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{{UBERON
{{UBERON
|id=UBERON:0001735
|alt_id=UBERON:FMA_55070-MA_0000752
|name=tonsillar ring
|namespace=
|def="lymphoid tissue ring located in the pharynx and to the back of the oral cavity. The ring consists of (from superior to inferior): Pharyngeal tonsil (also known as 'adenoids' when infected) Tubal tonsil (where Eustachian tube opens in the nasopharynx) Palatine tonsils (commonly called 'the tonsils' in the vernacular, less commonly termed 'faucial tonsils') Lingual tonsils Some animals, but not humans, have one or two additional tonsils: Soft palate tonsil Paraepiglottic tonsil[WP]." [Wikipedia:Waldeyer's_ring]
|xref=FMA:55070;;MA:0000752;;ncithesaurus:Waldeyers_Tonsillar_Ring;;SCTID:56411004
|is_a=UBERON:0000077;;UBERON:0001961
|synonym="anulus lymphoideus pharyngis" EXACT [FMA:55070, FMA:TA];;"oropharyngeal lymphoid tissue" EXACT [];;"pharyngeal lymphatic ring" EXACT [];;"pharyngeal lymphoid ring" EXACT [];;"Waldeyer's ring" EXACT [];;"Waldeyer's tonsillar ring" EXACT []
|comment=see also FMA:79771 naso-pharyngeal lymphoid tissue
|comment=see also FMA:79771 naso-pharyngeal lymphoid tissue
|alt_id=UBERON:FMA_55070-MA_0000752
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="lymphoid tissue ring located in the pharynx and to the back of the oral cavity. The ring consists of (from superior to inferior): Pharyngeal tonsil (also known as 'adenoids' when infected) Tubal tonsil (where Eustachian tube opens in the nasopharynx) Palatine tonsils (commonly called 'the tonsils' in the vernacular, less commonly termed 'faucial tonsils') Lingual tonsils Some animals, but not humans, have one or two additional tonsils: Soft palate tonsil Paraepiglottic tonsil[WP]." [Wikipedia:Waldeyer's_ring]
|subset=uberon_slim
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0001735
|is_a=UBERON:0001962 ;;UBERON:0004119
|is_obsolete=
|located_in=
|located_in=
|name=tonsillar ring
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0001042
|part_of=UBERON:0001042
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=uberon_slim
|preceded_by=
|synonym="anulus lymphoideus pharyngis" EXACT [FMA:55070, FMA:TA];;"oropharyngeal lymphoid tissue" EXACT [];;"pharyngeal lymphatic ring" EXACT [];;"pharyngeal lymphoid ring" EXACT [];;"Waldeyer's ring" EXACT [];;"Waldeyer's tonsillar ring" EXACT []
|union_of=
|xref=FMA:55070;;MA:0000752;;ncithesaurus:Waldeyers_Tonsillar_Ring;;SCTID:56411004
}}
}}

Latest revision as of 17:20, 12 September 2014

Name:tonsillar ring
Namespace:FANTOM
Definition:"lymphoid tissue ring located in the pharynx and to the back of the oral cavity. The ring consists of (from superior to inferior): Pharyngeal tonsil (also known as 'adenoids' when infected) Tubal tonsil (where Eustachian tube opens in the nasopharynx) Palatine tonsils (commonly called 'the tonsils' in the vernacular, less commonly termed 'faucial tonsils') Lingual tonsils Some animals, but not humans, have one or two additional tonsils: Soft palate tonsil Paraepiglottic tonsil[WP]." [Wikipedia:Waldeyer's_ring]
