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{{UBERON
{{UBERON
|id=UBERON:0001690
|alt_id=UBERON:FMA_52780-FMA_78500-MA_0000236-MIAA_0000138-XAO_0000189-ZFA_0001138
|name=ear
|anatomical_img_id=FMA:52780
|namespace=
|def="Sense organ in vertebrates that is specialized for the detection of sound, and the maintenance of balance. Includes the outer ear and middle ear, which collect and transmit sound waves; and the inner ear, which contains the organs of balance and (except in fish) hearing. Also includes the pinna, the visible part of the outer ear, present in some mammals." [GO:0042471, Wikipedia:Ear]
|xref=AAO:0011014;;BTO:0000368;;EFO:0000826;;EHDAA:502;;EHDAA2:0000423;;EMAPA:16193;;EV:0100353;;FMA:52780;;GAID:62;;galen:Ear;;MA:0000236;;MAT:0000138;;MESH:A.01.456.313;;MIAA:0000138;;ncithesaurus:Ear;;NIF_GrossAnatomy:birnlex_1062;;OpenCyc:Mx4rvViXS5wpEbGdrcN5Y29ycA;;OpenCyc:Mx4rvVjL05wpEbGdrcN5Y29ycA;;SCTID:1910005;;VHOG:0000330;;XAO:0000189
|is_a=UBERON:0000020
|synonym="auditory apparatus" RELATED [];;"auris" RELATED [BTO:0000368]
|comment=This class was created automatically from a combination of ontologies
|comment=This class was created automatically from a combination of ontologies
|alt_id=UBERON:FMA_52780-FMA_78500-MA_0000236-MIAA_0000138-XAO_0000189-ZFA_0001138
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Sense organ in vertebrates that is specialized for the detection of sound, and the maintenance of balance. Includes the outer ear and middle ear, which collect and transmit sound waves; and the inner ear, which contains the organs of balance and (except in fish) hearing. Also includes the pinna, the visible part of the outer ear, present in some mammals." [GO:0042471, Wikipedia:Ear]
|subset=organ_slim;;uberon_slim
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0001690
|is_a=UBERON:0000020 ;;UBERON:0010314
|is_obsolete=
|located_in=
|located_in=
|name=ear
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000033;;UBERON:0002105
|part_of=UBERON:0000033;;UBERON:0002105
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=organ_slim;;uberon_slim
|synonym="auditory apparatus" RELATED [];;"auris" RELATED [BTO:0000368]
|union_of=
|xref=AAO:0011014;;BTO:0000368;;EFO:0000826;;EHDAA2:0000423;;EHDAA:502;;EMAPA:16193;;EV:0100353;;FMA:52780;;GAID:62;;galen:Ear;;http://upload.wikimedia.org/wikipedia/commons/b/b8/Ear.jpg;;MA:0000236;;MAT:0000138;;MESH:A.01.456.313;;MIAA:0000138;;ncithesaurus:Ear;;NIF_GrossAnatomy:birnlex_1062;;OpenCyc:Mx4rvViXS5wpEbGdrcN5Y29ycA;;OpenCyc:Mx4rvVjL05wpEbGdrcN5Y29ycA;;SCTID:1910005;;VHOG:0000330;;XAO:0000189
}}
}}

Latest revision as of 17:19, 12 September 2014

Name:ear
Namespace:FANTOM
Definition:"Sense organ in vertebrates that is specialized for the detection of sound, and the maintenance of balance. Includes the outer ear and middle ear, which collect and transmit sound waves; and the inner ear, which contains the organs of balance and (except in fish) hearing. Also includes the pinna, the visible part of the outer ear, present in some mammals." [GO:0042471, Wikipedia:Ear]
Xrefs:
links:

AAO:0011014
BTO:0000368
EFO:0000826
EHDAA2:0000423
EHDAA:502
EMAPA:16193
EV:0100353
FMA:52780
GAID:62
galen:Ear
[1]
MA:0000236
MAT:0000138
MESH:A.01.456.313
MIAA:0000138
ncithesaurus:Ear
NIF_GrossAnatomy:birnlex_1062
OpenCyc:Mx4rvViXS5wpEbGdrcN5Y29ycA
OpenCyc:Mx4rvVjL05wpEbGdrcN5Y29ycA
SCTID:1910005
VHOG:0000330

XAO:0000189
Synonyms: "auditory apparatus" RELATED []
"auris" RELATED [BTO:0000368]
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:FMA_52780-FMA_78500-MA_0000236-MIAA_0000138-XAO_0000189-ZFA_0001138
Subset: organ_slim
uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000020(sense organ),UBERON:0010314(structure with developmental contribution from neural crest)
part_of:UBERON:0000033(head),UBERON:0002105(vestibulo-auditory system)



