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{{UBERON
{{UBERON
|id=UBERON:0001637
|name=artery
|namespace=
|def="An epithelial tube or tree of tibes that transports blood away from the heart[modified from AEO definition]." [AEO:JB]
|xref=AAO:0010211;;AEO:0000208;;BTO:0000573;;EFO:0000814;;EHDAA2:0000143;;EHDAA2:0003253;;EV:0100026;;FMA:50720;;GAID:468;;galen:Artery;;MA:0000064;;MAT:0000034;;MESH:A.07.231.114;;MIAA:0000034;;ncithesaurus:Artery;;OpenCyc:Mx4rvVjknZwpEbGdrcN5Y29ycA;;SCTID:362877004;;TAO:0000005;;VHOG:0001251;;XAO:0000114;;ZFA:0000005
|is_a=UBERON:0001981;;UBERON:0003509
|synonym="arterial subtree" EXACT [];;"arterial system" RELATED [];;"arterial tree organ part" EXACT [];;"arterial vessel" RELATED []
|comment=Note that in FMA an artery is a tree, whereas AEO/JB defines it as a tube. In fact, we use this class in a fairly generic fashion, to encompass both individual tubes and tube trees. In the future we may introduce more specific subclasses
|alt_id=UBERON:FMA_50720-MA_0000061-MA_0000064-MIAA_0000034-XAO_0000114-ZFA_0000005
|alt_id=UBERON:FMA_50720-MA_0000061-MA_0000064-MIAA_0000034-XAO_0000114-ZFA_0000005
|disjoint_from=
|anatomical_img_id=FMA:50720
|union_of=
|comment=Editor notes: Note that in FMA an artery is a tree, whereas AEO/JB defines it as a tube; FMA includes a separate class for what it calls the trunk. Classification in this ontology may currently (Jan 2012) represent a mix of both schemes, although we are gradually revising in the direction of the AEO scheme.
|created_by=
|created_by=
|obo_creation_date=
|def="An epithelial tube or tree of tibes that transports blood away from the heart[modified from AEO definition]." [AEO:JB]
|subset=uberon_slim;;vertebrate_core
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0001637
|is_a=UBERON:0003509
|is_obsolete=
|located_in=
|located_in=
|name=artery
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0004572
|part_of=UBERON:0004572
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|preceded_by=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Part of the circulatory system composed of blood vessels which carry oxygenated blood away from the heart to the rest of the body.[AAO]" xsd:string
|subset=uberon_slim;;vertebrate_core
|synonym="arterial subtree" EXACT [];;"arterial system" RELATED [];;"arterial tree organ part" EXACT [];;"arterial vessel" RELATED []
|union_of=
|xref=AAO:0010211;;AEO:0000208;;BTO:0000573;;EFO:0000814;;EHDAA2:0000143;;EHDAA2:0003253;;EV:0100026;;FMA:50720;;GAID:468;;galen:Artery;;MA:0000064;;MAT:0000034;;MESH:A.07.231.114;;MIAA:0000034;;ncithesaurus:Artery;;OpenCyc:Mx4rvVjknZwpEbGdrcN5Y29ycA;;SCTID:362877004;;TAO:0000005;;VHOG:0001251;;XAO:0000114;;ZFA:0000005
}}
}}

Latest revision as of 17:19, 12 September 2014

Name:artery
Namespace:FANTOM
Definition:"An epithelial tube or tree of tibes that transports blood away from the heart[modified from AEO definition]." [AEO:JB]
Xrefs:
links:

AAO:0010211
AEO:0000208
BTO:0000573
EFO:0000814
EHDAA2:0000143
EHDAA2:0003253
EV:0100026
FMA:50720
GAID:468
galen:Artery
MA:0000064
MAT:0000034
MESH:A.07.231.114
MIAA:0000034
ncithesaurus:Artery
OpenCyc:Mx4rvVjknZwpEbGdrcN5Y29ycA
SCTID:362877004
TAO:0000005
VHOG:0001251
XAO:0000114

ZFA:0000005
Synonyms: "arterial subtree" EXACT []
"arterial system" RELATED []
"arterial tree organ part" EXACT []
"arterial vessel" RELATED []
Comments:Editor notes: Note that in FMA an artery is a tree, whereas AEO/JB defines it as a tube; FMA includes a separate class for what it calls the trunk. Classification in this ontology may currently (Jan 2012) represent a mix of both schemes, although we are gradually revising in the direction of the AEO scheme.