Xrefs:
links:

FMA:55070
MA:0000752
ncithesaurus:Waldeyers_Tonsillar_Ring

SCTID:56411004
Synonyms: "anulus lymphoideus pharyngis" EXACT [FMA:55070, FMA:TA]
"oropharyngeal lymphoid tissue" EXACT []
"pharyngeal lymphatic ring" EXACT []
"pharyngeal lymphoid ring" EXACT []
"Waldeyer's ring" EXACT []
"Waldeyer's tonsillar ring" EXACT []
Comments:see also FMA:79771 naso-pharyngeal lymphoid tissue
Alt_id: UBERON:FMA_55070-MA_0000752
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0001962(gut-associated lymphoid tissue),UBERON:0004119(endoderm-derived structure)
part_of:UBERON:0001042(chordate pharynx)



Children

part of:UBERON:0002372 (tonsil)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001735 (tonsillar ring), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr12:53200416..53200421,+#_6194236a6aa990405e0a42ae7d36f4fep7@CU692075
5.42e-195FFCP PHASE2:Hg19::chr2:89459813..89459818,-#_6194236a6aa990405e0a42ae7d36f4fep1@IGKV6-21
5.42e-195FFCP PHASE2:Hg19::chr20:21684387..21684390,-#_6194236a6aa990405e0a42ae7d36f4fep2@ENST00000424377
5.42e-195FFCP PHASE2:Hg19::chr16:12334592..12334599,+#_6194236a6aa990405e0a42ae7d36f4fep@chr16:12334592..12334599, +
5.42e-195FFCP PHASE1:Hg19::chr16:12334592..12334599,+#_6194236a6aa990405e0a42ae7d36f4fep@chr16:12334592..12334599, +
5.42e-195FFCP PHASE2:Hg19::chr19:5850872..5850893,-#_6194236a6aa990405e0a42ae7d36f4fep@chr19:5850872..5850893, -
5.42e-195FFCP PHASE2:Hg19::chr14:107049312..107049315,-#_6194236a6aa990405e0a42ae7d36f4fep2@IGHV3-53
5.42e-195FFCP PHASE2:Hg19::chr16:12337006..12337010,+#_6194236a6aa990405e0a42ae7d36f4fep@chr16:12337006..12337010, +
5.42e-195FFCP PHASE2:Hg19::chr12:53200416..53200421,+#_6194236a6aa990405e0a42ae7d36f4fep7@CU692075
5.42e-195FFCP PHASE1:Hg19::chr14:107049312..107049315,-#_6194236a6aa990405e0a42ae7d36f4fep2@IGHV3-53
5.42e-195FFCP PHASE1:Hg19::chr20:21684387..21684390,-#_6194236a6aa990405e0a42ae7d36f4fep2@ENST00000424377
5.42e-195FFCP PHASE1:Hg19::chr16:12337006..12337010,+#_6194236a6aa990405e0a42ae7d36f4fep@chr16:12337006..12337010, +
5.42e-195FFCP PHASE1:Hg19::chr2:89459813..89459818,-#_6194236a6aa990405e0a42ae7d36f4fep1@IGKV6-21
5.42e-195FFCP PHASE1:Hg19::chr19:5850872..5850893,-#_6194236a6aa990405e0a42ae7d36f4fep@chr19:5850872..5850893, -
9.37e-99FFCP PHASE2:Hg19::chr20:31611186..31611191,+#_f2d3308ecf3dfdd16e304473a9531cf3p10@BPIFB6
9.37e-99FFCP PHASE1:Hg19::chr20:31611454..31611461,+#_f2d3308ecf3dfdd16e304473a9531cf3p8@BPIFB6
9.37e-99FFCP PHASE2:Hg19::chr11:1263622..1263627,+#_f2d3308ecf3dfdd16e304473a9531cf3p@chr11:1263622..1263627, +
9.37e-99FFCP PHASE1:Hg19::chr7:25361115..25361117,+#_f2d3308ecf3dfdd16e304473a9531cf3p@chr7:25361115..25361117, +
9.37e-99FFCP PHASE1:Hg19::chr6:168095835..168095838,-#_f2d3308ecf3dfdd16e304473a9531cf3p@chr6:168095835..168095838, -
