UBERON:0001737: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 13: | Line 13: | ||
|located_in= | |located_in= | ||
|name=larynx | |name=larynx | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0000065 | |part_of=UBERON:0000065 | ||
Latest revision as of 17:20, 12 September 2014
| Name: | larynx | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Heterogeneous cluster that connects the pharynx to the tracheobronchial tree[FMA]." [FMA:55097, Wikipedia:Larynx] | ||
| Xrefs: |
| ||
| Comments: | This class was created automatically from a combination of ontologies | ||
| Alt_id: | UBERON:FMA_55097-MA_0000414-MIAA_0000187-XAO_0003081 | ||
| Subset: | uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000477(anatomical cluster),UBERON:0004119(endoderm-derived structure) |
|---|---|
| develops_from: | UBERON:0008947(respiratory primordium) |
| part_of: | UBERON:0000065(respiratory tract) |
Children
| derives from: | FF:0104978 (HEp-2 cell sample) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 11890-125D9 (Hep-2 cells treated with Streptococci strain 5448, biol_rep1)
- 11891-125E1 (Hep-2 cells treated with Streptococci strain 5448, biol_rep2)
- 11892-125E2 (Hep-2 cells treated with Streptococci strain 5448, biol_rep3)
- 11893-125E3
- 11894-125E4 (Hep-2 cells treated with Streptococci strain JRS4, biol_rep1)
- 11895-125E5 (Hep-2 cells treated with Streptococci strain JRS4, biol_rep2)
- 11896-125E6 (Hep-2 cells treated with Streptococci strain JRS4, biol_rep3)
- 11897-125E7
- 11898-125E8 (Hep-2 cells mock treated, biol_rep1)
- 11899-125E9 (Hep-2 cells mock treated, biol_rep2)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001737 (larynx), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.26e-195 | FFCP PHASE1:Hg19::chr2:233246793..233246841,-#_5335a0e50c3d572fbef1349230bd2924 | p1@ENST00000441266 |
| 2.26e-195 | FFCP PHASE1:Hg19::chr2:233244473..233244503,+#_5335a0e50c3d572fbef1349230bd2924 | p1@AK297894 |
| 2.26e-195 | FFCP PHASE1:Hg19::chr17:79098633..79098647,-#_5335a0e50c3d572fbef1349230bd2924 | p@chr17:79098633..79098647, - |
| 2.26e-195 | FFCP PHASE1:Hg19::chr2:233244912..233244922,+#_5335a0e50c3d572fbef1349230bd2924 | p2@AK297894 |
| 2.26e-195 | FFCP PHASE2:Hg19::chr2:233246459..233246472,+#_5335a0e50c3d572fbef1349230bd2924 | p9@ALPP |
| 2.26e-195 | FFCP PHASE2:Hg19::chr17:79098633..79098647,-#_5335a0e50c3d572fbef1349230bd2924 | p@chr17:79098633..79098647, - |
| 2.26e-195 | FFCP PHASE1:Hg19::chr16:87869864..87869878,+#_5335a0e50c3d572fbef1349230bd2924 | p@chr16:87869864..87869878, + |
| 2.26e-195 | FFCP PHASE2:Hg19::chr2:233246793..233246841,-#_5335a0e50c3d572fbef1349230bd2924 | p1@ENST00000441266 |
| 2.26e-195 | FFCP PHASE1:Hg19::chr8:128241234..128241241,-#_5335a0e50c3d572fbef1349230bd2924 | p7@uc003ysb.2 |