Alt_id: UBERON:FMA_50720-MA_0000061-MA_0000064-MIAA_0000034-XAO_0000114-ZFA_0000005
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0003509(arterial blood vessel)
part_of:UBERON:0004572(arterial system)



Children

is a:UBERON:0001310 (umbilical artery),UBERON:0002012 (pulmonary artery),UBERON:0002061 (truncus arteriosus),UBERON:0002457 (intersomitic artery),UBERON:0003469 (respiratory system artery),UBERON:0004573 (systemic artery),UBERON:0005432 (aortic sac)
derives from:FF:0010190 (human artery - adult sample)
part of:UBERON:0000415 (artery wall),UBERON:0001917 (endothelium of artery),UBERON:0002111 (artery smooth muscle tissue),UBERON:0007240 (tunica adventitia of artery),CL:1000413 (endothelial cell of artery)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001637 (artery), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.46e-86FFCP PHASE2:Mm9::chr8:69221163..69221172,+#_360027999a78600878e42b010d76b1d2p6@Npy1r
1.46e-86FFCP PHASE1:Mm9::chr8:69221163..69221172,+#_360027999a78600878e42b010d76b1d2p6@Npy1r
6.62e-84FFCP PHASE1:Hg19::chr8:55370720..55370733,+#_010f2b6b2b7e5e241585da671a1ee040p2@SOX17
6.62e-84FFCP PHASE2:Hg19::chr8:55370720..55370733,+#_010f2b6b2b7e5e241585da671a1ee040p2@SOX17
5.83e-77FFCP PHASE2:Hg19::chr7:22629318..22629324,+#_f9c371c9fafc17e47ab6582db70ac3d5p1@ENST00000439823
5.83e-77FFCP PHASE1:Hg19::chr7:22629318..22629324,+#_f9c371c9fafc17e47ab6582db70ac3d5p1@ENST00000439823
6.68e-73FFCP PHASE1:Hg19::chr11:102668200..102668228,-#_818c26e30a072c3324d1ecde6c339965p4@MMP1
6.68e-73FFCP PHASE2:Hg19::chr11:102668200..102668228,-#_818c26e30a072c3324d1ecde6c339965p4@MMP1
9.34e-73FFCP PHASE1:Hg19::chr4:7846444..7846449,-#_5c4cccf8b4357b37ae4f2600b3e2220cp@chr4:7846444..7846449, -
9.34e-73FFCP PHASE2:Hg19::chr4:7846444..7846449,-#_5c4cccf8b4357b37ae4f2600b3e2220cp@chr4:7846444..7846449, -
1.67e-71FFCP PHASE1:Hg19::chr6:53359400..53359406,+#_96ea9bcad16457620b85169430f67c56p@chr6:53359400..53359406, +
1.67e-71FFCP PHASE2:Hg19::chr6:53359400..53359406,+#_96ea9bcad16457620b85169430f67c56p@chr6:53359400..53359406, +
8.51e-71FFCP PHASE2:Hg19::chr4:70653649..70653665,-#_1a086dcb0ed93830ae048c9aed4f7b4cp4@SULT1B1
8.51e-71FFCP PHASE1:Hg19::chr4:70653649..70653665,-#_1a086dcb0ed93830ae048c9aed4f7b4cp4@SULT1B1
1.15e-70FFCP PHASE1:Hg19::chr22:21138313..21138336,+#_aaed694fdad84b5dcb20a46e8ccb9782p@chr22:21138313..21138336, +
1.15e-70FFCP PHASE2:Hg19::chr22:21138313..21138336,+#_aaed694fdad84b5dcb20a46e8ccb9782p@chr22:21138313..21138336, +
1.58e-70FFCP PHASE2:Hg19::chr4:70653673..70653688,-#_6497710bed5a04a2896e9fedb4163ccdp3@SULT1B1
1.58e-70FFCP PHASE1:Hg19::chr4:70653673..70653688,-#_6497710bed5a04a2896e9fedb4163ccdp3@SULT1B1
2.66e-70FFCP PHASE1:Hg19::chr11:102667477..102667490,-#_389c86ad249a2ff3914d9b10939be29bp@chr11:102667477..102667490, -
2.66e-70FFCP PHASE2:Hg19::chr11:102667477..102667490,-#_389c86ad249a2ff3914d9b10939be29bp@chr11:102667477..102667490, -
