UBERON:0001638: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0001638
|name=vein
|namespace=
|def="Any of the tubular branching vessels that carry blood from the capillaries toward the heart." [Wikipedia:Vein]
|x...") |
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{{UBERON | {{UBERON | ||
| | |alt_id=UBERON:FMA_50723-MA_0000066-MA_0000067-MIAA_0000037-XAO_0000115-ZFA_0000082 | ||
|anatomical_img_id=FMA:50723 | |||
| | |||
|comment=TODO - check with MA - vein vs venous blood vessel | |comment=TODO - check with MA - vein vs venous blood vessel | ||
|created_by= | |created_by= | ||
| | |def="Any of the tubular branching vessels that carry blood from the capillaries toward the heart." [Wikipedia:Vein] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0001638 | |||
|is_a=UBERON:0003920 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=vein | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon | |preceded_by= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Part of the circulatory system composed of blood vessels which carry blood from other organs, tissues, and cells to the heart.[AAO]" xsd:string | |||
|subset=uberon_slim;;vertebrate_core | |||
|synonym="vena" RELATED LATIN [Wikipedia:Vein];;"venous subtree" BROAD [];;"venous tree organ part" EXACT [];;"venous vessel" BROAD [] | |||
|union_of= | |||
|xref=AAO:0010212;;AEO:0000209;;BTO:0000234;;EFO:0000816;;EHDAA2:0003254;;EV:0100031;;FMA:50723;;GAID:492;;galen:Vein;;http://upload.wikimedia.org/wikipedia/commons/c/c2/Venous_system_en.svg;;http://upload.wikimedia.org/wikipedia/commons/thumb/c/c2/Venous_system_en.svg/200px-Venous_system_en.svg.png;;MA:0000067;;MAT:0000037;;MESH:A.07.231.908;;MIAA:0000037;;ncithesaurus:Vein;;OpenCyc:Mx4rvVjkWpwpEbGdrcN5Y29ycA;;SCTID:181367001;;TAO:0000082;;VHOG:0001252;;XAO:0000115;;ZFA:0000082 | |||
}} | }} | ||
Latest revision as of 17:19, 12 September 2014
| Name: | vein | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Any of the tubular branching vessels that carry blood from the capillaries toward the heart." [Wikipedia:Vein] | ||
| Xrefs: |
| ||
| Synonyms: |
"vena" RELATED LATIN [Wikipedia:Vein] "venous subtree" BROAD [] "venous tree organ part" EXACT [] "venous vessel" BROAD [] | ||
| Comments: | TODO - check with MA - vein vs venous blood vessel | ||
| Alt_id: | UBERON:FMA_50723-MA_0000066-MA_0000067-MIAA_0000037-XAO_0000115-ZFA_0000082 | ||
| Subset: |
uberon_slim vertebrate_core |
200px-Venous_system_en.svg.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0003920(venous blood vessel) |
|---|
Children