9.37e-99FFCP PHASE2:Hg19::chr19:14662395..14662414,+#_f2d3308ecf3dfdd16e304473a9531cf3p@chr19:14662395..14662414, +
9.37e-99FFCP PHASE1:Hg19::chr20:31611186..31611191,+#_f2d3308ecf3dfdd16e304473a9531cf3p10@BPIFB6
9.37e-99FFCP PHASE1:Hg19::chr11:1263622..1263627,+#_f2d3308ecf3dfdd16e304473a9531cf3p@chr11:1263622..1263627, +
9.37e-99FFCP PHASE2:Hg19::chr11:1249994..1249999,+#_f2d3308ecf3dfdd16e304473a9531cf3p30@MUC5B
9.37e-99FFCP PHASE2:Hg19::chr20:31611454..31611461,+#_f2d3308ecf3dfdd16e304473a9531cf3p8@BPIFB6
9.37e-99FFCP PHASE1:Hg19::chr19:14662395..14662414,+#_f2d3308ecf3dfdd16e304473a9531cf3p@chr19:14662395..14662414, +
9.37e-99FFCP PHASE2:Hg19::chr7:25361115..25361117,+#_f2d3308ecf3dfdd16e304473a9531cf3p@chr7:25361115..25361117, +
9.37e-99FFCP PHASE1:Hg19::chr11:1249994..1249999,+#_f2d3308ecf3dfdd16e304473a9531cf3p30@MUC5B
9.37e-99FFCP PHASE2:Hg19::chr6:168095835..168095838,-#_f2d3308ecf3dfdd16e304473a9531cf3p@chr6:168095835..168095838, -
2.55e-98FFCP PHASE1:Hg19::chr10:135337234..135337244,-#_e8dce077d4adc4df76f9d151216087cdp@chr10:135337234..135337244, -
2.55e-98FFCP PHASE2:Hg19::chr4:8437851..8437881,+#_e8dce077d4adc4df76f9d151216087cdp6@METTL19
2.55e-98FFCP PHASE1:Hg19::chr16:70602961..70602972,+#_e8dce077d4adc4df76f9d151216087cdp@chr16:70602961..70602972, +
2.55e-98FFCP PHASE1:Hg19::chr11:1263382..1263385,+#_e8dce077d4adc4df76f9d151216087cdp@chr11:1263382..1263385, +
2.55e-98FFCP PHASE1:Hg19::chr11:1260725..1260734,+#_e8dce077d4adc4df76f9d151216087cdp@chr11:1260725..1260734, +
2.55e-98FFCP PHASE1:Hg19::chr20:36694529..36694537,+#_e8dce077d4adc4df76f9d151216087cdp30@RPRD1B
2.55e-98FFCP PHASE1:Hg19::chr12:52478564..52478569,+#_e8dce077d4adc4df76f9d151216087cdp@chr12:52478564..52478569, +
2.55e-98FFCP PHASE1:Hg19::chr4:8437851..8437881,+#_e8dce077d4adc4df76f9d151216087cdp6@METTL19
2.55e-98FFCP PHASE2:Hg19::chr10:135337234..135337244,-#_e8dce077d4adc4df76f9d151216087cdp@chr10:135337234..135337244, -
2.55e-98FFCP PHASE2:Hg19::chr16:70602961..70602972,+#_e8dce077d4adc4df76f9d151216087cdp@chr16:70602961..70602972, +
2.55e-98FFCP PHASE2:Hg19::chr11:1263382..1263385,+#_e8dce077d4adc4df76f9d151216087cdp@chr11:1263382..1263385, +
2.55e-98FFCP PHASE2:Hg19::chr12:52478564..52478569,+#_e8dce077d4adc4df76f9d151216087cdp@chr12:52478564..52478569, +
2.55e-98FFCP PHASE2:Hg19::chr20:36694529..36694537,+#_e8dce077d4adc4df76f9d151216087cdp30@RPRD1B
2.55e-98FFCP PHASE2:Hg19::chr11:1260725..1260734,+#_e8dce077d4adc4df76f9d151216087cdp@chr11:1260725..1260734, +
1.23e-66FFCP PHASE1:Hg19::chr12:52478546..52478552,+#_352a61c4fb79a4b9694d56b285e8ad4bp@chr12:52478546..52478552, +
1.23e-66FFCP PHASE2:Hg19::chr1:157567826..157567835,-#_352a61c4fb79a4b9694d56b285e8ad4bp2@FCRL4
1.23e-66FFCP PHASE2:Hg19::chr12:52478546..52478552,+#_352a61c4fb79a4b9694d56b285e8ad4bp@chr12:52478546..52478552, +
1.23e-66FFCP PHASE1:Hg19::chr1:157567826..157567835,-#_352a61c4fb79a4b9694d56b285e8ad4bp2@FCRL4