7.36e-70FFCP PHASE2:Mm9::chr8:69221150..69221161,+#_6cdc0ef8f98ef329ae6e5063328db685p5@Npy1r
7.36e-70FFCP PHASE1:Mm9::chr8:69221150..69221161,+#_6cdc0ef8f98ef329ae6e5063328db685p5@Npy1r
9.2e-70FFCP PHASE2:Hg19::chr11:102661517..102661541,-#_c9b9f52b2f9980f6e2fe78d4b3759697p@chr11:102661517..102661541, -
9.2e-70FFCP PHASE1:Hg19::chr11:102661517..102661541,-#_c9b9f52b2f9980f6e2fe78d4b3759697p@chr11:102661517..102661541, -
2.47e-69FFCP PHASE2:Mm9::chr2:65009852..65009866,-#_404bf0f14a825cc649b0d9da5bdbf2a9p@chr2:65009852..65009866, -
2.47e-69FFCP PHASE1:Mm9::chr2:65009852..65009866,-#_404bf0f14a825cc649b0d9da5bdbf2a9p@chr2:65009852..65009866, -
3.23e-69FFCP PHASE2:Hg19::chr4:54931911..54931926,-#_a8ffcacecef160219d7db58b740819dcp@chr4:54931911..54931926, -
3.23e-69FFCP PHASE1:Hg19::chr4:54931911..54931926,-#_a8ffcacecef160219d7db58b740819dcp@chr4:54931911..54931926, -
9.21e-69FFCP PHASE1:Hg19::chr14:23236579..23236596,+#_9717c85525602b0304e2cc69db96a986p5@OXA1L
9.21e-69FFCP PHASE2:Hg19::chr14:23236579..23236596,+#_9717c85525602b0304e2cc69db96a986p5@OXA1L
1.74e-68FFCP PHASE2:Hg19::chr3:30334038..30334060,+#_20af31b9f368bd2a82d02586be558c54p@chr3:30334038..30334060, +
1.74e-68FFCP PHASE1:Hg19::chr3:30334038..30334060,+#_20af31b9f368bd2a82d02586be558c54p@chr3:30334038..30334060, +
3.58e-68FFCP PHASE2:Hg19::chr3:149258838..149258848,-#_c0988d707da50d7678a9280ddd72ab1cp24@WWTR1
3.58e-68FFCP PHASE1:Hg19::chr3:149258838..149258848,-#_c0988d707da50d7678a9280ddd72ab1cp24@WWTR1
1.03e-67FFCP PHASE1:Hg19::chr22:21138343..21138378,+#_2365adaa92ceef9d50533a7f243ed941p@chr22:21138343..21138378, +
1.03e-67FFCP PHASE2:Hg19::chr22:21138343..21138378,+#_2365adaa92ceef9d50533a7f243ed941p@chr22:21138343..21138378, +
2.74e-67FFCP PHASE2:Hg19::chr11:102668074..102668126,-#_b6d25e521466e0b7a30a45ebc46c349bp3@MMP1
2.74e-67FFCP PHASE1:Hg19::chr11:102668074..102668126,-#_b6d25e521466e0b7a30a45ebc46c349bp3@MMP1
1.26e-66FFCP PHASE2:Hg19::chr11:102668178..102668206,+#_e1ef3c46dee6ee741eabe58ee1af5ea3p@chr11:102668178..102668206, +
1.26e-66FFCP PHASE1:Hg19::chr11:102668178..102668206,+#_e1ef3c46dee6ee741eabe58ee1af5ea3p@chr11:102668178..102668206, +
4.64e-66FFCP PHASE1:Hg19::chr11:102668016..102668028,-#_b2b05d291848ca88b91b9e109f3e5550p5@MMP1
4.64e-66FFCP PHASE2:Hg19::chr11:102668016..102668028,-#_b2b05d291848ca88b91b9e109f3e5550p5@MMP1
2.83e-65FFCP PHASE1:Mm9::chr17:14827154..14827169,-#_c3702c882b15f4c294d26d6e7fc6a074p@chr17:14827154..14827169, -
2.83e-65FFCP PHASE2:Mm9::chr11:50416871..50416882,+#_c3702c882b15f4c294d26d6e7fc6a074p5@Adamts2
2.83e-65FFCP PHASE2:Mm9::chr8:69228447..69228492,+#_c3702c882b15f4c294d26d6e7fc6a074p@chr8:69228447..69228492, +
2.83e-65FFCP PHASE1:Mm9::chr17:14802633..14802637,-#_c3702c882b15f4c294d26d6e7fc6a074p@chr17:14802633..14802637, -
