UBERON:0001735: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 13: | Line 13: | ||
|located_in= | |located_in= | ||
|name=tonsillar ring | |name=tonsillar ring | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0001042 | |part_of=UBERON:0001042 | ||
Latest revision as of 17:20, 12 September 2014
| Name: | tonsillar ring | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "lymphoid tissue ring located in the pharynx and to the back of the oral cavity. The ring consists of (from superior to inferior): Pharyngeal tonsil (also known as 'adenoids' when infected) Tubal tonsil (where Eustachian tube opens in the nasopharynx) Palatine tonsils (commonly called 'the tonsils' in the vernacular, less commonly termed 'faucial tonsils') Lingual tonsils Some animals, but not humans, have one or two additional tonsils: Soft palate tonsil Paraepiglottic tonsil[WP]." [Wikipedia:Waldeyer's_ring] | ||
| Xrefs: |
| ||
| Synonyms: |
"anulus lymphoideus pharyngis" EXACT [FMA:55070, FMA:TA] "oropharyngeal lymphoid tissue" EXACT [] "pharyngeal lymphatic ring" EXACT [] "pharyngeal lymphoid ring" EXACT [] "Waldeyer's ring" EXACT [] "Waldeyer's tonsillar ring" EXACT [] | ||
| Comments: | see also FMA:79771 naso-pharyngeal lymphoid tissue | ||
| Alt_id: | UBERON:FMA_55070-MA_0000752 | ||
| Subset: | uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0001962(gut-associated lymphoid tissue),UBERON:0004119(endoderm-derived structure) |
|---|---|
| part_of: | UBERON:0001042(chordate pharynx) |
Children
| part of: | UBERON:0002372 (tonsil) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10047-101G2 (tonsil, adult, pool1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001735 (tonsillar ring), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.42e-195 | FFCP PHASE2:Hg19::chr20:21684387..21684390,-#_6194236a6aa990405e0a42ae7d36f4fe | p2@ENST00000424377 |
| 5.42e-195 | FFCP PHASE2:Hg19::chr16:12334592..12334599,+#_6194236a6aa990405e0a42ae7d36f4fe | p@chr16:12334592..12334599, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr2:89459813..89459818,-#_6194236a6aa990405e0a42ae7d36f4fe | p1@IGKV6-21 |
| 5.42e-195 | FFCP PHASE2:Hg19::chr19:5850872..5850893,-#_6194236a6aa990405e0a42ae7d36f4fe | p@chr19:5850872..5850893, - |
| 5.42e-195 | FFCP PHASE2:Hg19::chr14:107049312..107049315,-#_6194236a6aa990405e0a42ae7d36f4fe | p2@IGHV3-53 |
| 5.42e-195 | FFCP PHASE1:Hg19::chr16:12334592..12334599,+#_6194236a6aa990405e0a42ae7d36f4fe | p@chr16:12334592..12334599, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr16:12337006..12337010,+#_6194236a6aa990405e0a42ae7d36f4fe | p@chr16:12337006..12337010, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr12:53200416..53200421,+#_6194236a6aa990405e0a42ae7d36f4fe | p7@CU692075 |
| 5.42e-195 | FFCP PHASE1:Hg19::chr14:107049312..107049315,-#_6194236a6aa990405e0a42ae7d36f4fe | p2@IGHV3-53 |
| 5.42e-195 | FFCP PHASE1:Hg19::chr2:89459813..89459818,-#_6194236a6aa990405e0a42ae7d36f4fe | p1@IGKV6-21 |
| 5.42e-195 | FFCP PHASE1:Hg19::chr20:21684387..21684390,-#_6194236a6aa990405e0a42ae7d36f4fe | p2@ENST00000424377 |
| 5.42e-195 | FFCP PHASE1:Hg19::chr16:12337006..12337010,+#_6194236a6aa990405e0a42ae7d36f4fe | p@chr16:12337006..12337010, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr19:5850872..5850893,-#_6194236a6aa990405e0a42ae7d36f4fe | p@chr19:5850872..5850893, - |