| 2.26e-195 | FFCP PHASE2:Hg19::chr2:233244473..233244503,+#_5335a0e50c3d572fbef1349230bd2924 | p1@AK297894 |
| 2.26e-195 | FFCP PHASE2:Hg19::chr16:87869864..87869878,+#_5335a0e50c3d572fbef1349230bd2924 | p@chr16:87869864..87869878, + |
| 2.26e-195 | FFCP PHASE1:Hg19::chr2:233246932..233246943,+#_5335a0e50c3d572fbef1349230bd2924 | p6@ALPP |
| 2.26e-195 | FFCP PHASE2:Hg19::chr2:233244912..233244922,+#_5335a0e50c3d572fbef1349230bd2924 | p2@AK297894 |
| 2.26e-195 | FFCP PHASE2:Hg19::chr8:128241234..128241241,-#_5335a0e50c3d572fbef1349230bd2924 | p7@uc003ysb.2 |
| 2.26e-195 | FFCP PHASE2:Hg19::chr2:233246932..233246943,+#_5335a0e50c3d572fbef1349230bd2924 | p6@ALPP |
| 2.26e-195 | FFCP PHASE1:Hg19::chr2:233246459..233246472,+#_5335a0e50c3d572fbef1349230bd2924 | p9@ALPP |
| 2.87e-176 | FFCP PHASE1:Hg19::chr7:54879838..54879849,-#_d8c52cce026694d651219f5e28aacbde | p@chr7:54879838..54879849, - |
| 2.87e-176 | FFCP PHASE2:Hg19::chr8:128265552..128265583,-#_d8c52cce026694d651219f5e28aacbde | p@chr8:128265552..128265583, - |
| 2.87e-176 | FFCP PHASE1:Hg19::chr4:123838984..123838995,-#_d8c52cce026694d651219f5e28aacbde | p@chr4:123838984..123838995, - |
| 2.87e-176 | FFCP PHASE1:Hg19::chr4:134184041..134184064,-#_d8c52cce026694d651219f5e28aacbde | p2@ENST00000507172 |
| 2.87e-176 | FFCP PHASE2:Hg19::chr7:54879838..54879849,-#_d8c52cce026694d651219f5e28aacbde | p@chr7:54879838..54879849, - |
| 2.87e-176 | FFCP PHASE1:Hg19::chrX:86868675..86868686,+#_d8c52cce026694d651219f5e28aacbde | p@chrX:86868675..86868686, + |
| 2.87e-176 | FFCP PHASE2:Hg19::chr4:123838984..123838995,-#_d8c52cce026694d651219f5e28aacbde | p@chr4:123838984..123838995, - |
| 2.87e-176 | FFCP PHASE1:Hg19::chr2:233246656..233246666,+#_d8c52cce026694d651219f5e28aacbde | p8@ALPP |
| 2.87e-176 | FFCP PHASE2:Hg19::chr4:134184041..134184064,-#_d8c52cce026694d651219f5e28aacbde | p2@ENST00000507172 |
| 2.87e-176 | FFCP PHASE2:Hg19::chrX:86868675..86868686,+#_d8c52cce026694d651219f5e28aacbde | p@chrX:86868675..86868686, + |
| 2.87e-176 | FFCP PHASE1:Hg19::chr8:128265552..128265583,-#_d8c52cce026694d651219f5e28aacbde | p@chr8:128265552..128265583, - |
| 2.87e-176 | FFCP PHASE2:Hg19::chr2:233246656..233246666,+#_d8c52cce026694d651219f5e28aacbde | p8@ALPP |
| 3.52e-176 | FFCP PHASE2:Hg19::chr2:233246988..233246995,+#_e7bc3cd678b1d55b46699e6281f6a43d | p@chr2:233246988..233246995, + |
| 3.52e-176 | FFCP PHASE1:Hg19::chr2:233246988..233246995,+#_e7bc3cd678b1d55b46699e6281f6a43d | p@chr2:233246988..233246995, + |
| 1.77e-175 | FFCP PHASE1:Hg19::chr19:3603296..3603307,+#_5413ac4eef2171120a0338b7979f4080 | p@chr19:3603296..3603307, + |
| 1.77e-175 | FFCP PHASE1:Hg19::chr8:128269736..128269748,-#_5413ac4eef2171120a0338b7979f4080 | p@chr8:128269736..128269748, - |
| 1.77e-175 | FFCP PHASE2:Hg19::chr8:128270240..128270252,-#_5413ac4eef2171120a0338b7979f4080 | p@chr8:128270240..128270252, - |