2.39e-66FFCP PHASE1:Hg19::chr13:107026326..107026335,-#_33305bf993690d21578d93e8722b5d2dp@chr13:107026326..107026335, -
2.39e-66FFCP PHASE2:Hg19::chr20:31612754..31612763,+#_33305bf993690d21578d93e8722b5d2dp@chr20:31612754..31612763, +
2.39e-66FFCP PHASE1:Hg19::chr20:62321640..62321645,+#_33305bf993690d21578d93e8722b5d2dp1@BC131817
2.39e-66FFCP PHASE2:Hg19::chr19:36640447..36640459,+#_33305bf993690d21578d93e8722b5d2dp@chr19:36640447..36640459, +
2.39e-66FFCP PHASE1:Hg19::chr20:31612754..31612763,+#_33305bf993690d21578d93e8722b5d2dp@chr20:31612754..31612763, +
2.39e-66FFCP PHASE1:Hg19::chr19:36640447..36640459,+#_33305bf993690d21578d93e8722b5d2dp@chr19:36640447..36640459, +
2.39e-66FFCP PHASE2:Hg19::chr11:1265985..1265990,+#_33305bf993690d21578d93e8722b5d2dp@chr11:1265985..1265990, +
2.39e-66FFCP PHASE2:Hg19::chr14:103560509..103560517,+#_33305bf993690d21578d93e8722b5d2dp@chr14:103560509..103560517, +
2.39e-66FFCP PHASE2:Hg19::chr20:62321640..62321645,+#_33305bf993690d21578d93e8722b5d2dp1@BC131817
2.39e-66FFCP PHASE1:Hg19::chr14:103560509..103560517,+#_33305bf993690d21578d93e8722b5d2dp@chr14:103560509..103560517, +
2.39e-66FFCP PHASE2:Hg19::chr13:107026326..107026335,-#_33305bf993690d21578d93e8722b5d2dp@chr13:107026326..107026335, -
2.39e-66FFCP PHASE1:Hg19::chr11:1265985..1265990,+#_33305bf993690d21578d93e8722b5d2dp@chr11:1265985..1265990, +
4.66e-66FFCP PHASE1:Hg19::chr6:30954084..30954093,-#_f9b77bc4d1c874689379273820f6965bp@chr6:30954084..30954093, -
4.66e-66FFCP PHASE1:Hg19::chr19:51530837..51530842,-#_f9b77bc4d1c874689379273820f6965bp10@KLK11
4.66e-66FFCP PHASE2:Hg19::chr3:187957646..187957656,+#_f9b77bc4d1c874689379273820f6965bp43@LPP
4.66e-66FFCP PHASE2:Hg19::chr18:29006845..29006854,-#_f9b77bc4d1c874689379273820f6965bp@chr18:29006845..29006854, -
4.66e-66FFCP PHASE1:Hg19::chr18:49921251..49921263,+#_f9b77bc4d1c874689379273820f6965bp@chr18:49921251..49921263, +
4.66e-66FFCP PHASE2:Hg19::chr3:187957664..187957675,+#_f9b77bc4d1c874689379273820f6965bp58@LPP
4.66e-66FFCP PHASE2:Hg19::chr1:152382640..152382645,+#_f9b77bc4d1c874689379273820f6965bp@chr1:152382640..152382645, +
4.66e-66FFCP PHASE1:Hg19::chr3:124535316..124535340,+#_f9b77bc4d1c874689379273820f6965bp@chr3:124535316..124535340, +
4.66e-66FFCP PHASE1:Hg19::chr12:53673418..53673427,+#_f9b77bc4d1c874689379273820f6965bp9@ESPL1
4.66e-66FFCP PHASE2:Hg19::chr11:1283367..1283377,+#_f9b77bc4d1c874689379273820f6965bp@chr11:1283367..1283377, +
4.66e-66FFCP PHASE1:Hg19::chr3:187957646..187957656,+#_f9b77bc4d1c874689379273820f6965bp43@LPP
4.66e-66FFCP PHASE2:Hg19::chr19:51530837..51530842,-#_f9b77bc4d1c874689379273820f6965bp10@KLK11
4.66e-66FFCP PHASE2:Hg19::chr16:69418649..69418659,-#_f9b77bc4d1c874689379273820f6965bp@chr16:69418649..69418659, -
4.66e-66FFCP PHASE1:Hg19::chr18:29006845..29006854,-#_f9b77bc4d1c874689379273820f6965bp@chr18:29006845..29006854, -
4.66e-66FFCP PHASE2:Hg19::chr6:30954084..30954093,-#_f9b77bc4d1c874689379273820f6965bp@chr6:30954084..30954093, -
