UBERON:0001893

Name:	telencephalon
Namespace:	FANTOM
Definition:	"Organ component of neuraxis that has as its parts the cerebral cortex, cerebral white matter, basal ganglia, septum and fornix, as well as subcortical gray and white matter structures[FMA]." [FMA:62000, Wikipedia:Telencephalon]
Xrefs:	links: AAO:0010479 ABA:CH BM:Tel BTO:0000239 EFO:0000912 EHDAA2:0001982 EMAPA:16652 EMAPA:16910 EV:0100165 FMA:62000 GAID:621 MA:0000183 MAT:0000421 MESH:A.08.186.211.730.885 MIAA:0000421 NIF_GrossAnatomy:birnlex_1115 SCTID:263353005 TAO:0000079 VHOG:0000283 XAO:0000012 ZFA:0000079
Synonyms:	"cerebrum" EXACT [1] "endbrain" EXACT [Swanson:2004]
Comments:	The telencephalon is the name for a large region within the brain that is attributed many functions. Many people refer to it as the cerebrum; however, it is technically referred to as the telencephalon. As a more technical definition, the telencephalon refers to the cerebral hemispheres and other, smaller structures within the brain, although the telencephalon is one of the larger divisions (in terms of number). It is the anterior-most embryological division of the brain that develops from the prosencephalon. The telencephalon is composed of the following sub-regions; Limbic system; Cerebral cortex or cortices of the cerebral hemispheres, Basal ganglia, Olfactory bulb. The telencephalon comprises what most people think of as the 'brain' It lies on top of the brainstem and is the largest and most well-developed of the five major divisions of the brain. The telencephalon is the newest structure in the phylogenetic sense, with mammals having the largest and most well-developed among all species. It emerges from the prosencephalon, the first of three vesicles that form from the embryonic neural tube (Christine Fennema-Notestine, NIF_GrossAnatomy:birnlex_1115).
Alt_id:	UBERON:FMA_6200-FMA_62000-MA_0000183-MIAA_0000421-XAO_0000012-ZFA_0000079
Subset:	uberon_slim vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

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Parents

is_a:	UBERON:0002780(regional part of forebrain),UBERON:0010314(structure with developmental contribution from neural crest)
part_of:	UBERON:0001890(forebrain)

Children

derives from:

FF:0010188 (human cerebral meninges - adult sample)

part of:

UBERON:0000203 (pallium),UBERON:0000204 (ventral part of telencephalon),UBERON:0001869 (cerebral hemisphere),UBERON:0002285 (telencephalic ventricle),UBERON:0002791 (regional part of telencephalon),UBERON:0005340 (dorsal telencephalic commissure),UBERON:0005366 (olfactory lobe),UBERON:0009663 (telencephalic nucleus),UBERON:0010011 (collection of basal ganglia),UBERON:0011299 (white matter of telencephalon),UBERON:0011300 (gray matter of telencephalon)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

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Human (Homo sapiens)

• 10031-101E4 (temporal lobe, adult, pool1)
• 10032-101E5 (postcentral gyrus, adult, pool1)
• 10034-101E7 (parietal lobe, adult, pool1)
• 10035-101E8 (paracentral gyrus, adult, pool1)
• 10036-101E9 (occipital pole, adult, pool1)
• 10037-101F1 (nucleus accumbens, adult, pool1)
• 10039-101F3 (insula, adult, pool1)
• 10040-101F4 (frontal lobe, adult, pool1)
• 10042-101F6 (corpus callosum, adult, pool1)
• 10071-101I8 (duodenum, fetal, donor1)

... further results Mouse (Mus musculus)

• 10031-101E4 (temporal lobe, adult, pool1)
• 10032-101E5 (postcentral gyrus, adult, pool1)
• 10034-101E7 (parietal lobe, adult, pool1)
• 10035-101E8 (paracentral gyrus, adult, pool1)
• 10036-101E9 (occipital pole, adult, pool1)
• 10037-101F1 (nucleus accumbens, adult, pool1)
• 10039-101F3 (insula, adult, pool1)
• 10040-101F4 (frontal lobe, adult, pool1)
• 10042-101F6 (corpus callosum, adult, pool1)
• 10071-101I8 (duodenum, fetal, donor1)

... further results

Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001893 (telencephalon), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