| is a: | UBERON:0002066 (umbilical vein) |
|---|---|
| derives from: | FF:0010191 (human vein - adult sample) |
| part of: | CL:0002543 (vein endothelial cell) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10191-103E2 (vein, adult)
- 11243-116E1 (Endothelial Cells - Umbilical vein, donor1)
- 11267-116G7 (Endothelial Cells - Vein, donor1)
- 11324-117E1 (Endothelial Cells - Umbilical vein, donor2)
- 11344-117G3 (Endothelial Cells - Vein, donor2)
- 11400-118D5 (Endothelial Cells - Umbilical vein, donor3)
- 11416-118F3 (Endothelial Cells - Vein, donor3)
- 11541-120B2 (Smooth Muscle Cells - Umbilical Vein, donor1)
- 11621-122B1 (Smooth Muscle Cells - Umbilical Vein, donor2)
- 11702-123B1 (Smooth Muscle Cells - Umbilical Vein, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001638 (vein), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 4.63e-79 | FFCP PHASE1:Hg19::chr19:7861475..7861491,+#_bcd1311704e3091c09c9d9d8acfdcdf5 | p@chr19:7861475..7861491, + |
| 4.63e-79 | FFCP PHASE2:Hg19::chr19:7861475..7861491,+#_bcd1311704e3091c09c9d9d8acfdcdf5 | p@chr19:7861475..7861491, + |
| 3.75e-66 | FFCP PHASE1:Hg19::chr5:120649811..120649848,+#_17f60debf9833d7f2858950cbd33eb0d | p@chr5:120649811..120649848, + |
| 3.75e-66 | FFCP PHASE2:Hg19::chr5:120649811..120649848,+#_17f60debf9833d7f2858950cbd33eb0d | p@chr5:120649811..120649848, + |
| 5.48e-53 | FFCP PHASE1:Hg19::chr9:35754222..35754237,-#_e187acce7750ab70eefaac47665423c3 | p3@MSMP |
| 5.48e-53 | FFCP PHASE2:Hg19::chr9:35754222..35754237,-#_e187acce7750ab70eefaac47665423c3 | p3@MSMP |
| 6.77e-49 | FFCP PHASE1:Hg19::chr9:139563124..139563129,+#_bd77980559a9f9ba8187bf28ba3772d1 | p@chr9:139563124..139563129, + |
| 6.77e-49 | FFCP PHASE2:Hg19::chr9:139563124..139563129,+#_bd77980559a9f9ba8187bf28ba3772d1 | p@chr9:139563124..139563129, + |
| 8.62e-47 | FFCP PHASE1:Hg19::chr10:50153703..50153720,+#_8b8f03dd4ea8b2599500932a0a50fd7f | p7@WDFY4 |
| 8.62e-47 | FFCP PHASE2:Hg19::chr10:50153703..50153720,+#_8b8f03dd4ea8b2599500932a0a50fd7f | p7@WDFY4 |
| 9.75e-45 | FFCP PHASE1:Hg19::chr1:78512168..78512171,-#_cc943d47d992ea63f07b2986456c32d5 | p@chr1:78512168..78512171, - |
| 9.75e-45 | FFCP PHASE2:Hg19::chr1:78512168..78512171,-#_cc943d47d992ea63f07b2986456c32d5 | p@chr1:78512168..78512171, - |
| 3.18e-44 | FFCP PHASE1:Hg19::chr10:94590997..94591006,+#_5b1d0894c19f5bf3459a33a0a48417c7 | p11@EXOC6 |
| 3.18e-44 | FFCP PHASE2:Hg19::chr10:94590997..94591006,+#_5b1d0894c19f5bf3459a33a0a48417c7 | p11@EXOC6 |
| 4.77e-40 | FFCP PHASE1:Hg19::chr10:50153735..50153750,+#_ac5c5ed69d2fc3f781952d78e91462db | p6@WDFY4 |
