFCP PHASE2:Mm9::chr19:38060099..38060102,+#_ee613dbff46de927c7350e66aca0bbbfp@chr19:38060099..38060102, +
1.87e-86FFCP PHASE1:Mm9::chr12:116051009..116051016,-#_ee613dbff46de927c7350e66aca0bbbfp@chr12:116051009..116051016, -
1.87e-86FFCP PHASE1:Mm9::chr2:63059909..63059910,+#_ee613dbff46de927c7350e66aca0bbbfp@chr2:63059909..63059910, +
1.87e-86FFCP PHASE2:Mm9::chr12:116051009..116051016,-#_ee613dbff46de927c7350e66aca0bbbfp@chr12:116051009..116051016, -
1.87e-86FFCP PHASE1:Mm9::chr6:69701328..69701342,-#_ee613dbff46de927c7350e66aca0bbbfp1@ENSMUST00000114212
1.87e-86FFCP PHASE1:Mm9::chr12:115974938..115974945,-#_ee613dbff46de927c7350e66aca0bbbfp@chr12:115974938..115974945, -
1.87e-86FFCP PHASE1:Mm9::chr2:14201203..14201212,+#_ee613dbff46de927c7350e66aca0bbbfp@chr2:14201203..14201212, +
1.87e-86FFCP PHASE1:Mm9::chr9:69086930..69086933,+#_ee613dbff46de927c7350e66aca0bbbfp@chr9:69086930..69086933, +
1.87e-86FFCP PHASE2:Mm9::chr12:115974938..115974945,-#_ee613dbff46de927c7350e66aca0bbbfp@chr12:115974938..115974945, -
1.87e-86FFCP PHASE1:Mm9::chr6:69785263..69785268,-#_ee613dbff46de927c7350e66aca0bbbfp@chr6:69785263..69785268, -
1.87e-86FFCP PHASE1:Mm9::chr19:38060099..38060102,+#_ee613dbff46de927c7350e66aca0bbbfp@chr19:38060099..38060102, +
1.87e-86FFCP PHASE2:Mm9::chr19:31038353..31038362,+#_ee613dbff46de927c7350e66aca0bbbfp@chr19:31038353..31038362, +
1.87e-86FFCP PHASE1:Mm9::chr12:115979100..115979103,-#_ee613dbff46de927c7350e66aca0bbbfp@chr12:115979100..115979103, -
1.87e-86FFCP PHASE2:Mm9::chr12:115979100..115979103,-#_ee613dbff46de927c7350e66aca0bbbfp@chr12:115979100..115979103, -
1.87e-86FFCP PHASE2:Mm9::chr17:59564142..59564144,+#_ee613dbff46de927c7350e66aca0bbbfp@chr17:59564142..59564144, +
1.87e-86FFCP PHASE2:Mm9::chr6:69701328..69701342,-#_ee613dbff46de927c7350e66aca0bbbfp1@ENSMUST00000114212
1.87e-86FFCP PHASE2:Mm9::chr2:63059909..63059910,+#_ee613dbff46de927c7350e66aca0bbbfp@chr2:63059909..63059910, +
1.87e-86FFCP PHASE2:Mm9::chr9:69086930..69086933,+#_ee613dbff46de927c7350e66aca0bbbfp@chr9:69086930..69086933, +
1.87e-86FFCP PHASE2:Mm9::chr6:69785263..69785268,-#_ee613dbff46de927c7350e66aca0bbbfp@chr6:69785263..69785268, -
1.87e-86FFCP PHASE1:Mm9::chr17:59564142..59564144,+#_ee613dbff46de927c7350e66aca0bbbfp@chr17:59564142..59564144, +
1.23e-66FFCP PHASE1:Hg19::chr12:52478546..52478552,+#_6e29dbda06d056f1b8a4b0c49b6aa1f1p@chr12:52478546..52478552, +
1.23e-66FFCP PHASE2:Hg19::chr1:157567826..157567835,-#_6e29dbda06d056f1b8a4b0c49b6aa1f1p2@FCRL4
1.23e-66FFCP PHASE2:Hg19::chr12:52478546..52478552,+#_6e29dbda06d056f1b8a4b0c49b6aa1f1p@chr12:52478546..52478552, +
1.23e-66FFCP PHASE1:Hg19::chr1:157567826..157567835,-#_6e29dbda06d056f1b8a4b0c49b6aa1f1p2@FCRL4
2.39e-66FFCP PHASE1:Hg19::chr13:107026326..107026335,-#_897b359620fd78a4029d1f5d3ea7a577p@chr13:107026326..107026335, -
2.39e-66FFCP PHASE2:Hg19::chr19:36640447..36640459,+#_897b359620fd78a4029d1f5d3ea7a577p@chr19:36640447..36640459, +
2.39e-66FFCP PHASE1:Hg19::chr20:62321640..62321645,+#_897b359620fd78a4029d1f5d3ea7a577p1@BC131817
