Personal tools

UBERON:0001737: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0001737
|alt_id=UBERON:FMA_55097-MA_0000414-MIAA_0000187-XAO_0003081
|name=larynx
|namespace=
|def="Heterogeneous cluster that connects the pharynx to the tracheobronchial tree[FMA]." [FMA:55097, Wikipedia:Larynx]
|xref=AAO:0000268;;BTO:0001208;;EFO:0000838;;EHDAA2:0004063;;EMAPA:18333;;EV:0100039;;FMA:55097;;GAID:108;;galen:Larynx;;http://upload.wikimedia.org/wikipedia/commons/8/8a/Larynx_external_en.svg;;MA:0000414;;MAT:0000187;;MESH:A.04.329;;MIAA:0000187;;ncithesaurus:Larynx;;OpenCyc:Mx4rvViOnZwpEbGdrcN5Y29ycA;;SCTID:181212004;;VHOG:0001279;;XAO:0003081
|is_a=UBERON:0000477;;UBERON:0004119
|synonym=
|comment=This class was created automatically from a combination of ontologies
|comment=This class was created automatically from a combination of ontologies
|alt_id=UBERON:FMA_55097-MA_0000414-MIAA_0000187-XAO_0003081
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Heterogeneous cluster that connects the pharynx to the tracheobronchial tree[FMA]." [FMA:55097, Wikipedia:Larynx]
|subset=uberon_slim
|derives_from=
|derives_from=
|develops_from=
|develops_from=UBERON:0008947
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0001737
|is_a=UBERON:0000477 ;;UBERON:0004119
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=larynx
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000065
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Anatomical structure consisting of a narrowly triangular chamber supported by a series of semicircular cartilages in which part of the sound-production system is located.[AAO]" xsd:string
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Anatomical structure consisting of a narrowly triangular chamber supported by a series of semicircular cartilages in which part of the sound-production system is located.[AAO]" xsd:string
|is_obsolete=
|subset=uberon_slim
|preceded_by=
|synonym=
|union_of=
|xref=AAO:0000268;;BTO:0001208;;EFO:0000838;;EHDAA2:0004063;;EMAPA:18333;;EV:0100039;;FMA:55097;;GAID:108;;galen:Larynx;;http://upload.wikimedia.org/wikipedia/commons/8/8a/Larynx_external_en.svg;;MA:0000414;;MAT:0000187;;MESH:A.04.329;;MIAA:0000187;;ncithesaurus:Larynx;;OpenCyc:Mx4rvViOnZwpEbGdrcN5Y29ycA;;SCTID:181212004;;VHOG:0001279;;XAO:0003081
}}
}}

Latest revision as of 17:20, 12 September 2014

Name:larynx
Namespace:FANTOM
Definition:"Heterogeneous cluster that connects the pharynx to the tracheobronchial tree[FMA]." [FMA:55097, Wikipedia:Larynx]
Xrefs:
links:

AAO:0000268
BTO:0001208
EFO:0000838
EHDAA2:0004063
EMAPA:18333
EV:0100039
FMA:55097
GAID:108
galen:Larynx
[1]
MA:0000414
MAT:0000187
MESH:A.04.329
MIAA:0000187
ncithesaurus:Larynx
OpenCyc:Mx4rvViOnZwpEbGdrcN5Y29ycA
SCTID:181212004
VHOG:0001279

XAO:0003081
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:FMA_55097-MA_0000414-MIAA_0000187-XAO_0003081
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000477(anatomical cluster),UBERON:0004119(endoderm-derived structure)
develops_from:UBERON:0008947(respiratory primordium)
part_of:UBERON:0000065(respiratory tract)



Children

derives from:FF:0104978 (HEp-2 cell sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