| 5.42e-195 | FFCP PHASE1:Hg19::chr12:53200416..53200421,+#_6194236a6aa990405e0a42ae7d36f4fe | p7@CU692075 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr6:168095835..168095838,-#_f2d3308ecf3dfdd16e304473a9531cf3 | p@chr6:168095835..168095838, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr19:14662395..14662414,+#_f2d3308ecf3dfdd16e304473a9531cf3 | p@chr19:14662395..14662414, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr20:31611186..31611191,+#_f2d3308ecf3dfdd16e304473a9531cf3 | p10@BPIFB6 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr11:1263622..1263627,+#_f2d3308ecf3dfdd16e304473a9531cf3 | p@chr11:1263622..1263627, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr11:1249994..1249999,+#_f2d3308ecf3dfdd16e304473a9531cf3 | p30@MUC5B |
| 9.37e-99 | FFCP PHASE2:Hg19::chr20:31611454..31611461,+#_f2d3308ecf3dfdd16e304473a9531cf3 | p8@BPIFB6 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr19:14662395..14662414,+#_f2d3308ecf3dfdd16e304473a9531cf3 | p@chr19:14662395..14662414, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr7:25361115..25361117,+#_f2d3308ecf3dfdd16e304473a9531cf3 | p@chr7:25361115..25361117, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr6:168095835..168095838,-#_f2d3308ecf3dfdd16e304473a9531cf3 | p@chr6:168095835..168095838, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr11:1249994..1249999,+#_f2d3308ecf3dfdd16e304473a9531cf3 | p30@MUC5B |
| 9.37e-99 | FFCP PHASE2:Hg19::chr20:31611186..31611191,+#_f2d3308ecf3dfdd16e304473a9531cf3 | p10@BPIFB6 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr20:31611454..31611461,+#_f2d3308ecf3dfdd16e304473a9531cf3 | p8@BPIFB6 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr11:1263622..1263627,+#_f2d3308ecf3dfdd16e304473a9531cf3 | p@chr11:1263622..1263627, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr7:25361115..25361117,+#_f2d3308ecf3dfdd16e304473a9531cf3 | p@chr7:25361115..25361117, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr20:36694529..36694537,+#_e8dce077d4adc4df76f9d151216087cd | p30@RPRD1B |
| 2.55e-98 | FFCP PHASE1:Hg19::chr12:52478564..52478569,+#_e8dce077d4adc4df76f9d151216087cd | p@chr12:52478564..52478569, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr4:8437851..8437881,+#_e8dce077d4adc4df76f9d151216087cd | p6@METTL19 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr11:1260725..1260734,+#_e8dce077d4adc4df76f9d151216087cd | p@chr11:1260725..1260734, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr10:135337234..135337244,-#_e8dce077d4adc4df76f9d151216087cd | p@chr10:135337234..135337244, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr16:70602961..70602972,+#_e8dce077d4adc4df76f9d151216087cd | p@chr16:70602961..70602972, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr11:1263382..1263385,+#_e8dce077d4adc4df76f9d151216087cd | p@chr11:1263382..1263385, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr12:52478564..52478569,+#_e8dce077d4adc4df76f9d151216087cd | p@chr12:52478564..52478569, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr20:36694529..36694537,+#_e8dce077d4adc4df76f9d151216087cd | p30@RPRD1B |
| 2.55e-98 | FFCP PHASE2:Hg19::chr11:1260725..1260734,+#_e8dce077d4adc4df76f9d151216087cd | p@chr11:1260725..1260734, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr4:8437851..8437881,+#_e8dce077d4adc4df76f9d151216087cd | p6@METTL19 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr16:70602961..70602972,+#_e8dce077d4adc4df76f9d151216087cd | p@chr16:70602961..70602972, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr10:135337234..135337244,-#_e8dce077d4adc4df76f9d151216087cd | p@chr10:135337234..135337244, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr11:1263382..1263385,+#_e8dce077d4adc4df76f9d151216087cd | p@chr11:1263382..1263385, + |
| 1.23e-66 | FFCP PHASE2:Hg19::chr1:157567826..157567835,-#_352a61c4fb79a4b9694d56b285e8ad4b | p2@FCRL4 |