4.66e-66FFCP PHASE1:Hg19::chr1:152382640..152382645,+#_f9b77bc4d1c874689379273820f6965bp@chr1:152382640..152382645, +
4.66e-66FFCP PHASE1:Hg19::chr3:187957664..187957675,+#_f9b77bc4d1c874689379273820f6965bp58@LPP
4.66e-66FFCP PHASE1:Hg19::chr11:1283367..1283377,+#_f9b77bc4d1c874689379273820f6965bp@chr11:1283367..1283377, +
4.66e-66FFCP PHASE2:Hg19::chr18:49921251..49921263,+#_f9b77bc4d1c874689379273820f6965bp@chr18:49921251..49921263, +
4.66e-66FFCP PHASE2:Hg19::chr12:53673418..53673427,+#_f9b77bc4d1c874689379273820f6965bp9@ESPL1
4.66e-66FFCP PHASE2:Hg19::chr3:124535316..124535340,+#_f9b77bc4d1c874689379273820f6965bp@chr3:124535316..124535340, +
4.66e-66FFCP PHASE1:Hg19::chr16:69418649..69418659,-#_f9b77bc4d1c874689379273820f6965bp@chr16:69418649..69418659, -
1.46e-50FFCP PHASE1:Hg19::chr20:36694117..36694150,+#_42a021e75fd68faeafe8e7424f3b5137p24@RPRD1B
1.46e-50FFCP PHASE1:Hg19::chr2:40136465..40136469,+#_42a021e75fd68faeafe8e7424f3b5137p@chr2:40136465..40136469, +
1.46e-50FFCP PHASE2:Hg19::chr4:185197096..185197107,-#_42a021e75fd68faeafe8e7424f3b5137p@chr4:185197096..185197107, -
1.46e-50FFCP PHASE1:Hg19::chr5:66194621..66194633,+#_42a021e75fd68faeafe8e7424f3b5137p@chr5:66194621..66194633, +
1.46e-50FFCP PHASE1:Hg19::chr19:51531241..51531252,-#_42a021e75fd68faeafe8e7424f3b5137p9@KLK11
1.46e-50FFCP PHASE2:Hg19::chr8:101661845..101661855,-#_42a021e75fd68faeafe8e7424f3b5137p3@SNX31
1.46e-50FFCP PHASE1:Hg19::chr4:185197096..185197107,-#_42a021e75fd68faeafe8e7424f3b5137p@chr4:185197096..185197107, -
1.46e-50FFCP PHASE2:Hg19::chr14:106237005..106237028,+#_42a021e75fd68faeafe8e7424f3b5137p@chr14:106237005..106237028, +
1.46e-50FFCP PHASE2:Hg19::chr11:1262797..1262805,+#_42a021e75fd68faeafe8e7424f3b5137p@chr11:1262797..1262805, +
1.46e-50FFCP PHASE1:Hg19::chr8:101661845..101661855,-#_42a021e75fd68faeafe8e7424f3b5137p3@SNX31
1.46e-50FFCP PHASE2:Hg19::chr19:51531241..51531252,-#_42a021e75fd68faeafe8e7424f3b5137p9@KLK11
1.46e-50FFCP PHASE2:Hg19::chr20:36694117..36694150,+#_42a021e75fd68faeafe8e7424f3b5137p24@RPRD1B
1.46e-50FFCP PHASE1:Hg19::chr14:106237005..106237028,+#_42a021e75fd68faeafe8e7424f3b5137p@chr14:106237005..106237028, +
1.46e-50FFCP PHASE2:Hg19::chr5:66194621..66194633,+#_42a021e75fd68faeafe8e7424f3b5137p@chr5:66194621..66194633, +
1.46e-50FFCP PHASE2:Hg19::chr2:40136465..40136469,+#_42a021e75fd68faeafe8e7424f3b5137p@chr2:40136465..40136469, +
1.46e-50FFCP PHASE1:Hg19::chr11:1262797..1262805,+#_42a021e75fd68faeafe8e7424f3b5137p@chr11:1262797..1262805, +
2.42e-50FFCP PHASE1:Hg19::chr16:1128638..1128639,-#_17ed8bc32520abe453b0f875d17d1500p2@LOC146336
2.42e-50FFCP PHASE2:Hg19::chr11:1262959..1262968,-#_17ed8bc32520abe453b0f875d17d1500p@chr11:1262959..1262968, -
2.42e-50FFCP PHASE2:Hg19::chr14:106845840..106845851,-#_17ed8bc32520abe453b0f875d17d1500p1@IGHV3-35
2.42e-50FFCP PHASE2:Hg19::chr19:51563263..51563273,+#_17ed8bc32520abe453b0f875d17d1500p@chr19:51563263..51563273, +

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