  • 11890-125D9 (Hep-2 cells treated with Streptococci strain 5448, biol_rep1)
  • 11891-125E1 (Hep-2 cells treated with Streptococci strain 5448, biol_rep2)
  • 11892-125E2 (Hep-2 cells treated with Streptococci strain 5448, biol_rep3)
  • 11893-125E3
  • 11894-125E4 (Hep-2 cells treated with Streptococci strain JRS4, biol_rep1)
  • 11895-125E5 (Hep-2 cells treated with Streptococci strain JRS4, biol_rep2)
  • 11896-125E6 (Hep-2 cells treated with Streptococci strain JRS4, biol_rep3)
  • 11897-125E7
  • 11898-125E8 (Hep-2 cells mock treated, biol_rep1)
  • 11899-125E9 (Hep-2 cells mock treated, biol_rep2)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001737 (larynx), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.26e-195FFCP PHASE2:Hg19::chr2:233246932..233246943,+#_5335a0e50c3d572fbef1349230bd2924p6@ALPP
2.26e-195FFCP PHASE1:Hg19::chr2:233244912..233244922,+#_5335a0e50c3d572fbef1349230bd2924p2@AK297894
2.26e-195FFCP PHASE2:Hg19::chr17:79098633..79098647,-#_5335a0e50c3d572fbef1349230bd2924p@chr17:79098633..79098647, -
2.26e-195FFCP PHASE1:Hg19::chr17:79098633..79098647,-#_5335a0e50c3d572fbef1349230bd2924p@chr17:79098633..79098647, -
2.26e-195FFCP PHASE1:Hg19::chr16:87869864..87869878,+#_5335a0e50c3d572fbef1349230bd2924p@chr16:87869864..87869878, +
2.26e-195FFCP PHASE1:Hg19::chr8:128241234..128241241,-#_5335a0e50c3d572fbef1349230bd2924p7@uc003ysb.2
2.26e-195FFCP PHASE1:Hg19::chr2:233246932..233246943,+#_5335a0e50c3d572fbef1349230bd2924p6@ALPP
2.26e-195FFCP PHASE2:Hg19::chr16:87869864..87869878,+#_5335a0e50c3d572fbef1349230bd2924p@chr16:87869864..87869878, +
2.26e-195FFCP PHASE2:Hg19::chr2:233246459..233246472,+#_5335a0e50c3d572fbef1349230bd2924p9@ALPP
2.26e-195FFCP PHASE2:Hg19::chr2:233246793..233246841,-#_5335a0e50c3d572fbef1349230bd2924p1@ENST00000441266
2.26e-195FFCP PHASE2:Hg19::chr2:233244473..233244503,+#_5335a0e50c3d572fbef1349230bd2924p1@AK297894
2.26e-195FFCP PHASE1:Hg19::chr2:233246459..233246472,+#_5335a0e50c3d572fbef1349230bd2924p9@ALPP
2.26e-195FFCP PHASE2:Hg19::chr2:233244912..233244922,+#_5335a0e50c3d572fbef1349230bd2924p2@AK297894
2.26e-195FFCP PHASE1:Hg19::chr2:233246793..233246841,-#_5335a0e50c3d572fbef1349230bd2924p1@ENST00000441266
2.26e-195FFCP PHASE1:Hg19::chr2:233244473..233244503,+#_5335a0e50c3d572fbef1349230bd2924p1@AK297894
2.26e-195FFCP PHASE2:Hg19::chr8:128241234..128241241,-#_5335a0e50c3d572fbef1349230bd2924p7@uc003ysb.2
2.87e-176FFCP PHASE1:Hg19::chr7:54879838..54879849,-#_d8c52cce026694d651219f5e28aacbdep@chr7:54879838..54879849, -
2.87e-176FFCP PHASE2:Hg19::chrX:86868675..86868686,+#_d8c52cce026694d651219f5e28aacbdep@chrX:86868675..86868686, +
2.87e-176FFCP PHASE1:Hg19::chr4:123838984..123838995,-#_d8c52cce026694d651219f5e28aacbdep@chr4:123838984..123838995, -
2.87e-176FFCP PHASE2:Hg19::chr2:233246656..233246666,+#_d8c52cce026694d651219f5e28aacbdep8@ALPP
2.87e-176FFCP PHASE1:Hg19::chr4:134184041..134184064,-#_d8c52cce026694d651219f5e28aacbdep2@ENST00000507172
2.87e-176FFCP PHASE1:Hg19::chrX:86868675..86868686,+#_d8c52cce026694d651219f5e28aacbdep@chrX:86868675..86868686, +