| 1.23e-66 | FFCP PHASE2:Hg19::chr12:52478546..52478552,+#_352a61c4fb79a4b9694d56b285e8ad4b | p@chr12:52478546..52478552, + |
| 1.23e-66 | FFCP PHASE1:Hg19::chr1:157567826..157567835,-#_352a61c4fb79a4b9694d56b285e8ad4b | p2@FCRL4 |
| 1.23e-66 | FFCP PHASE1:Hg19::chr12:52478546..52478552,+#_352a61c4fb79a4b9694d56b285e8ad4b | p@chr12:52478546..52478552, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr20:31612754..31612763,+#_33305bf993690d21578d93e8722b5d2d | p@chr20:31612754..31612763, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr19:36640447..36640459,+#_33305bf993690d21578d93e8722b5d2d | p@chr19:36640447..36640459, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr11:1265985..1265990,+#_33305bf993690d21578d93e8722b5d2d | p@chr11:1265985..1265990, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr14:103560509..103560517,+#_33305bf993690d21578d93e8722b5d2d | p@chr14:103560509..103560517, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr20:62321640..62321645,+#_33305bf993690d21578d93e8722b5d2d | p1@BC131817 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr13:107026326..107026335,-#_33305bf993690d21578d93e8722b5d2d | p@chr13:107026326..107026335, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr14:103560509..103560517,+#_33305bf993690d21578d93e8722b5d2d | p@chr14:103560509..103560517, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr11:1265985..1265990,+#_33305bf993690d21578d93e8722b5d2d | p@chr11:1265985..1265990, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr13:107026326..107026335,-#_33305bf993690d21578d93e8722b5d2d | p@chr13:107026326..107026335, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr20:31612754..31612763,+#_33305bf993690d21578d93e8722b5d2d | p@chr20:31612754..31612763, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr20:62321640..62321645,+#_33305bf993690d21578d93e8722b5d2d | p1@BC131817 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr19:36640447..36640459,+#_33305bf993690d21578d93e8722b5d2d | p@chr19:36640447..36640459, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr3:187957664..187957675,+#_f9b77bc4d1c874689379273820f6965b | p58@LPP |
| 4.66e-66 | FFCP PHASE2:Hg19::chr1:152382640..152382645,+#_f9b77bc4d1c874689379273820f6965b | p@chr1:152382640..152382645, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr3:124535316..124535340,+#_f9b77bc4d1c874689379273820f6965b | p@chr3:124535316..124535340, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr12:53673418..53673427,+#_f9b77bc4d1c874689379273820f6965b | p9@ESPL1 |
| 4.66e-66 | FFCP PHASE2:Hg19::chr11:1283367..1283377,+#_f9b77bc4d1c874689379273820f6965b | p@chr11:1283367..1283377, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr3:187957646..187957656,+#_f9b77bc4d1c874689379273820f6965b | p43@LPP |
| 4.66e-66 | FFCP PHASE2:Hg19::chr19:51530837..51530842,-#_f9b77bc4d1c874689379273820f6965b | p10@KLK11 |
| 4.66e-66 | FFCP PHASE2:Hg19::chr16:69418649..69418659,-#_f9b77bc4d1c874689379273820f6965b | p@chr16:69418649..69418659, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr18:29006845..29006854,-#_f9b77bc4d1c874689379273820f6965b | p@chr18:29006845..29006854, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr6:30954084..30954093,-#_f9b77bc4d1c874689379273820f6965b | p@chr6:30954084..30954093, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr3:187957664..187957675,+#_f9b77bc4d1c874689379273820f6965b | p58@LPP |