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P-value	FFCP	Short description
1.43e-124	FFCP PHASE2:Hg19::chr6:108487289..108487302,+#_1c80b2674fe8e1b0af63293530890466	p1@NR2E1
1.43e-124	FFCP PHASE1:Hg19::chr6:108487289..108487302,+#_1c80b2674fe8e1b0af63293530890466	p1@NR2E1
2.82e-123	FFCP PHASE2:Hg19::chr12:14133429..14133438,-#_dc7b1d87fd9434b0c9ab1c51d8bc6767	p3@GRIN2B
2.82e-123	FFCP PHASE1:Hg19::chr12:14133429..14133438,-#_dc7b1d87fd9434b0c9ab1c51d8bc6767	p3@GRIN2B
4.44e-122	FFCP PHASE2:Hg19::chr19:35633957..35633969,+#_8d62ebd338aa6cc5f97acf5b01e2590c	p2@FXYD7
4.44e-122	FFCP PHASE1:Hg19::chr19:35633957..35633969,+#_8d62ebd338aa6cc5f97acf5b01e2590c	p2@FXYD7
1.26e-120	FFCP PHASE1:Hg19::chr11:49582389..49582417,+#_4486972765abe8271846731914530307	p1@ENST00000527477, p1@ENST00000530858
1.26e-120	FFCP PHASE2:Hg19::chr11:49582389..49582417,+#_4486972765abe8271846731914530307	p1@ENST00000527477, p1@ENST00000530858
3.1e-119	FFCP PHASE2:Hg19::chr5:80255907..80255942,+#_9b2d77478fc76612524fd9a362c8da16	p@chr5:80255907..80255942, +
3.1e-119	FFCP PHASE1:Hg19::chr5:80255907..80255942,+#_9b2d77478fc76612524fd9a362c8da16	p@chr5:80255907..80255942, +
3.9e-119	FFCP PHASE2:Hg19::chr11:133402410..133402434,-#_0a0f0e75e4625a34e4c4f3fa3bea03c2	p5@OPCML
3.9e-119	FFCP PHASE1:Hg19::chr11:133402410..133402434,-#_0a0f0e75e4625a34e4c4f3fa3bea03c2	p5@OPCML
1.71e-118	FFCP PHASE2:Hg19::chr12:99548462..99548482,-#_5dc051da9caa30d7390aa6720268cfde	p9@ANKS1B
1.71e-118	FFCP PHASE1:Hg19::chr12:99548462..99548482,-#_5dc051da9caa30d7390aa6720268cfde	p9@ANKS1B
2.04e-118	FFCP PHASE1:Hg19::chr9:112629512..112629528,+#_00c677aaeb6043832afbc8283b0193e9	p7@PALM2
2.04e-118	FFCP PHASE2:Hg19::chr9:112629512..112629528,+#_00c677aaeb6043832afbc8283b0193e9	p7@PALM2
2.49e-118	FFCP PHASE2:Hg19::chr12:11652664..11652681,+#_02eb10efde4d653fe69caff7234b8c2b	p@chr12:11652664..11652681, +
2.49e-118	FFCP PHASE1:Hg19::chr12:11652664..11652681,+#_02eb10efde4d653fe69caff7234b8c2b	p@chr12:11652664..11652681, +
6.26e-118	FFCP PHASE2:Hg19::chr4:6474472..6474528,-#_ae2ed6fae439a1fdb0d7be24caee9df1	p6@PPP2R2C
6.26e-118	FFCP PHASE1:Hg19::chr4:6474472..6474528,-#_ae2ed6fae439a1fdb0d7be24caee9df1	p6@PPP2R2C
6.42e-118	FFCP PHASE2:Hg19::chr19:54462560..54462571,+#_2203fd0c08eba9522915aa1758fb5661	p@chr19:54462560..54462571, +
6.42e-118	FFCP PHASE1:Hg19::chr19:54462560..54462571,+#_2203fd0c08eba9522915aa1758fb5661	p@chr19:54462560..54462571, +
9.8e-118	FFCP PHASE2:Hg19::chr5:27038708..27038730,-#_9cd765495af6ebbe943e6bf118d6439b	p2@CDH9
9.8e-118	FFCP PHASE1:Hg19::chr5:27038708..27038730,-#_9cd765495af6ebbe943e6bf118d6439b	p2@CDH9
1.18e-117	FFCP PHASE2:Hg19::chr11:89867681..89867695,+#_97b9aa36754160ef50bca242dca6f272	p2@NAALAD2
1.18e-117	FFCP PHASE1:Hg19::chr11:89867681..89867695,+#_97b9aa36754160ef50bca242dca6f272	p2@NAALAD2