2.87e-176FFCP PHASE2:Hg19::chr8:128265552..128265583,-#_d8c52cce026694d651219f5e28aacbdep@chr8:128265552..128265583, -
2.87e-176FFCP PHASE1:Hg19::chr2:233246656..233246666,+#_d8c52cce026694d651219f5e28aacbdep8@ALPP
2.87e-176FFCP PHASE2:Hg19::chr7:54879838..54879849,-#_d8c52cce026694d651219f5e28aacbdep@chr7:54879838..54879849, -
2.87e-176FFCP PHASE2:Hg19::chr4:123838984..123838995,-#_d8c52cce026694d651219f5e28aacbdep@chr4:123838984..123838995, -
2.87e-176FFCP PHASE1:Hg19::chr8:128265552..128265583,-#_d8c52cce026694d651219f5e28aacbdep@chr8:128265552..128265583, -
2.87e-176FFCP PHASE2:Hg19::chr4:134184041..134184064,-#_d8c52cce026694d651219f5e28aacbdep2@ENST00000507172
3.52e-176FFCP PHASE2:Hg19::chr2:233246988..233246995,+#_e7bc3cd678b1d55b46699e6281f6a43dp@chr2:233246988..233246995, +
3.52e-176FFCP PHASE1:Hg19::chr2:233246988..233246995,+#_e7bc3cd678b1d55b46699e6281f6a43dp@chr2:233246988..233246995, +
1.77e-175FFCP PHASE2:Hg19::chr8:128270857..128270869,-#_5413ac4eef2171120a0338b7979f4080p@chr8:128270857..128270869, -
1.77e-175FFCP PHASE1:Hg19::chr19:3603296..3603307,+#_5413ac4eef2171120a0338b7979f4080p@chr19:3603296..3603307, +
1.77e-175FFCP PHASE1:Hg19::chr8:128269736..128269748,-#_5413ac4eef2171120a0338b7979f4080p@chr8:128269736..128269748, -
1.77e-175FFCP PHASE1:Hg19::chr8:128270857..128270869,-#_5413ac4eef2171120a0338b7979f4080p@chr8:128270857..128270869, -
1.77e-175FFCP PHASE2:Hg19::chr8:128270240..128270252,-#_5413ac4eef2171120a0338b7979f4080p@chr8:128270240..128270252, -
1.77e-175FFCP PHASE2:Hg19::chr19:3603296..3603307,+#_5413ac4eef2171120a0338b7979f4080p@chr19:3603296..3603307, +
1.77e-175FFCP PHASE1:Hg19::chr8:128270240..128270252,-#_5413ac4eef2171120a0338b7979f4080p@chr8:128270240..128270252, -
1.77e-175FFCP PHASE2:Hg19::chr8:128269736..128269748,-#_5413ac4eef2171120a0338b7979f4080p@chr8:128269736..128269748, -
9.96e-174FFCP PHASE2:Hg19::chr4:134183951..134183960,-#_69c8395b2cee5d642b2d4f014de09eecp4@ENST00000507172
9.96e-174FFCP PHASE1:Hg19::chr4:134183951..134183960,-#_69c8395b2cee5d642b2d4f014de09eecp4@ENST00000507172
1.23e-160FFCP PHASE1:Hg19::chr2:233243233..233243245,+#_ba2c638bddc166c41c26feccc8f33958p5@ALPP
1.23e-160FFCP PHASE1:Hg19::chr1:207262293..207262306,+#_ba2c638bddc166c41c26feccc8f33958p17@C4BPB
1.23e-160FFCP PHASE2:Hg19::chr11:3147806..3147811,-#_ba2c638bddc166c41c26feccc8f33958p7@OSBPL5
1.23e-160FFCP PHASE2:Hg19::chr2:233243233..233243245,+#_ba2c638bddc166c41c26feccc8f33958p5@ALPP
1.23e-160FFCP PHASE2:Hg19::chr1:207262293..207262306,+#_ba2c638bddc166c41c26feccc8f33958p17@C4BPB
1.23e-160FFCP PHASE1:Hg19::chr11:3147806..3147811,-#_ba2c638bddc166c41c26feccc8f33958p7@OSBPL5
2.57e-160FFCP PHASE2:Hg19::chr11:4154830..4154835,+#_5ccc6a455012eb4c8197320d6bb3dd56p@chr11:4154830..4154835, +
2.57e-160FFCP PHASE1:Hg19::chr11:4154830..4154835,+#_5ccc6a455012eb4c8197320d6bb3dd56p@chr11:4154830..4154835, +
4.46e-160FFCP PHASE2:Hg19::chr8:128433201..128433228,-#_443c1ec521d038baee20b34c8e4ba8efp1@ENST00000501396, p1@ENST00000523825, p1@uc003ysc.1, p1@uc003ysd.1
