UBERON:0001797: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 13: | Line 13: | ||
|located_in= | |located_in= | ||
|name=vitreous humor | |name=vitreous humor | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0001798 | |part_of=UBERON:0001798 | ||
Latest revision as of 17:20, 12 September 2014
| Name: | vitreous humor | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Body substance of semisolid state which constitutes the vitreous body of the eye.[FMA]" [FMA:FMA, Wikipedia:Vitreous_humour] | ||
| Xrefs: |
| ||
| Synonyms: |
"humor vitreous" EXACT [] "humor vitreus" EXACT [FMA:58822, FMA:TA] "humoral fluid" RELATED [BTO:0001451] "ocular fluid" RELATED [BTO:0001451] "portion of vitreous humor" BROAD [FMA:67388] "vitreous" EXACT [ZFA:0005561] "vitreous fluid" RELATED [BTO:0001451] "vitreous humour" RELATED [] "whole portion of vitreous humor" EXACT [FMA:58822] | ||
| Comments: | Note that FMA distinguishes between a portion and the whole portion. We equate with whole portion here, but this is arbitrary | ||
| Alt_id: | UBERON:FMA_58822-MA_0001286 | ||
| Subset: |
uberon_slim vertebrate_core |
200px-Schematic_diagram_of_the_human_eye_en.svg.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0006312(ocular refractive media) |
|---|---|
| part_of: | UBERON:0001798(vitreous body) |
Children
| derives from: | FF:0011157 (human eye - vitreous humor sample) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10268-104D7 (eye - vitreous humor, donor1)
- 10296-104G8
- 10324-105A9
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001797 (vitreous humor), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
No analysis results