| 4.77e-40 | FFCP PHASE2:Hg19::chr10:50153735..50153750,+#_ac5c5ed69d2fc3f781952d78e91462db | p6@WDFY4 |
| 1.49e-39 | FFCP PHASE1:Hg19::chr1:61415107..61415136,-#_c73416ef58468e859074d3c57875beb1 | p@chr1:61415107..61415136, - |
| 1.49e-39 | FFCP PHASE2:Hg19::chr1:61415107..61415136,-#_c73416ef58468e859074d3c57875beb1 | p@chr1:61415107..61415136, - |
| 2.39e-39 | FFCP PHASE1:Hg19::chr12:10794718..10794741,+#_9cca15159dc29f58b36d45059bece165 | p@chr12:10794718..10794741, + |
| 2.39e-39 | FFCP PHASE2:Hg19::chr12:10794718..10794741,+#_9cca15159dc29f58b36d45059bece165 | p@chr12:10794718..10794741, + |
| 3.02e-39 | FFCP PHASE1:Hg19::chr10:82173423..82173439,+#_e081e5954bc0f33889508b1e37cd5fac | p5@FAM213A |
| 3.02e-39 | FFCP PHASE2:Hg19::chr10:82173423..82173439,+#_e081e5954bc0f33889508b1e37cd5fac | p5@FAM213A |
| 3.51e-38 | FFCP PHASE1:Hg19::chr7:139741594..139741615,-#_b46bb77cb303c757513ab8e9c9ab9b7b | p5@PARP12 |
| 3.51e-38 | FFCP PHASE2:Hg19::chr7:139741594..139741615,-#_b46bb77cb303c757513ab8e9c9ab9b7b | p5@PARP12 |
| 1.04e-37 | FFCP PHASE2:Hg19::chr12:12491541..12491552,-#_2e45a5e07a5cfc69bfca0caf7914ef5c | p11@MANSC1 |
| 1.04e-37 | FFCP PHASE1:Hg19::chr12:12491541..12491552,-#_2e45a5e07a5cfc69bfca0caf7914ef5c | p11@MANSC1 |
| 1.43e-37 | FFCP PHASE1:Hg19::chr9:139559213..139559241,+#_01b4ac5fb303348deb7bf6192bc28b3f | p5@EGFL7 |
| 1.43e-37 | FFCP PHASE2:Hg19::chr9:139559213..139559241,+#_01b4ac5fb303348deb7bf6192bc28b3f | p5@EGFL7 |
| 6.69e-36 | FFCP PHASE1:Hg19::chr1:172926077..172926120,-#_14ebb54bfa515ba852a42b87096098f6 | p@chr1:172926077..172926120, - |
| 6.69e-36 | FFCP PHASE2:Hg19::chr1:172926077..172926120,-#_14ebb54bfa515ba852a42b87096098f6 | p@chr1:172926077..172926120, - |
| 9.57e-36 | FFCP PHASE1:Hg19::chr6:11607864..11607875,+#_3ce49b3e81af73d743f7b24b1e021f0d | p@chr6:11607864..11607875, + |
| 9.57e-36 | FFCP PHASE2:Hg19::chr6:11607864..11607875,+#_3ce49b3e81af73d743f7b24b1e021f0d | p@chr6:11607864..11607875, + |
| 3.67e-35 | FFCP PHASE1:Hg19::chr7:106720036..106720059,-#_da2101c1804f7a0fd41b6e781e5c90b4 | p@chr7:106720036..106720059, - |
| 3.67e-35 | FFCP PHASE2:Hg19::chr7:106720036..106720059,-#_da2101c1804f7a0fd41b6e781e5c90b4 | p@chr7:106720036..106720059, - |
| 1.05e-34 | FFCP PHASE1:Hg19::chr6:78171774..78171792,+#_3098f66b699753ca0ec9ba27c2f54cb2 | p@chr6:78171774..78171792, + |
| 1.05e-34 | FFCP PHASE2:Hg19::chr6:78171774..78171792,+#_3098f66b699753ca0ec9ba27c2f54cb2 | p@chr6:78171774..78171792, + |
| 8.87e-34 | FFCP PHASE1:Hg19::chr10:94590950..94590955,+#_99eae0546c4467804812b8bb0f5965ec | p13@EXOC6 |