4.46e-160FFCP PHASE1:Hg19::chr8:128433201..128433228,-#_443c1ec521d038baee20b34c8e4ba8efp1@ENST00000501396, p1@ENST00000523825, p1@uc003ysc.1, p1@uc003ysd.1
6.45e-160FFCP PHASE2:Hg19::chr8:128270900..128270912,-#_e3556bdc15dc8c228fd6c156e8dbbc38p@chr8:128270900..128270912, -
6.45e-160FFCP PHASE1:Hg19::chr8:128270900..128270912,-#_e3556bdc15dc8c228fd6c156e8dbbc38p@chr8:128270900..128270912, -
7.75e-160FFCP PHASE2:Hg19::chr4:173884019..173884038,+#_f8a288bf8ef945d17c4ce2b9bace110ep@chr4:173884019..173884038, +
7.75e-160FFCP PHASE1:Hg19::chr4:173884019..173884038,+#_f8a288bf8ef945d17c4ce2b9bace110ep@chr4:173884019..173884038, +
1.12e-159FFCP PHASE1:Hg19::chr4:173883984..173884005,+#_6a7707e598db603939b3ee31c7db8646p@chr4:173883984..173884005, +
1.12e-159FFCP PHASE2:Hg19::chr4:173883984..173884005,+#_6a7707e598db603939b3ee31c7db8646p@chr4:173883984..173884005, +
1.94e-159FFCP PHASE2:Hg19::chr2:10529417..10529422,+#_993c9e4302f3d8695c8f2f5cfc6273aap@chr2:10529417..10529422, +
1.94e-159FFCP PHASE1:Hg19::chr2:10529417..10529422,+#_993c9e4302f3d8695c8f2f5cfc6273aap@chr2:10529417..10529422, +
8.17e-155FFCP PHASE2:Hg19::chr2:53732986..53732989,-#_12626b5c202a46d180d20a0103cbcbb7p@chr2:53732986..53732989, -
8.17e-155FFCP PHASE1:Hg19::chr2:53732986..53732989,-#_12626b5c202a46d180d20a0103cbcbb7p@chr2:53732986..53732989, -
9.97e-155FFCP PHASE1:Hg19::chr2:233246589..233246598,+#_a147c73fc218907a5747800c9cbbc5b5p12@ALPP
9.97e-155FFCP PHASE2:Hg19::chr2:233246589..233246598,+#_a147c73fc218907a5747800c9cbbc5b5p12@ALPP
1.22e-154FFCP PHASE1:Hg19::chr16:87874486..87874492,-#_614f5b65bb678aa09a279f35b57782d9p@chr16:87874486..87874492, -
1.22e-154FFCP PHASE2:Hg19::chr16:87874486..87874492,-#_614f5b65bb678aa09a279f35b57782d9p@chr16:87874486..87874492, -
4.02e-154FFCP PHASE1:Hg19::chr5:370156..370169,+#_c3261f3e2cbd239136fea4386e9b7d26p@chr5:370156..370169, +
4.02e-154FFCP PHASE2:Hg19::chr8:128270948..128270958,-#_c3261f3e2cbd239136fea4386e9b7d26p@chr8:128270948..128270958, -
4.02e-154FFCP PHASE2:Hg19::chr5:370156..370169,+#_c3261f3e2cbd239136fea4386e9b7d26p@chr5:370156..370169, +
4.02e-154FFCP PHASE1:Hg19::chr8:128270948..128270958,-#_c3261f3e2cbd239136fea4386e9b7d26p@chr8:128270948..128270958, -
3.95e-152FFCP PHASE1:Hg19::chr9:84380797..84380800,+#_38471b6084eef96fc4d508af99cda1cep@chr9:84380797..84380800, +
3.95e-152FFCP PHASE2:Hg19::chr16:87869840..87869849,+#_38471b6084eef96fc4d508af99cda1cep@chr16:87869840..87869849, +
3.95e-152FFCP PHASE2:Hg19::chr2:233246442..233246451,+#_38471b6084eef96fc4d508af99cda1cep16@ALPP
3.95e-152FFCP PHASE1:Hg19::chr2:233246442..233246451,+#_38471b6084eef96fc4d508af99cda1cep16@ALPP
3.95e-152FFCP PHASE2:Hg19::chr9:84380797..84380800,+#_38471b6084eef96fc4d508af99cda1cep@chr9:84380797..84380800, +
3.95e-152FFCP PHASE1:Hg19::chr16:87869840..87869849,+#_38471b6084eef96fc4d508af99cda1cep@chr16:87869840..87869849, +
1.31e-147FFCP PHASE1:Hg19::chr17:9745568..9745583,+#_46e72dcb6c299b91a6a1e787bac6fd74p8@GLP2R