Children

part of:UBERON:0001846 (internal ear),UBERON:0003069 (otic placode),UBERON:0015807 (ear epithelium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Mouse (Mus musculus)

  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
  • 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
  • 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
  • 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001690 (ear), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE2:Mm9::chr11:8405038..8405048,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr11:8405038..8405048, -
1.87e-86FFCP PHASE2:Mm9::chr7:109265277..109265288,-#_1d13cb136fd2abf98a4e0d45469142ffp4@Chrna10
1.87e-86FFCP PHASE1:Mm9::chr12:13508046..13508055,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr12:13508046..13508055, +
1.87e-86FFCP PHASE2:Mm9::chr19:21028739..21028785,-#_1d13cb136fd2abf98a4e0d45469142ffp1@Tmc1
1.87e-86FFCP PHASE1:Mm9::chr14:47293496..47293510,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr14:47293496..47293510, -
1.87e-86FFCP PHASE2:Mm9::chr2:9811162..9811171,-#_1d13cb136fd2abf98a4e0d45469142ffp2@9230102O04Rik
1.87e-86FFCP PHASE1:Mm9::chr13:37195838..37195870,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr13:37195838..37195870, -
1.87e-86FFCP PHASE2:Mm9::chr14:102297728..102297742,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr14:102297728..102297742, +
1.87e-86FFCP PHASE1:Mm9::chr9:50968647..50968668,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr9:50968647..50968668, -
1.87e-86FFCP PHASE1:Mm9::chr8:13414266..13414279,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr8:13414266..13414279, +
1.87e-86FFCP PHASE1:Mm9::chr10:107349309..107349318,-#_1d13cb136fd2abf98a4e0d45469142ffp4@Otogl
1.87e-86FFCP PHASE1:Mm9::chr13:78257454..78257465,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr13:78257454..78257465, +
1.87e-86FFCP PHASE2:Mm9::chr15:89215306..89215315,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr15:89215306..89215315, +
1.87e-86FFCP PHASE2:Mm9::chr7:109052262..109052291,-#_1d13cb136fd2abf98a4e0d45469142ffp1@Tomt
1.87e-86FFCP PHASE2:Mm9::chr5:30710403..30710406,-#_1d13cb136fd2abf98a4e0d45469142ffp10@Otof
1.87e-86FFCP PHASE1:Mm9::chr14:20649897..20649907,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr14:20649897..20649907, +
1.87e-86FFCP PHASE1:Mm9::chr18:81327205..81327211,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr18:81327205..81327211, +
1.87e-86FFCP PHASE2:Mm9::chr17:31335953..31335957,-#_1d13cb136fd2abf98a4e0d45469142ffp3@Tmprss3
1.87e-86FFCP PHASE1:Mm9::chr11:11599532..11599539,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr11:11599532..11599539, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207792..42207805,-#_1d13cb136fd2abf98a4e0d45469142ffp11@Tecta
1.87e-86FFCP PHASE2:Mm9::chr12:109905399..109905416,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr12:109905399..109905416, +
1.87e-86FFCP PHASE1:Mm9::chr3:31585340..31585360,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr3:31585340..31585360, +
1.87e-86FFCP PHASE2:Mm9::chr4:101908153..101908163,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr4:101908153..101908163, +
1.87e-86FFCP PHASE2:Mm9::chr16:93971357..93971363,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr16:93971357..93971363, -
1.87e-86FFCP PHASE1:Mm9::chr8:94180607..94180619,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr8:94180607..94180619, -
1.87e-86FFCP PHASE1:Mm9::chr2:170417150..170417155,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr2:170417150..170417155, -
1.87e-86FFCP PHASE1:Mm9::chr4:115556989..115556997,+#_1d13cb136fd2abf98a4e0d45469142ffp1@Kncn
1.87e-86FFCP PHASE1:Mm9::chr18:59222033..59222043,+#_1d13cb136fd2abf98a4e0d45469142ffp7@A730017C20Rik
1.87e-86FFCP PHASE2:Mm9::chr8:13414289..13414295,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr8:13414289..13414295, +
1.87e-86FFCP PHASE2:Mm9::chr9:66860888..66860899,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr9:66860888..66860899, +