2.83e-65FFCP PHASE2:Mm9::chr2:178190171..178190178,+#_c3702c882b15f4c294d26d6e7fc6a074p@chr2:178190171..178190178, +
2.83e-65FFCP PHASE1:Mm9::chr11:50416871..50416882,+#_c3702c882b15f4c294d26d6e7fc6a074p5@Adamts2
2.83e-65FFCP PHASE1:Mm9::chr8:69228447..69228492,+#_c3702c882b15f4c294d26d6e7fc6a074p@chr8:69228447..69228492, +
2.83e-65FFCP PHASE2:Mm9::chrX:160839744..160839754,+#_c3702c882b15f4c294d26d6e7fc6a074p@chrX:160839744..160839754, +
2.83e-65FFCP PHASE1:Mm9::chr17:87574327..87574332,+#_c3702c882b15f4c294d26d6e7fc6a074p@chr17:87574327..87574332, +
2.83e-65FFCP PHASE2:Mm9::chr2:112043522..112043530,-#_c3702c882b15f4c294d26d6e7fc6a074p@chr2:112043522..112043530, -
2.83e-65FFCP PHASE1:Mm9::chr2:112043522..112043530,-#_c3702c882b15f4c294d26d6e7fc6a074p@chr2:112043522..112043530, -
2.83e-65FFCP PHASE2:Mm9::chr17:87574327..87574332,+#_c3702c882b15f4c294d26d6e7fc6a074p@chr17:87574327..87574332, +
2.83e-65FFCP PHASE1:Mm9::chrX:160839744..160839754,+#_c3702c882b15f4c294d26d6e7fc6a074p@chrX:160839744..160839754, +
2.83e-65FFCP PHASE2:Mm9::chr17:14827154..14827169,-#_c3702c882b15f4c294d26d6e7fc6a074p@chr17:14827154..14827169, -
2.83e-65FFCP PHASE1:Mm9::chr2:178190171..178190178,+#_c3702c882b15f4c294d26d6e7fc6a074p@chr2:178190171..178190178, +
2.83e-65FFCP PHASE2:Mm9::chr17:14802633..14802637,-#_c3702c882b15f4c294d26d6e7fc6a074p@chr17:14802633..14802637, -
1.11e-64FFCP PHASE1:Hg19::chr11:102668708..102668742,+#_01ef1d55436198753212b4161e3b579dp@chr11:102668708..102668742, +
1.11e-64FFCP PHASE2:Hg19::chr11:102668708..102668742,+#_01ef1d55436198753212b4161e3b579dp@chr11:102668708..102668742, +
9.18e-63FFCP PHASE1:Hg19::chr11:102662162..102662217,-#_48e7d93cc02ebb7960a3eae6e19fa0dfp@chr11:102662162..102662217, -
9.18e-63FFCP PHASE2:Hg19::chr11:102662162..102662217,-#_48e7d93cc02ebb7960a3eae6e19fa0dfp@chr11:102662162..102662217, -
1.65e-60FFCP PHASE2:Hg19::chr12:96830430..96830450,+#_fd5eb17ac0d2114a13ca192873e2688ep@chr12:96830430..96830450, +
1.65e-60FFCP PHASE1:Hg19::chr12:96830430..96830450,+#_fd5eb17ac0d2114a13ca192873e2688ep@chr12:96830430..96830450, +
6.48e-58FFCP PHASE2:Hg19::chr10:4823096..4823144,-#_f5666b5fdd8c3aab2c5fa4cb6dcd079cp@chr10:4823096..4823144, -
6.48e-58FFCP PHASE1:Hg19::chr10:4823096..4823144,-#_f5666b5fdd8c3aab2c5fa4cb6dcd079cp@chr10:4823096..4823144, -
3.35e-57FFCP PHASE1:Hg19::chr11:102661061..102661115,-#_1197d75925a1c2cd7cb7f7ea8d27251ap@chr11:102661061..102661115, -
3.35e-57FFCP PHASE2:Hg19::chr11:102661061..102661115,-#_1197d75925a1c2cd7cb7f7ea8d27251ap@chr11:102661061..102661115, -
1.03e-56FFCP PHASE2:Hg19::chr3:106484411..106484418,+#_c17dace4250fa2fd706be8335ad8b56dp@chr3:106484411..106484418, +
1.03e-56FFCP PHASE1:Hg19::chr3:106484411..106484418,+#_c17dace4250fa2fd706be8335ad8b56dp@chr3:106484411..106484418, +
6.26e-56FFCP PHASE2:Hg19::chr5:54281535..54281547,-#_eb98bfec5c881754743acc60fe60563bp2@ESM1