| 1.77e-175 | FFCP PHASE1:Hg19::chr8:128270857..128270869,-#_5413ac4eef2171120a0338b7979f4080 | p@chr8:128270857..128270869, - |
| 1.77e-175 | FFCP PHASE2:Hg19::chr8:128269736..128269748,-#_5413ac4eef2171120a0338b7979f4080 | p@chr8:128269736..128269748, - |
| 1.77e-175 | FFCP PHASE2:Hg19::chr19:3603296..3603307,+#_5413ac4eef2171120a0338b7979f4080 | p@chr19:3603296..3603307, + |
| 1.77e-175 | FFCP PHASE2:Hg19::chr8:128270857..128270869,-#_5413ac4eef2171120a0338b7979f4080 | p@chr8:128270857..128270869, - |
| 1.77e-175 | FFCP PHASE1:Hg19::chr8:128270240..128270252,-#_5413ac4eef2171120a0338b7979f4080 | p@chr8:128270240..128270252, - |
| 9.96e-174 | FFCP PHASE1:Hg19::chr4:134183951..134183960,-#_69c8395b2cee5d642b2d4f014de09eec | p4@ENST00000507172 |
| 9.96e-174 | FFCP PHASE2:Hg19::chr4:134183951..134183960,-#_69c8395b2cee5d642b2d4f014de09eec | p4@ENST00000507172 |
| 1.23e-160 | FFCP PHASE2:Hg19::chr1:207262293..207262306,+#_ba2c638bddc166c41c26feccc8f33958 | p17@C4BPB |
| 1.23e-160 | FFCP PHASE1:Hg19::chr11:3147806..3147811,-#_ba2c638bddc166c41c26feccc8f33958 | p7@OSBPL5 |
| 1.23e-160 | FFCP PHASE1:Hg19::chr2:233243233..233243245,+#_ba2c638bddc166c41c26feccc8f33958 | p5@ALPP |
| 1.23e-160 | FFCP PHASE1:Hg19::chr1:207262293..207262306,+#_ba2c638bddc166c41c26feccc8f33958 | p17@C4BPB |
| 1.23e-160 | FFCP PHASE2:Hg19::chr2:233243233..233243245,+#_ba2c638bddc166c41c26feccc8f33958 | p5@ALPP |
| 1.23e-160 | FFCP PHASE2:Hg19::chr11:3147806..3147811,-#_ba2c638bddc166c41c26feccc8f33958 | p7@OSBPL5 |
| 2.57e-160 | FFCP PHASE2:Hg19::chr11:4154830..4154835,+#_5ccc6a455012eb4c8197320d6bb3dd56 | p@chr11:4154830..4154835, + |
| 2.57e-160 | FFCP PHASE1:Hg19::chr11:4154830..4154835,+#_5ccc6a455012eb4c8197320d6bb3dd56 | p@chr11:4154830..4154835, + |
| 4.46e-160 | FFCP PHASE1:Hg19::chr8:128433201..128433228,-#_443c1ec521d038baee20b34c8e4ba8ef | p1@ENST00000501396, p1@ENST00000523825, p1@uc003ysc.1, p1@uc003ysd.1 |
| 4.46e-160 | FFCP PHASE2:Hg19::chr8:128433201..128433228,-#_443c1ec521d038baee20b34c8e4ba8ef | p1@ENST00000501396, p1@ENST00000523825, p1@uc003ysc.1, p1@uc003ysd.1 |
| 6.45e-160 | FFCP PHASE2:Hg19::chr8:128270900..128270912,-#_e3556bdc15dc8c228fd6c156e8dbbc38 | p@chr8:128270900..128270912, - |
| 6.45e-160 | FFCP PHASE1:Hg19::chr8:128270900..128270912,-#_e3556bdc15dc8c228fd6c156e8dbbc38 | p@chr8:128270900..128270912, - |
| 7.75e-160 | FFCP PHASE2:Hg19::chr4:173884019..173884038,+#_f8a288bf8ef945d17c4ce2b9bace110e | p@chr4:173884019..173884038, + |
| 7.75e-160 | FFCP PHASE1:Hg19::chr4:173884019..173884038,+#_f8a288bf8ef945d17c4ce2b9bace110e | p@chr4:173884019..173884038, + |
| 1.12e-159 | FFCP PHASE1:Hg19::chr4:173883984..173884005,+#_6a7707e598db603939b3ee31c7db8646 | p@chr4:173883984..173884005, + |