1.87e-86FFCP PHASE2:Mm9::chr2:53464178..53464186,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr2:53464178..53464186, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207792..42207805,-#_1d13cb136fd2abf98a4e0d45469142ffp11@Tecta
1.87e-86FFCP PHASE1:Mm9::chr2:73232344..73232356,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr2:73232344..73232356, -
1.87e-86FFCP PHASE1:Mm9::chr1:93218682..93218691,+#_1d13cb136fd2abf98a4e0d45469142ffp2@Espnl
1.87e-86FFCP PHASE1:Mm9::chr7:88068153..88068160,-#_1d13cb136fd2abf98a4e0d45469142ffp10@Sec11a
1.87e-86FFCP PHASE1:Mm9::chr15:65641741..65641748,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr15:65641741..65641748, +
1.87e-86FFCP PHASE2:Mm9::chr13:76964459..76964469,+#_1d13cb136fd2abf98a4e0d45469142ffp15@Mctp1
1.87e-86FFCP PHASE1:Mm9::chr2:14685072..14685084,+#_1d13cb136fd2abf98a4e0d45469142ffp41@Cacnb2
1.87e-86FFCP PHASE1:Mm9::chr5:21371424..21371435,-#_1d13cb136fd2abf98a4e0d45469142ffp2@Slc26a5
1.87e-86FFCP PHASE2:Mm9::chr10:97109753..97109764,+#_1d13cb136fd2abf98a4e0d45469142ffp3@Epyc
1.87e-86FFCP PHASE2:Mm9::chr2:121206677..121206683,-#_1d13cb136fd2abf98a4e0d45469142ffp3@Strc
1.87e-86FFCP PHASE1:Mm9::chr6:30619378..30619412,-#_1d13cb136fd2abf98a4e0d45469142ffp11@Tsga14
1.87e-86FFCP PHASE2:Mm9::chr6:113251570..113251578,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr6:113251570..113251578, +
1.87e-86FFCP PHASE2:Mm9::chr3:154459184..154459195,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr3:154459184..154459195, +
1.87e-86FFCP PHASE2:Mm9::chr2:67011941..67011951,+#_1d13cb136fd2abf98a4e0d45469142ffp3@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr9:42207983..42207995,-#_1d13cb136fd2abf98a4e0d45469142ffp3@Tecta
1.87e-86FFCP PHASE1:Mm9::chr5:144115382..144115389,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr5:144115382..144115389, +
1.87e-86FFCP PHASE2:Mm9::chr2:73232344..73232356,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr2:73232344..73232356, -
1.87e-86FFCP PHASE2:Mm9::chr1:172843885..172843890,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr1:172843885..172843890, -
1.87e-86FFCP PHASE1:Mm9::chr7:139597684..139597691,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr7:139597684..139597691, +
1.87e-86FFCP PHASE1:Mm9::chr19:21028739..21028785,-#_1d13cb136fd2abf98a4e0d45469142ffp1@Tmc1
1.87e-86FFCP PHASE1:Mm9::chr17:13983179..13983190,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr17:13983179..13983190, +
1.87e-86FFCP PHASE2:Mm9::chr1:60561636..60561645,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr1:60561636..60561645, -
1.87e-86FFCP PHASE1:Mm9::chr15:89215333..89215341,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr15:89215333..89215341, +
1.87e-86FFCP PHASE2:Mm9::chr7:133957514..133957529,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr7:133957514..133957529, +
1.87e-86FFCP PHASE1:Mm9::chr1:172843813..172843834,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr1:172843813..172843834, -
1.87e-86FFCP PHASE2:Mm9::chr10:107349378..107349390,-#_1d13cb136fd2abf98a4e0d45469142ffp1@Otogl
1.87e-86FFCP PHASE1:Mm9::chr5:72652660..72652667,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr5:72652660..72652667, +
1.87e-86FFCP PHASE1:Mm9::chr16:93971367..93971379,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr16:93971367..93971379, -
1.87e-86FFCP PHASE2:Mm9::chr17:13983198..13983203,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr17:13983198..13983203, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207983..42207995,-#_1d13cb136fd2abf98a4e0d45469142ffp3@Tecta
1.87e-86FFCP PHASE1:Mm9::chr7:53496326..53496340,+#_1d13cb136fd2abf98a4e0d45469142ffp1@Otog
1.87e-86FFCP PHASE1:Mm9::chr11:114603036..114603048,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr11:114603036..114603048, +
1.87e-86FFCP PHASE2:Mm9::chr13:43699188..43699216,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr13:43699188..43699216, +
1.87e-86FFCP PHASE2:Mm9::chr9:42207375..42207384,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr9:42207375..42207384, -
1.87e-86FFCP PHASE2:Mm9::chr19:55256373..55256384,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr19:55256373..55256384, +
