UBERON:0001846: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id=UBERON:FMA_60909-MA_0000237-MIAA_0000145-XAO_0000192-ZFA_0000217 | ||
|comment=This class was created automatically from a combination of ontologies | |comment=This class was created automatically from a combination of ontologies | ||
|created_by= | |created_by= | ||
| | |def="Complex labyrinthine structure that comprises sensory endorgans specialized for vestibular, auditory, and acoustico-vestibular sensation." [PMID:16217737, Wikipedia:Internal_ear, ZFIN:curator] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from=UBERON:0003051 | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0001846 | |||
|is_a=UBERON:0000477 ;;UBERON:0004121 ;;UBERON:0010314 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|part_of= | |name=internal ear | ||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0001690 | |||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "The auditory (hearing) and vestibular (balance) organ of the fish, equivalent to the inner ear of amniotes. (See Anatomical Atlas entry for ear by T. Whitfield.)[TAO]" xsd:string | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "The auditory (hearing) and vestibular (balance) organ of the fish, equivalent to the inner ear of amniotes. (See Anatomical Atlas entry for ear by T. Whitfield.)[TAO]" xsd:string | ||
| | |subset=uberon_slim;;vertebrate_core | ||
| | |synonym="auris interna" RELATED [BTO:0000630];;"inner ear" EXACT [];;"labyrinth" RELATED [];;"otocyst" RELATED [] | ||
|union_of= | |||
|xref=AAO:0000238;;BTO:0000630;;EFO:0001363;;EHDAA2:0000831;;EHDAA:504;;EMAPA:16194;;EV:0100361;;FMA:60909;;GAID:871;;galen:InnerEar;;http://upload.wikimedia.org/wikipedia/commons/thumb/1/19/Gray923.png/200px-Gray923.png;;MA:0000237;;MAT:0000145;;MESH:A.09.246.631;;MIAA:0000145;;ncithesaurus:Internal_Ear;;NIF_GrossAnatomy:birnlex_1196;;OpenCyc:Mx4rwJ8SsJwpEbGdrcN5Y29ycA;;SCTID:181189006;;TAO:0000217;;VHOG:0000284;;XAO:0000192;;ZFA:0000217 | |||
}} | }} | ||
Latest revision as of 17:21, 12 September 2014
| Name: | internal ear | |
|---|---|---|
| Namespace: | FANTOM | |
| Definition: | "Complex labyrinthine structure that comprises sensory endorgans specialized for vestibular, auditory, and acoustico-vestibular sensation." [PMID:16217737, Wikipedia:Internal_ear, ZFIN:curator] | |
| Xrefs: |
| |
| Synonyms: |
"auris interna" RELATED [BTO:0000630] "inner ear" EXACT [] "labyrinth" RELATED [] "otocyst" RELATED [] | |
| Comments: | This class was created automatically from a combination of ontologies | |
| Alt_id: | UBERON:FMA_60909-MA_0000237-MIAA_0000145-XAO_0000192-ZFA_0000217 | |
| Subset: |
uberon_slim vertebrate_core |
200px-Gray923.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000477(anatomical cluster),UBERON:0004121(ectoderm-derived structure),UBERON:0010314(structure with developmental contribution from neural crest) |
|---|---|
| develops_from: | UBERON:0003051(ear vesicle) |
| part_of: | UBERON:0001690(ear) |
Children
| derives from: | FF:0000256 (Inner ear stem cell (1st generation stem cell) sample),FF:0000257 (Inner ear stem cells (4th generation stem cells) sample),FF:0000258 (Inner ear stem cell (10 days differentiation) sample),FF:0000259 (Inner ear stem cell (3 days differentiation) sample) |
|---|---|
| part of: | FF:0000256 (Inner ear stem cell (1st generation stem cell) sample),FF:0000257 (Inner ear stem cells (4th generation stem cells) sample),FF:0000258 (Inner ear stem cell (10 days differentiation) sample),FF:0000259 (Inner ear stem cell (3 days differentiation) sample),UBERON:0001839 (bony labyrinth),UBERON:0001849 (membranous labyrinth),UBERON:0004637 (otic capsule),UBERON:0010113 (future membranous labyrinth),UBERON:0010349 (otic capsule pre-cartilage condensation),UBERON:0010351 (otic capsule cartilage condensation) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Mouse (Mus musculus)
- 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
- 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
- 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
- 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
- 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
- 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001846 (internal ear), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
Property "Property value" (as page type) with input value "UBPROP:0000001 "The auditory (hearing) and vestibular (balance) organ of the fish, equivalent to the inner ear of amniotes. (See Anatomical Atlas entry for ear by T. Whitfield.)[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