| 1.12e-159 | FFCP PHASE2:Hg19::chr4:173883984..173884005,+#_6a7707e598db603939b3ee31c7db8646 | p@chr4:173883984..173884005, + |
| 1.94e-159 | FFCP PHASE1:Hg19::chr2:10529417..10529422,+#_993c9e4302f3d8695c8f2f5cfc6273aa | p@chr2:10529417..10529422, + |
| 1.94e-159 | FFCP PHASE2:Hg19::chr2:10529417..10529422,+#_993c9e4302f3d8695c8f2f5cfc6273aa | p@chr2:10529417..10529422, + |
| 8.17e-155 | FFCP PHASE1:Hg19::chr2:53732986..53732989,-#_12626b5c202a46d180d20a0103cbcbb7 | p@chr2:53732986..53732989, - |
| 8.17e-155 | FFCP PHASE2:Hg19::chr2:53732986..53732989,-#_12626b5c202a46d180d20a0103cbcbb7 | p@chr2:53732986..53732989, - |
| 9.97e-155 | FFCP PHASE1:Hg19::chr2:233246589..233246598,+#_a147c73fc218907a5747800c9cbbc5b5 | p12@ALPP |
| 9.97e-155 | FFCP PHASE2:Hg19::chr2:233246589..233246598,+#_a147c73fc218907a5747800c9cbbc5b5 | p12@ALPP |
| 1.22e-154 | FFCP PHASE1:Hg19::chr16:87874486..87874492,-#_614f5b65bb678aa09a279f35b57782d9 | p@chr16:87874486..87874492, - |
| 1.22e-154 | FFCP PHASE2:Hg19::chr16:87874486..87874492,-#_614f5b65bb678aa09a279f35b57782d9 | p@chr16:87874486..87874492, - |
| 4.02e-154 | FFCP PHASE1:Hg19::chr5:370156..370169,+#_c3261f3e2cbd239136fea4386e9b7d26 | p@chr5:370156..370169, + |
| 4.02e-154 | FFCP PHASE2:Hg19::chr8:128270948..128270958,-#_c3261f3e2cbd239136fea4386e9b7d26 | p@chr8:128270948..128270958, - |
| 4.02e-154 | FFCP PHASE2:Hg19::chr5:370156..370169,+#_c3261f3e2cbd239136fea4386e9b7d26 | p@chr5:370156..370169, + |
| 4.02e-154 | FFCP PHASE1:Hg19::chr8:128270948..128270958,-#_c3261f3e2cbd239136fea4386e9b7d26 | p@chr8:128270948..128270958, - |
| 3.95e-152 | FFCP PHASE2:Hg19::chr2:233246442..233246451,+#_38471b6084eef96fc4d508af99cda1ce | p16@ALPP |
| 3.95e-152 | FFCP PHASE1:Hg19::chr16:87869840..87869849,+#_38471b6084eef96fc4d508af99cda1ce | p@chr16:87869840..87869849, + |
| 3.95e-152 | FFCP PHASE1:Hg19::chr9:84380797..84380800,+#_38471b6084eef96fc4d508af99cda1ce | p@chr9:84380797..84380800, + |
| 3.95e-152 | FFCP PHASE2:Hg19::chr16:87869840..87869849,+#_38471b6084eef96fc4d508af99cda1ce | p@chr16:87869840..87869849, + |
| 3.95e-152 | FFCP PHASE2:Hg19::chr9:84380797..84380800,+#_38471b6084eef96fc4d508af99cda1ce | p@chr9:84380797..84380800, + |
| 3.95e-152 | FFCP PHASE1:Hg19::chr2:233246442..233246451,+#_38471b6084eef96fc4d508af99cda1ce | p16@ALPP |
| 1.31e-147 | FFCP PHASE1:Hg19::chr5:147582537..147582549,+#_46e72dcb6c299b91a6a1e787bac6fd74 | p4@SPINK6 |
| 1.31e-147 | FFCP PHASE2:Hg19::chr2:233243964..233243976,+#_46e72dcb6c299b91a6a1e787bac6fd74 | p@chr2:233243964..233243976, + |
| 1.31e-147 | FFCP PHASE1:Hg19::chr17:9745568..9745583,+#_46e72dcb6c299b91a6a1e787bac6fd74 | p8@GLP2R |
| 1.31e-147 | FFCP PHASE2:Hg19::chr17:9745568..9745583,+#_46e72dcb6c299b91a6a1e787bac6fd74 | p8@GLP2R |
| 1.31e-147 | FFCP PHASE1:Hg19::chr2:233246828..233246839,+#_46e72dcb6c299b91a6a1e787bac6fd74 | p4@ALPP |