| 4.66e-66 | FFCP PHASE1:Hg19::chr1:152382640..152382645,+#_f9b77bc4d1c874689379273820f6965b | p@chr1:152382640..152382645, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr18:49921251..49921263,+#_f9b77bc4d1c874689379273820f6965b | p@chr18:49921251..49921263, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr12:53673418..53673427,+#_f9b77bc4d1c874689379273820f6965b | p9@ESPL1 |
| 4.66e-66 | FFCP PHASE1:Hg19::chr11:1283367..1283377,+#_f9b77bc4d1c874689379273820f6965b | p@chr11:1283367..1283377, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr3:124535316..124535340,+#_f9b77bc4d1c874689379273820f6965b | p@chr3:124535316..124535340, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr16:69418649..69418659,-#_f9b77bc4d1c874689379273820f6965b | p@chr16:69418649..69418659, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr19:51530837..51530842,-#_f9b77bc4d1c874689379273820f6965b | p10@KLK11 |
| 4.66e-66 | FFCP PHASE1:Hg19::chr6:30954084..30954093,-#_f9b77bc4d1c874689379273820f6965b | p@chr6:30954084..30954093, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr3:187957646..187957656,+#_f9b77bc4d1c874689379273820f6965b | p43@LPP |
| 4.66e-66 | FFCP PHASE1:Hg19::chr18:49921251..49921263,+#_f9b77bc4d1c874689379273820f6965b | p@chr18:49921251..49921263, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr18:29006845..29006854,-#_f9b77bc4d1c874689379273820f6965b | p@chr18:29006845..29006854, - |
| 1.46e-50 | FFCP PHASE2:Hg19::chr8:101661845..101661855,-#_42a021e75fd68faeafe8e7424f3b5137 | p3@SNX31 |
| 1.46e-50 | FFCP PHASE1:Hg19::chr4:185197096..185197107,-#_42a021e75fd68faeafe8e7424f3b5137 | p@chr4:185197096..185197107, - |
| 1.46e-50 | FFCP PHASE2:Hg19::chr11:1262797..1262805,+#_42a021e75fd68faeafe8e7424f3b5137 | p@chr11:1262797..1262805, + |
| 1.46e-50 | FFCP PHASE2:Hg19::chr14:106237005..106237028,+#_42a021e75fd68faeafe8e7424f3b5137 | p@chr14:106237005..106237028, + |
| 1.46e-50 | FFCP PHASE2:Hg19::chr19:51531241..51531252,-#_42a021e75fd68faeafe8e7424f3b5137 | p9@KLK11 |
| 1.46e-50 | FFCP PHASE1:Hg19::chr8:101661845..101661855,-#_42a021e75fd68faeafe8e7424f3b5137 | p3@SNX31 |
| 1.46e-50 | FFCP PHASE2:Hg19::chr20:36694117..36694150,+#_42a021e75fd68faeafe8e7424f3b5137 | p24@RPRD1B |
| 1.46e-50 | FFCP PHASE1:Hg19::chr14:106237005..106237028,+#_42a021e75fd68faeafe8e7424f3b5137 | p@chr14:106237005..106237028, + |
| 1.46e-50 | FFCP PHASE2:Hg19::chr2:40136465..40136469,+#_42a021e75fd68faeafe8e7424f3b5137 | p@chr2:40136465..40136469, + |
| 1.46e-50 | FFCP PHASE2:Hg19::chr5:66194621..66194633,+#_42a021e75fd68faeafe8e7424f3b5137 | p@chr5:66194621..66194633, + |
| 1.46e-50 | FFCP PHASE1:Hg19::chr20:36694117..36694150,+#_42a021e75fd68faeafe8e7424f3b5137 | p24@RPRD1B |
| 1.46e-50 | FFCP PHASE1:Hg19::chr11:1262797..1262805,+#_42a021e75fd68faeafe8e7424f3b5137 | p@chr11:1262797..1262805, + |
| 1.46e-50 | FFCP PHASE2:Hg19::chr4:185197096..185197107,-#_42a021e75fd68faeafe8e7424f3b5137 | p@chr4:185197096..185197107, - |
| 1.46e-50 | FFCP PHASE1:Hg19::chr5:66194621..66194633,+#_42a021e75fd68faeafe8e7424f3b5137 | p@chr5:66194621..66194633, + |
| 1.46e-50 | FFCP PHASE1:Hg19::chr19:51531241..51531252,-#_42a021e75fd68faeafe8e7424f3b5137 | p9@KLK11 |
| 1.46e-50 | FFCP PHASE1:Hg19::chr2:40136465..40136469,+#_42a021e75fd68faeafe8e7424f3b5137 | p@chr2:40136465..40136469, + |
| 2.42e-50 | FFCP PHASE1:Hg19::chr14:106845840..106845851,-#_17ed8bc32520abe453b0f875d17d1500 | p1@IGHV3-35 |
| 2.42e-50 | FFCP PHASE2:Hg19::chr3:45065078..45065085,-#_17ed8bc32520abe453b0f875d17d1500 | p@chr3:45065078..45065085, - |
| 2.42e-50 | FFCP PHASE2:Hg19::chr11:1263486..1263491,+#_17ed8bc32520abe453b0f875d17d1500 | p@chr11:1263486..1263491, + |
| 2.42e-50 | FFCP PHASE1:Hg19::chr11:1276056..1276069,+#_17ed8bc32520abe453b0f875d17d1500 | p@chr11:1276056..1276069, + |