1.48e-117	FFCP PHASE1:Hg19::chr4:46392290..46392324,-#_8222f9dc8482139b36859e26a9aeacc5	p13@GABRA2
1.48e-117	FFCP PHASE2:Hg19::chr4:46392290..46392324,-#_8222f9dc8482139b36859e26a9aeacc5	p13@GABRA2
3.76e-117	FFCP PHASE2:Hg19::chr9:112629781..112629806,+#_81b063e9af0bd0473dbff7d3e641ae55	p14@PALM2-AKAP2
3.76e-117	FFCP PHASE1:Hg19::chr9:112629781..112629806,+#_81b063e9af0bd0473dbff7d3e641ae55	p14@PALM2-AKAP2
5.36e-117	FFCP PHASE1:Hg19::chr11:132982177..132982181,-#_2f2b843ba19bc2bedcc2dd78aa29f906	p@chr11:132982177..132982181, -
5.36e-117	FFCP PHASE2:Hg19::chr11:132982177..132982181,-#_2f2b843ba19bc2bedcc2dd78aa29f906	p@chr11:132982177..132982181, -
7.89e-117	FFCP PHASE2:Hg19::chr2:196990526..196990535,-#_bd9dd36808b26771d9f84aa4e0b8d32b	p@chr2:196990526..196990535, -
7.89e-117	FFCP PHASE1:Hg19::chr2:196990526..196990535,-#_bd9dd36808b26771d9f84aa4e0b8d32b	p@chr2:196990526..196990535, -
1.3e-116	FFCP PHASE2:Hg19::chr20:1975298..1975316,-#_b9f88916b48ba5103f971340d5c65ff9	p2@PDYN
1.3e-116	FFCP PHASE1:Hg19::chr20:1975298..1975316,-#_b9f88916b48ba5103f971340d5c65ff9	p2@PDYN
1.91e-116	FFCP PHASE1:Hg19::chr10:10504498..10504520,+#_2a4b3c20d25803c72619906a7bbefa67	p@chr10:10504498..10504520, +
1.91e-116	FFCP PHASE2:Hg19::chr10:10504498..10504520,+#_2a4b3c20d25803c72619906a7bbefa67	p@chr10:10504498..10504520, +
2.49e-116	FFCP PHASE1:Hg19::chr6:155538093..155538109,+#_b996f954e175ca534f9250e0af2ae218	p2@TIAM2
2.49e-116	FFCP PHASE2:Hg19::chr6:155538093..155538109,+#_b996f954e175ca534f9250e0af2ae218	p2@TIAM2
2.66e-116	FFCP PHASE1:Hg19::chr12:14133820..14133830,-#_e0a0b01e7d586595223dfd6abff73483	p@chr12:14133820..14133830, -
2.66e-116	FFCP PHASE2:Hg19::chr12:14133820..14133830,-#_e0a0b01e7d586595223dfd6abff73483	p@chr12:14133820..14133830, -
3.15e-116	FFCP PHASE1:Hg19::chr1:70033108..70033121,+#_c01744910b097c57741ac565836f9ca8	p8@LRRC7
3.15e-116	FFCP PHASE2:Hg19::chr1:70033108..70033121,+#_c01744910b097c57741ac565836f9ca8	p8@LRRC7
1.71e-115	FFCP PHASE2:Hg19::chr12:49931764..49931791,+#_46cc8eb3c174c66c2a851853fb978d7e	p@chr12:49931764..49931791, +
1.71e-115	FFCP PHASE1:Hg19::chr12:49931764..49931791,+#_46cc8eb3c174c66c2a851853fb978d7e	p@chr12:49931764..49931791, +
2.18e-115	FFCP PHASE1:Hg19::chr4:46995726..46995765,+#_b7e3bd53366aed1d2e9a241b7bdf193a	p5@GABRB1
2.18e-115	FFCP PHASE2:Hg19::chr4:46995726..46995765,+#_b7e3bd53366aed1d2e9a241b7bdf193a	p5@GABRB1
3.83e-115	FFCP PHASE2:Hg19::chr19:54462732..54462743,+#_630c47b82084f5860742ff80cafcfe06	p@chr19:54462732..54462743, +
3.83e-115	FFCP PHASE1:Hg19::chr19:54462732..54462743,+#_630c47b82084f5860742ff80cafcfe06	p@chr19:54462732..54462743, +
7.57e-115	FFCP PHASE1:Hg19::chr12:99548410..99548419,-#_54625c859d72111a8bae1223259e5e20	p15@ANKS1B