1.31e-147FFCP PHASE2:Hg19::chr17:9745568..9745583,+#_46e72dcb6c299b91a6a1e787bac6fd74p8@GLP2R
1.31e-147FFCP PHASE1:Hg19::chr2:233246828..233246839,+#_46e72dcb6c299b91a6a1e787bac6fd74p4@ALPP
1.31e-147FFCP PHASE2:Hg19::chr2:233243964..233243976,+#_46e72dcb6c299b91a6a1e787bac6fd74p@chr2:233243964..233243976, +
1.31e-147FFCP PHASE2:Hg19::chr5:147582537..147582549,+#_46e72dcb6c299b91a6a1e787bac6fd74p4@SPINK6
1.31e-147FFCP PHASE1:Hg19::chr2:233243964..233243976,+#_46e72dcb6c299b91a6a1e787bac6fd74p@chr2:233243964..233243976, +
1.31e-147FFCP PHASE2:Hg19::chr2:233246828..233246839,+#_46e72dcb6c299b91a6a1e787bac6fd74p4@ALPP
1.31e-147FFCP PHASE1:Hg19::chr5:147582537..147582549,+#_46e72dcb6c299b91a6a1e787bac6fd74p4@SPINK6
1.56e-147FFCP PHASE2:Hg19::chr8:128231456..128231465,-#_df662a21fb23a7555c9efc2c37433b0ap13@ENST00000500112, p13@uc003ysa.1
1.56e-147FFCP PHASE1:Hg19::chr8:128231456..128231465,-#_df662a21fb23a7555c9efc2c37433b0ap13@ENST00000500112, p13@uc003ysa.1
1.84e-147FFCP PHASE2:Hg19::chr1:207262478..207262493,+#_51319a2f977ddc73dceb4277672d5c55p14@C4BPB
1.84e-147FFCP PHASE1:Hg19::chr1:207262478..207262493,+#_51319a2f977ddc73dceb4277672d5c55p14@C4BPB
3.06e-147FFCP PHASE2:Hg19::chr2:233321333..233321358,+#_e43ac97a08ad7e3300b6d3886777d4c7p@chr2:233321333..233321358, +
3.06e-147FFCP PHASE2:Hg19::chr2:233324211..233324229,-#_e43ac97a08ad7e3300b6d3886777d4c7p@chr2:233324211..233324229, -
3.06e-147FFCP PHASE1:Hg19::chr2:233321333..233321358,+#_e43ac97a08ad7e3300b6d3886777d4c7p@chr2:233321333..233321358, +
3.06e-147FFCP PHASE1:Hg19::chr2:233324211..233324229,-#_e43ac97a08ad7e3300b6d3886777d4c7p@chr2:233324211..233324229, -
3.62e-147FFCP PHASE2:Hg19::chr2:211427642..211427670,+#_961ccb87c70be99555e3d74e13fdba53p@chr2:211427642..211427670, +
3.62e-147FFCP PHASE1:Hg19::chr2:211427642..211427670,+#_961ccb87c70be99555e3d74e13fdba53p@chr2:211427642..211427670, +
4.28e-147FFCP PHASE2:Hg19::chr12:51923800..51923807,+#_b655998afe5ccc72fa1f9279338f9209p@chr12:51923800..51923807, +
4.28e-147FFCP PHASE1:Hg19::chr12:51923800..51923807,+#_b655998afe5ccc72fa1f9279338f9209p@chr12:51923800..51923807, +
6.0e-147FFCP PHASE1:Hg19::chr7:54879745..54879759,-#_2ca62294d9adfa4ee8403d562666c400p@chr7:54879745..54879759, -
6.0e-147FFCP PHASE2:Hg19::chr7:54879745..54879759,-#_2ca62294d9adfa4ee8403d562666c400p@chr7:54879745..54879759, -
3.23e-146FFCP PHASE2:Hg19::chr4:24322838..24322853,-#_e728b4221a410eec941f2bac9e23e3b5p@chr4:24322838..24322853, -
3.23e-146FFCP PHASE1:Hg19::chr4:24322838..24322853,-#_e728b4221a410eec941f2bac9e23e3b5p@chr4:24322838..24322853, -
3.82e-146FFCP PHASE1:Hg19::chr6:64282122..64282131,+#_775a1a8ae43638bfc2baf86a779281d4p40@PTP4A1
3.82e-146FFCP PHASE2:Hg19::chr6:64282122..64282131,+#_775a1a8ae43638bfc2baf86a779281d4p40@PTP4A1










Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical structure consisting of a narrowly triangular chamber supported by a series of semicircular cartilages in which part of the sound-production system is located.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0001737&oldid=3277275"