| 1.31e-147 | FFCP PHASE2:Hg19::chr5:147582537..147582549,+#_46e72dcb6c299b91a6a1e787bac6fd74 | p4@SPINK6 |
| 1.31e-147 | FFCP PHASE2:Hg19::chr2:233246828..233246839,+#_46e72dcb6c299b91a6a1e787bac6fd74 | p4@ALPP |
| 1.31e-147 | FFCP PHASE1:Hg19::chr2:233243964..233243976,+#_46e72dcb6c299b91a6a1e787bac6fd74 | p@chr2:233243964..233243976, + |
| 1.56e-147 | FFCP PHASE2:Hg19::chr8:128231456..128231465,-#_df662a21fb23a7555c9efc2c37433b0a | p13@ENST00000500112, p13@uc003ysa.1 |
| 1.56e-147 | FFCP PHASE1:Hg19::chr8:128231456..128231465,-#_df662a21fb23a7555c9efc2c37433b0a | p13@ENST00000500112, p13@uc003ysa.1 |
| 1.84e-147 | FFCP PHASE2:Hg19::chr1:207262478..207262493,+#_51319a2f977ddc73dceb4277672d5c55 | p14@C4BPB |
| 1.84e-147 | FFCP PHASE1:Hg19::chr1:207262478..207262493,+#_51319a2f977ddc73dceb4277672d5c55 | p14@C4BPB |
| 3.06e-147 | FFCP PHASE2:Hg19::chr2:233324211..233324229,-#_e43ac97a08ad7e3300b6d3886777d4c7 | p@chr2:233324211..233324229, - |
| 3.06e-147 | FFCP PHASE1:Hg19::chr2:233321333..233321358,+#_e43ac97a08ad7e3300b6d3886777d4c7 | p@chr2:233321333..233321358, + |
| 3.06e-147 | FFCP PHASE1:Hg19::chr2:233324211..233324229,-#_e43ac97a08ad7e3300b6d3886777d4c7 | p@chr2:233324211..233324229, - |
| 3.06e-147 | FFCP PHASE2:Hg19::chr2:233321333..233321358,+#_e43ac97a08ad7e3300b6d3886777d4c7 | p@chr2:233321333..233321358, + |
| 3.62e-147 | FFCP PHASE2:Hg19::chr2:211427642..211427670,+#_961ccb87c70be99555e3d74e13fdba53 | p@chr2:211427642..211427670, + |
| 3.62e-147 | FFCP PHASE1:Hg19::chr2:211427642..211427670,+#_961ccb87c70be99555e3d74e13fdba53 | p@chr2:211427642..211427670, + |
| 4.28e-147 | FFCP PHASE1:Hg19::chr12:51923800..51923807,+#_b655998afe5ccc72fa1f9279338f9209 | p@chr12:51923800..51923807, + |
| 4.28e-147 | FFCP PHASE2:Hg19::chr12:51923800..51923807,+#_b655998afe5ccc72fa1f9279338f9209 | p@chr12:51923800..51923807, + |
| 6.0e-147 | FFCP PHASE1:Hg19::chr7:54879745..54879759,-#_2ca62294d9adfa4ee8403d562666c400 | p@chr7:54879745..54879759, - |
| 6.0e-147 | FFCP PHASE2:Hg19::chr7:54879745..54879759,-#_2ca62294d9adfa4ee8403d562666c400 | p@chr7:54879745..54879759, - |
| 3.23e-146 | FFCP PHASE2:Hg19::chr4:24322838..24322853,-#_e728b4221a410eec941f2bac9e23e3b5 | p@chr4:24322838..24322853, - |
| 3.23e-146 | FFCP PHASE1:Hg19::chr4:24322838..24322853,-#_e728b4221a410eec941f2bac9e23e3b5 | p@chr4:24322838..24322853, - |
| 3.82e-146 | FFCP PHASE1:Hg19::chr6:64282122..64282131,+#_775a1a8ae43638bfc2baf86a779281d4 | p40@PTP4A1 |
| 3.82e-146 | FFCP PHASE2:Hg19::chr6:64282122..64282131,+#_775a1a8ae43638bfc2baf86a779281d4 | p40@PTP4A1 |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical structure consisting of a narrowly triangular chamber supported by a series of semicircular cartilages in which part of the sound-production system is located.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