7.57e-115	FFCP PHASE2:Hg19::chr12:99548410..99548419,-#_54625c859d72111a8bae1223259e5e20	p15@ANKS1B
1.5e-114	FFCP PHASE1:Hg19::chr16:30418387..30418422,+#_71da97be7d0101701ff58b505d56d2bd	p4@ZNF771
1.5e-114	FFCP PHASE2:Hg19::chr16:30418387..30418422,+#_71da97be7d0101701ff58b505d56d2bd	p4@ZNF771
1.56e-114	FFCP PHASE2:Hg19::chr4:6514469..6514483,-#_528d78ac70fe9188196e908a5d3cf6a2	p@chr4:6514469..6514483, -
1.56e-114	FFCP PHASE1:Hg19::chr4:6514469..6514483,-#_528d78ac70fe9188196e908a5d3cf6a2	p@chr4:6514469..6514483, -
1.64e-114	FFCP PHASE1:Hg19::chr10:10504464..10504475,+#_ff15c58adeee6ce0f844bef94c041e46	p@chr10:10504464..10504475, +
1.64e-114	FFCP PHASE2:Hg19::chr10:10504464..10504475,+#_ff15c58adeee6ce0f844bef94c041e46	p@chr10:10504464..10504475, +
1.79e-114	FFCP PHASE1:Hg19::chr6:12717801..12717817,+#_685f1ee09b19f3ba540fa896dcc582d6	p8@PHACTR1
1.79e-114	FFCP PHASE2:Hg19::chr6:12717801..12717817,+#_685f1ee09b19f3ba540fa896dcc582d6	p8@PHACTR1
2.01e-114	FFCP PHASE1:Hg19::chr6:12717031..12717057,+#_dfe170c713a95ca21e81da276d77b799	p5@PHACTR1
2.01e-114	FFCP PHASE2:Hg19::chr6:12717031..12717057,+#_dfe170c713a95ca21e81da276d77b799	p5@PHACTR1
2.32e-114	FFCP PHASE1:Hg19::chr17:9929636..9929643,-#_bfe82d6cd03260cd77b39a51899525c9	p24@GAS7
2.32e-114	FFCP PHASE2:Hg19::chr17:9929636..9929643,-#_bfe82d6cd03260cd77b39a51899525c9	p24@GAS7
6.31e-114	FFCP PHASE2:Hg19::chr3:123813592..123813615,+#_d821e05b9c319d445ca291231e11f5cd	p9@KALRN
6.31e-114	FFCP PHASE1:Hg19::chr3:123813592..123813615,+#_d821e05b9c319d445ca291231e11f5cd	p9@KALRN
1.15e-113	FFCP PHASE2:Hg19::chr10:11047712..11047726,+#_c894023aae3c8ef189e531c2b4b9d2a2	p@chr10:11047712..11047726, +
1.15e-113	FFCP PHASE1:Hg19::chr10:11047712..11047726,+#_c894023aae3c8ef189e531c2b4b9d2a2	p@chr10:11047712..11047726, +
2.01e-113	FFCP PHASE2:Hg19::chr20:1975321..1975338,-#_b730d783601ed70aa35a568917f5a642	p3@PDYN
2.01e-113	FFCP PHASE1:Hg19::chr20:1975321..1975338,-#_b730d783601ed70aa35a568917f5a642	p3@PDYN
2.02e-113	FFCP PHASE1:Hg19::chr5:160975135..160975218,-#_942224cbdca6236532bc9d5e7e90c1c7	p3@GABRB2
2.02e-113	FFCP PHASE2:Hg19::chr5:160975135..160975218,-#_942224cbdca6236532bc9d5e7e90c1c7	p3@GABRB2
2.1e-113	FFCP PHASE2:Hg19::chr16:14280496..14280512,+#_687006378c8268388689fddead01aecb	p9@MKL2
2.1e-113	FFCP PHASE1:Hg19::chr16:14280496..14280512,+#_687006378c8268388689fddead01aecb	p9@MKL2
2.2e-113	FFCP PHASE2:Hg19::chr1:70035053..70035078,+#_801553800d88564ceb576cd346ff32a2	p@chr1:70035053..70035078, +
2.2e-113	FFCP PHASE1:Hg19::chr1:70035053..70035078,+#_801553800d88564ceb576cd346ff32a2	p@chr1:70035053..70035078, +
2.27e-113	FFCP PHASE1:Hg19::chr6:12716992..12717005,+#_40d7d40035ebbe04f429bf85ff3db243	p3@PHACTR1
2.27e-113	FFCP PHASE2:Hg19::chr6:12716992..12717005,+#_40d7d40035ebbe04f429bf85ff3db243	p3@PHACTR1