| 8.87e-34 | FFCP PHASE2:Hg19::chr10:94590950..94590955,+#_99eae0546c4467804812b8bb0f5965ec | p13@EXOC6 |
| 8.87e-34 | FFCP PHASE1:Hg19::chr1:78510648..78510661,+#_99eae0546c4467804812b8bb0f5965ec | p7@GIPC2 |
| 8.87e-34 | FFCP PHASE2:Hg19::chr1:78510648..78510661,+#_99eae0546c4467804812b8bb0f5965ec | p7@GIPC2 |
| 1.55e-33 | FFCP PHASE2:Hg19::chr12:118112251..118112272,-#_f2d72e494705b33b86d0815653ce82a8 | p12@KSR2 |
| 1.55e-33 | FFCP PHASE1:Hg19::chr2:72789511..72789554,-#_f2d72e494705b33b86d0815653ce82a8 | p@chr2:72789511..72789554, - |
| 1.55e-33 | FFCP PHASE2:Hg19::chr2:72789511..72789554,-#_f2d72e494705b33b86d0815653ce82a8 | p@chr2:72789511..72789554, - |
| 1.55e-33 | FFCP PHASE1:Hg19::chr12:118112251..118112272,-#_f2d72e494705b33b86d0815653ce82a8 | p12@KSR2 |
| 1.73e-33 | FFCP PHASE1:Hg19::chr12:105962745..105962748,+#_617e81524438d9aad8eea72214de69a3 | p@chr12:105962745..105962748, + |
| 1.73e-33 | FFCP PHASE2:Hg19::chr12:105962745..105962748,+#_617e81524438d9aad8eea72214de69a3 | p@chr12:105962745..105962748, + |
| 3.04e-33 | FFCP PHASE2:Hg19::chr3:43538305..43538325,-#_6402eb1dfe8f2a428fbfe860932e912d | p@chr3:43538305..43538325, - |
| 3.04e-33 | FFCP PHASE1:Hg19::chr3:43538305..43538325,-#_6402eb1dfe8f2a428fbfe860932e912d | p@chr3:43538305..43538325, - |
| 2.06e-32 | FFCP PHASE1:Hg19::chr1:186946611..186946622,+#_e43403b23a9f7ceaaf0c3073b4a1eb1c | p@chr1:186946611..186946622, + |
| 2.06e-32 | FFCP PHASE2:Hg19::chr1:186946611..186946622,+#_e43403b23a9f7ceaaf0c3073b4a1eb1c | p@chr1:186946611..186946622, + |
| 2.62e-32 | FFCP PHASE1:Hg19::chr7:139741849..139741879,-#_4db1f3c247233752a0f9f50b56cdea6c | p12@PARP12 |
| 2.62e-32 | FFCP PHASE2:Hg19::chr7:139741849..139741879,-#_4db1f3c247233752a0f9f50b56cdea6c | p12@PARP12 |
| 4.23e-31 | FFCP PHASE1:Hg19::chr6:78171746..78171769,+#_c8a152d050bbdec96449b8091adf9c7d | p@chr6:78171746..78171769, + |
| 4.23e-31 | FFCP PHASE2:Hg19::chr6:78171746..78171769,+#_c8a152d050bbdec96449b8091adf9c7d | p@chr6:78171746..78171769, + |
| 4.39e-31 | FFCP PHASE1:Hg19::chr1:22264210..22264241,+#_12ea5f3428a0abf5a3461ebccd90e3b5 | p@chr1:22264210..22264241, + |
| 4.39e-31 | FFCP PHASE2:Hg19::chr1:22264210..22264241,+#_12ea5f3428a0abf5a3461ebccd90e3b5 | p@chr1:22264210..22264241, + |
| 7.0e-31 | FFCP PHASE1:Hg19::chr18:22932208..22932219,-#_0f60d8d294585fe1a21fb2d1607af098 | p6@ZNF521 |
| 7.0e-31 | FFCP PHASE2:Hg19::chr18:22932208..22932219,-#_0f60d8d294585fe1a21fb2d1607af098 | p6@ZNF521 |
| 3.09e-30 | FFCP PHASE1:Hg19::chr4:162563953..162563962,-#_f8641936d7a38b2ae8d65d64ac7560d2 | p@chr4:162563953..162563962, - |