2.39e-66FFCP PHASE1:Hg19::chr11:1265985..1265990,+#_897b359620fd78a4029d1f5d3ea7a577p@chr11:1265985..1265990, +
2.39e-66FFCP PHASE1:Hg19::chr20:31612754..31612763,+#_897b359620fd78a4029d1f5d3ea7a577p@chr20:31612754..31612763, +
2.39e-66FFCP PHASE2:Hg19::chr11:1265985..1265990,+#_897b359620fd78a4029d1f5d3ea7a577p@chr11:1265985..1265990, +
2.39e-66FFCP PHASE1:Hg19::chr19:36640447..36640459,+#_897b359620fd78a4029d1f5d3ea7a577p@chr19:36640447..36640459, +
2.39e-66FFCP PHASE2:Hg19::chr14:103560509..103560517,+#_897b359620fd78a4029d1f5d3ea7a577p@chr14:103560509..103560517, +
2.39e-66FFCP PHASE2:Hg19::chr20:62321640..62321645,+#_897b359620fd78a4029d1f5d3ea7a577p1@BC131817
2.39e-66FFCP PHASE2:Hg19::chr13:107026326..107026335,-#_897b359620fd78a4029d1f5d3ea7a577p@chr13:107026326..107026335, -
2.39e-66FFCP PHASE2:Hg19::chr20:31612754..31612763,+#_897b359620fd78a4029d1f5d3ea7a577p@chr20:31612754..31612763, +
2.39e-66FFCP PHASE1:Hg19::chr14:103560509..103560517,+#_897b359620fd78a4029d1f5d3ea7a577p@chr14:103560509..103560517, +
4.66e-66FFCP PHASE1:Hg19::chr16:69418649..69418659,-#_9f67c72851bfaa15d213f23f32b39291p@chr16:69418649..69418659, -
4.66e-66FFCP PHASE1:Hg19::chr19:51530837..51530842,-#_9f67c72851bfaa15d213f23f32b39291p10@KLK11
4.66e-66FFCP PHASE1:Hg19::chr6:30954084..30954093,-#_9f67c72851bfaa15d213f23f32b39291p@chr6:30954084..30954093, -
4.66e-66FFCP PHASE2:Hg19::chr1:152382640..152382645,+#_9f67c72851bfaa15d213f23f32b39291p@chr1:152382640..152382645, +
4.66e-66FFCP PHASE1:Hg19::chr11:1283367..1283377,+#_9f67c72851bfaa15d213f23f32b39291p@chr11:1283367..1283377, +
4.66e-66FFCP PHASE2:Hg19::chr18:29006845..29006854,-#_9f67c72851bfaa15d213f23f32b39291p@chr18:29006845..29006854, -
4.66e-66FFCP PHASE1:Hg19::chr18:49921251..49921263,+#_9f67c72851bfaa15d213f23f32b39291p@chr18:49921251..49921263, +
4.66e-66FFCP PHASE2:Hg19::chr6:30954084..30954093,-#_9f67c72851bfaa15d213f23f32b39291p@chr6:30954084..30954093, -
4.66e-66FFCP PHASE1:Hg19::chr3:124535316..124535340,+#_9f67c72851bfaa15d213f23f32b39291p@chr3:124535316..124535340, +
4.66e-66FFCP PHASE1:Hg19::chr12:53673418..53673427,+#_9f67c72851bfaa15d213f23f32b39291p9@ESPL1
4.66e-66FFCP PHASE2:Hg19::chr11:1283367..1283377,+#_9f67c72851bfaa15d213f23f32b39291p@chr11:1283367..1283377, +
4.66e-66FFCP PHASE1:Hg19::chr3:187957646..187957656,+#_9f67c72851bfaa15d213f23f32b39291p43@LPP
4.66e-66FFCP PHASE2:Hg19::chr19:51530837..51530842,-#_9f67c72851bfaa15d213f23f32b39291p10@KLK11
4.66e-66FFCP PHASE2:Hg19::chr3:124535316..124535340,+#_9f67c72851bfaa15d213f23f32b39291p@chr3:124535316..124535340, +
4.66e-66FFCP PHASE2:Hg19::chr16:69418649..69418659,-#_9f67c72851bfaa15d213f23f32b39291p@chr16:69418649..69418659, -
4.66e-66FFCP PHASE1:Hg19::chr18:29006845..29006854,-#_9f67c72851bfaa15d213f23f32b39291p@chr18:29006845..29006854, -
4.66e-66FFCP PHASE1:Hg19::chr3:187957664..187957675,+#_9f67c72851bfaa15d213f23f32b39291p58@LPP
4.66e-66FFCP PHASE2:Hg19::chr3:187957646..187957656,+#_9f67c72851bfaa15d213f23f32b39291p43@LPP

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