3.67e-113	FFCP PHASE1:Hg19::chr12:45315625..45315636,-#_991443a82f7ed4eb450801ac62048093	p7@NELL2
3.67e-113	FFCP PHASE2:Hg19::chr12:45315625..45315636,-#_991443a82f7ed4eb450801ac62048093	p7@NELL2
4.2e-113	FFCP PHASE1:Hg19::chr11:133402367..133402378,-#_172129683f652079a1f0673a7bd2eb8f	p8@OPCML
4.2e-113	FFCP PHASE2:Hg19::chr11:133402367..133402378,-#_172129683f652079a1f0673a7bd2eb8f	p8@OPCML
5.3e-113	FFCP PHASE1:Hg19::chr2:173600214..173600253,+#_a914c533a47fce9383820be53539611a	p7@RAPGEF4
5.3e-113	FFCP PHASE2:Hg19::chr2:173600214..173600253,+#_a914c533a47fce9383820be53539611a	p7@RAPGEF4
9.91e-113	FFCP PHASE1:Hg19::chr12:14134636..14134651,-#_b942802e76545d9c870ca58a0ce01ecc	p@chr12:14134636..14134651, -
9.91e-113	FFCP PHASE2:Hg19::chr12:14134636..14134651,-#_b942802e76545d9c870ca58a0ce01ecc	p@chr12:14134636..14134651, -
1.16e-112	FFCP PHASE1:Hg19::chr15:30231269..30231299,-#_6a281f414a291e1aa9b83bfd3aa43348	p@chr15:30231269..30231299, -
1.16e-112	FFCP PHASE2:Hg19::chr15:30231269..30231299,-#_6a281f414a291e1aa9b83bfd3aa43348	p@chr15:30231269..30231299, -
2.02e-112	FFCP PHASE1:Hg19::chr4:6474536..6474563,-#_5b1ae4d8024b30b3165274cc57b65f3a	p9@PPP2R2C
2.02e-112	FFCP PHASE1:Hg19::chr16:14280513..14280524,+#_5b1ae4d8024b30b3165274cc57b65f3a	p5@MKL2
2.02e-112	FFCP PHASE2:Hg19::chr16:14280513..14280524,+#_5b1ae4d8024b30b3165274cc57b65f3a	p5@MKL2
2.02e-112	FFCP PHASE2:Hg19::chr4:6474536..6474563,-#_5b1ae4d8024b30b3165274cc57b65f3a	p9@PPP2R2C
2.06e-112	FFCP PHASE2:Hg19::chr8:89554929..89554960,+#_65d3f331cf464428108f45f55c849798	p1@ENST00000518631
2.06e-112	FFCP PHASE1:Hg19::chr8:89554929..89554960,+#_65d3f331cf464428108f45f55c849798	p1@ENST00000518631
2.2e-112	FFCP PHASE1:Hg19::chr1:35391417..35391476,-#_b9e48887e6273057f015a3baa292f34b	p2@DLGAP3
2.2e-112	FFCP PHASE2:Hg19::chr1:35391417..35391476,-#_b9e48887e6273057f015a3baa292f34b	p2@DLGAP3
5.59e-112	FFCP PHASE2:Hg19::chr7:111424462..111424496,-#_66423ba68b59072c6741a2496339c727	p3@DOCK4
5.59e-112	FFCP PHASE1:Hg19::chr7:111424462..111424496,-#_66423ba68b59072c6741a2496339c727	p3@DOCK4
6.0e-112	FFCP PHASE1:Hg19::chr19:49016319..49016405,-#_535a3137e805da77370323492c5fd85c	p2@LMTK3
6.0e-112	FFCP PHASE2:Hg19::chr19:49016319..49016405,-#_535a3137e805da77370323492c5fd85c	p2@LMTK3

Property "Property value" (as page type) with input value "UBPROP:0000001 "Part of the forebrain consisting of paired olfactory bulbs and cerebral hemispheres.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "The anterior and dorsal forebrain neuromere, includes the olfactory bulb. Kimmel et al, 1995.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000002 "relationship loss: develops_from presumptive telencephalon (TAO:0000571)[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.