| 3.09e-30 | FFCP PHASE2:Hg19::chr4:162563953..162563962,-#_f8641936d7a38b2ae8d65d64ac7560d2 | p@chr4:162563953..162563962, - |
| 7.85e-30 | FFCP PHASE1:Hg19::chr5:71853090..71853107,+#_27f5a2bd012987dc130e6a3b0b8e963b | p@chr5:71853090..71853107, + |
| 7.85e-30 | FFCP PHASE2:Hg19::chr5:71853090..71853107,+#_27f5a2bd012987dc130e6a3b0b8e963b | p@chr5:71853090..71853107, + |
| 8.25e-30 | FFCP PHASE1:Hg19::chr22:50331023..50331030,+#_23b076c9b04496d89eeefab0cf5584f4 | p@chr22:50331023..50331030, + |
| 8.25e-30 | FFCP PHASE2:Hg19::chr22:50331023..50331030,+#_23b076c9b04496d89eeefab0cf5584f4 | p@chr22:50331023..50331030, + |
| 1.15e-29 | FFCP PHASE2:Hg19::chr12:105863627..105863633,+#_0ef46d7f8031022fc5ee2e198ebdb94b | p@chr12:105863627..105863633, + |
| 1.15e-29 | FFCP PHASE1:Hg19::chr12:105863627..105863633,+#_0ef46d7f8031022fc5ee2e198ebdb94b | p@chr12:105863627..105863633, + |
| 1.66e-29 | FFCP PHASE1:Hg19::chr10:99655692..99655725,-#_0ded93e5813293beda1f0e335e403cb2 | p@chr10:99655692..99655725, - |
| 1.66e-29 | FFCP PHASE2:Hg19::chr10:99655692..99655725,-#_0ded93e5813293beda1f0e335e403cb2 | p@chr10:99655692..99655725, - |
| 3.22e-29 | FFCP PHASE1:Hg19::chr13:75941109..75941132,-#_4446d94f1e9e6c803ee5275d554db915 | p@chr13:75941109..75941132, - |
| 3.22e-29 | FFCP PHASE2:Hg19::chr13:75941109..75941132,-#_4446d94f1e9e6c803ee5275d554db915 | p@chr13:75941109..75941132, - |
| 6.2e-29 | FFCP PHASE2:Hg19::chr1:78511901..78511912,+#_a54412825ef9ddbccc483381e06f99e7 | p6@GIPC2 |
| 6.2e-29 | FFCP PHASE1:Hg19::chr1:78511901..78511912,+#_a54412825ef9ddbccc483381e06f99e7 | p6@GIPC2 |
| 7.5e-29 | FFCP PHASE1:Hg19::chr1:186946659..186946664,+#_5dcbad4aec1a3ba7a1198bb0b3274dcd | p@chr1:186946659..186946664, + |
| 7.5e-29 | FFCP PHASE2:Hg19::chr1:186946659..186946664,+#_5dcbad4aec1a3ba7a1198bb0b3274dcd | p@chr1:186946659..186946664, + |
| 7.78e-29 | FFCP PHASE1:Hg19::chr2:56216687..56216727,-#_bfb8107820d7fd6e7a60a19bea951503 | p1@MIR216A |
| 7.78e-29 | FFCP PHASE2:Hg19::chr2:56216687..56216727,-#_bfb8107820d7fd6e7a60a19bea951503 | p1@MIR216A |
| 9.25e-29 | FFCP PHASE1:Hg19::chr21:39869867..39869880,-#_ea134398f9a18e68430f7b0a73f22046 | p@chr21:39869867..39869880, - |
| 9.25e-29 | FFCP PHASE2:Hg19::chr21:39869867..39869880,-#_ea134398f9a18e68430f7b0a73f22046 | p@chr21:39869867..39869880, - |
| 9.98e-29 | FFCP PHASE2:Hg19::chr11:59875891..59875903,-#_bbe1b53251c88c7e73ebbadf41abffef | p@chr11:59875891..59875903, - |
| 9.98e-29 | FFCP PHASE1:Hg19::chr11:59875891..59875903,-#_bbe1b53251c88c7e73ebbadf41abffef | p@chr11:59875891..59875903, - |