1.87e-86FFCP PHASE1:Mm9::chr2:121206667..121206674,-#_1d13cb136fd2abf98a4e0d45469142ffp2@Strc
1.87e-86FFCP PHASE1:Mm9::chr3:154459231..154459240,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr3:154459231..154459240, +
1.87e-86FFCP PHASE1:Mm9::chr11:4689837..4689845,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr11:4689837..4689845, -
1.87e-86FFCP PHASE2:Mm9::chr13:78322370..78322376,-#_1d13cb136fd2abf98a4e0d45469142ffp4@uc007rhb.1
1.87e-86FFCP PHASE2:Mm9::chr1:182528371..182528385,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr1:182528371..182528385, +
1.87e-86FFCP PHASE2:Mm9::chr7:141605556..141605563,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr7:141605556..141605563, -
1.87e-86FFCP PHASE1:Mm9::chr1:154246932..154246939,+#_1d13cb136fd2abf98a4e0d45469142ffp7@Glt25d2
1.87e-86FFCP PHASE1:Mm9::chr14:102297747..102297765,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr14:102297747..102297765, +
1.87e-86FFCP PHASE2:Mm9::chr5:144115382..144115389,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr5:144115382..144115389, +
1.87e-86FFCP PHASE1:Mm9::chr5:30710455..30710464,-#_1d13cb136fd2abf98a4e0d45469142ffp9@Otof
1.87e-86FFCP PHASE2:Mm9::chr13:58283583..58283607,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr13:58283583..58283607, -
1.87e-86FFCP PHASE1:Mm9::chr9:42207375..42207384,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr9:42207375..42207384, -
1.87e-86FFCP PHASE1:Mm9::chr2:67011956..67011967,+#_1d13cb136fd2abf98a4e0d45469142ffp1@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr1:93235253..93235264,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr1:93235253..93235264, +
1.87e-86FFCP PHASE2:Mm9::chr11:4689837..4689845,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr11:4689837..4689845, -
1.87e-86FFCP PHASE2:Mm9::chr8:94180607..94180619,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr8:94180607..94180619, -
1.87e-86FFCP PHASE1:Mm9::chr17:31335953..31335957,-#_1d13cb136fd2abf98a4e0d45469142ffp3@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr15:65641741..65641748,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr15:65641741..65641748, +
1.87e-86FFCP PHASE2:Mm9::chr7:139597684..139597691,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr7:139597684..139597691, +
1.87e-86FFCP PHASE2:Mm9::chr2:14685072..14685084,+#_1d13cb136fd2abf98a4e0d45469142ffp41@Cacnb2
1.87e-86FFCP PHASE1:Mm9::chr2:136942131..136942142,-#_1d13cb136fd2abf98a4e0d45469142ffp6@Jag1
1.87e-86FFCP PHASE1:Mm9::chr12:13572961..13572974,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr12:13572961..13572974, +
1.87e-86FFCP PHASE1:Mm9::chr18:38104702..38104718,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr18:38104702..38104718, -
1.87e-86FFCP PHASE2:Mm9::chr17:27252925..27252939,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr17:27252925..27252939, +
1.87e-86FFCP PHASE1:Mm9::chr7:141605556..141605563,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr7:141605556..141605563, -
1.87e-86FFCP PHASE1:Mm9::chr1:194818647..194818660,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr1:194818647..194818660, -
1.87e-86FFCP PHASE2:Mm9::chr12:13572961..13572974,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr12:13572961..13572974, +
1.87e-86FFCP PHASE1:Mm9::chr19:22767090..22767099,+#_1d13cb136fd2abf98a4e0d45469142ffp18@Trpm3
1.87e-86FFCP PHASE2:Mm9::chr14:102297747..102297765,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr14:102297747..102297765, +
1.87e-86FFCP PHASE2:Mm9::chr11:94371127..94371139,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr11:94371127..94371139, -
1.87e-86FFCP PHASE1:Mm9::chr8:13414289..13414295,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr8:13414289..13414295, +
1.87e-86FFCP PHASE1:Mm9::chr10:107349378..107349390,-#_1d13cb136fd2abf98a4e0d45469142ffp1@Otogl
1.87e-86FFCP PHASE1:Mm9::chr19:55255206..55255223,+#_1d13cb136fd2abf98a4e0d45469142ffp1@Tectb
1.87e-86FFCP PHASE1:Mm9::chr13:78257491..78257498,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr13:78257491..78257498, +

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