| 3.37e-28 | FFCP PHASE1:Hg19::chr12:105863705..105863718,+#_d17208321a19d709fbfebe479b6431d2 | p@chr12:105863705..105863718, + |
| 3.37e-28 | FFCP PHASE2:Hg19::chr12:105863705..105863718,+#_d17208321a19d709fbfebe479b6431d2 | p@chr12:105863705..105863718, + |
| 4.57e-28 | FFCP PHASE1:Hg19::chr12:71031220..71031229,-#_d24a45218db606308922085a18d0e389 | p10@PTPRB |
| 4.57e-28 | FFCP PHASE2:Hg19::chr12:71031220..71031229,-#_d24a45218db606308922085a18d0e389 | p10@PTPRB |
| 4.79e-28 | FFCP PHASE1:Hg19::chr19:47220191..47220198,-#_ac7a9f3842ad6605430adfdebdae47f2 | p14@PRKD2 |
| 4.79e-28 | FFCP PHASE2:Hg19::chr19:47220191..47220198,-#_ac7a9f3842ad6605430adfdebdae47f2 | p14@PRKD2 |
| 1.4e-27 | FFCP PHASE1:Hg19::chr6:142622846..142622853,+#_4e03c3304d9742ed8f27fab07ba0315e | p12@GPR126 |
| 1.4e-27 | FFCP PHASE2:Hg19::chr6:142622846..142622853,+#_4e03c3304d9742ed8f27fab07ba0315e | p12@GPR126 |
| 2.78e-27 | FFCP PHASE1:Hg19::chr12:6232421..6232447,-#_9952470968cee421b2ff1bf9f7e7e374 | p8@VWF |
| 2.78e-27 | FFCP PHASE2:Hg19::chr12:6232421..6232447,-#_9952470968cee421b2ff1bf9f7e7e374 | p8@VWF |
| 6.96e-27 | FFCP PHASE1:Hg19::chr13:32838839..32838850,+#_d0cd9ee6f3d20e81097549ce3380ee4a | p20@FRY |
| 6.96e-27 | FFCP PHASE2:Hg19::chr13:32838839..32838850,+#_d0cd9ee6f3d20e81097549ce3380ee4a | p20@FRY |
| 1.14e-26 | FFCP PHASE1:Hg19::chr5:95920642..95920681,+#_db966f00dd5c36b7fc55f1d1524a55fd | p1@ENST00000513158 |
| 1.14e-26 | FFCP PHASE2:Hg19::chr5:95920642..95920681,+#_db966f00dd5c36b7fc55f1d1524a55fd | p1@ENST00000513158 |
| 1.47e-26 | FFCP PHASE1:Hg19::chr18:33046982..33046991,-#_14bcf57615ffc7a01272b9fd71ba9436 | p@chr18:33046982..33046991, - |
| 1.47e-26 | FFCP PHASE2:Hg19::chr18:33046982..33046991,-#_14bcf57615ffc7a01272b9fd71ba9436 | p@chr18:33046982..33046991, - |
| 1.93e-26 | FFCP PHASE2:Hg19::chr12:105863636..105863650,+#_956bf2d1590b0645d18ab7e85c9c149f | p@chr12:105863636..105863650, + |
| 1.93e-26 | FFCP PHASE1:Hg19::chr12:105863636..105863650,+#_956bf2d1590b0645d18ab7e85c9c149f | p@chr12:105863636..105863650, + |
| 6.75e-26 | FFCP PHASE1:Hg19::chr1:2485709..2485728,+#_a94c9b5b3a643967044ca5cc2950401c | p@chr1:2485709..2485728, + |
| 6.75e-26 | FFCP PHASE2:Hg19::chr1:2485709..2485728,+#_a94c9b5b3a643967044ca5cc2950401c | p@chr1:2485709..2485728, + |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Part of the circulatory system composed of blood vessels which carry blood from other organs, tissues, and cells to the heart.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