6.26e-56FFCP PHASE1:Hg19::chr5:54281535..54281547,-#_eb98bfec5c881754743acc60fe60563bp2@ESM1
1.54e-55FFCP PHASE2:Hg19::chr2:134548872..134548879,-#_9cf96854a4b07c04d87cfff6e56aa1fcp@chr2:134548872..134548879, -
1.54e-55FFCP PHASE1:Hg19::chr2:134548872..134548879,-#_9cf96854a4b07c04d87cfff6e56aa1fcp@chr2:134548872..134548879, -
3.85e-55FFCP PHASE2:Hg19::chr4:145567563..145567572,+#_af686683b3ebae5d67243758ddd2a90bp8@HHIP
3.85e-55FFCP PHASE1:Hg19::chr4:145567563..145567572,+#_af686683b3ebae5d67243758ddd2a90bp8@HHIP
4.21e-55FFCP PHASE2:Hg19::chr11:102663449..102663467,-#_7ddf9165f58b1cfca8ac873f62ce2354p@chr11:102663449..102663467, -
4.21e-55FFCP PHASE1:Hg19::chr11:102663449..102663467,-#_7ddf9165f58b1cfca8ac873f62ce2354p@chr11:102663449..102663467, -
7.65e-55FFCP PHASE2:Hg19::chr11:102667434..102667447,-#_3baa9c952b6d907c3793149f7c33bad1p@chr11:102667434..102667447, -
7.65e-55FFCP PHASE1:Hg19::chr11:102667434..102667447,-#_3baa9c952b6d907c3793149f7c33bad1p@chr11:102667434..102667447, -
2.37e-54FFCP PHASE1:Hg19::chr15:39544232..39544238,+#_a941e39547f75441c2a90f1ba9844257p@chr15:39544232..39544238, +
2.37e-54FFCP PHASE2:Hg19::chr15:39544232..39544238,+#_a941e39547f75441c2a90f1ba9844257p@chr15:39544232..39544238, +
7.57e-54FFCP PHASE1:Hg19::chr11:102667504..102667527,-#_097be48600a40107d3b3ac3eb5b0a224p@chr11:102667504..102667527, -
7.57e-54FFCP PHASE2:Hg19::chr11:102667504..102667527,-#_097be48600a40107d3b3ac3eb5b0a224p@chr11:102667504..102667527, -
1.03e-53FFCP PHASE2:Hg19::chr4:74703497..74703511,+#_ad2e13777532f5da126ed150cd3bbcf0p@chr4:74703497..74703511, +
1.03e-53FFCP PHASE1:Hg19::chr4:74703497..74703511,+#_ad2e13777532f5da126ed150cd3bbcf0p@chr4:74703497..74703511, +
1.19e-53FFCP PHASE2:Hg19::chr4:54931877..54931892,-#_450f303ddc89ca4a12c0c82cf0481a72p@chr4:54931877..54931892, -
1.19e-53FFCP PHASE1:Hg19::chr4:54931877..54931892,-#_450f303ddc89ca4a12c0c82cf0481a72p@chr4:54931877..54931892, -
2.25e-53FFCP PHASE2:Hg19::chr1:186946626..186946652,+#_d83c996e3e75f8d561a1517004448398p@chr1:186946626..186946652, +
2.25e-53FFCP PHASE1:Hg19::chr1:186946626..186946652,+#_d83c996e3e75f8d561a1517004448398p@chr1:186946626..186946652, +
4.23e-52FFCP PHASE2:Hg19::chr4:145567538..145567544,+#_65ac8d6eb6b962a9ac743a9e1bd2c4cbp13@HHIP
4.23e-52FFCP PHASE1:Hg19::chr4:145567538..145567544,+#_65ac8d6eb6b962a9ac743a9e1bd2c4cbp13@HHIP
6.05e-52FFCP PHASE1:Hg19::chr11:12182490..12182503,+#_b9debf258924771c526c9671a1b02156p8@MICAL2
6.05e-52FFCP PHASE2:Hg19::chr11:12182490..12182503,+#_b9debf258924771c526c9671a1b02156p8@MICAL2
5.22e-51FFCP PHASE1:Hg19::chr8:90556171..90556173,+#_07d50f10cb0de67c007ab1916ce59565p@chr8:90556171..90556173, +
5.22e-51FFCP PHASE2:Hg19::chr8:90556171..90556173,+#_07d50f10cb0de67c007ab1916ce59565p@chr8:90556171..90556173, +
9.34e-51FFCP PHASE1:Mm9::chr17:75578018..75578028,+#_e462a5a3c78f946a58e6957fe967f383p14@Ltbp1
9.34e-51FFCP PHASE2:Mm9::chr17:75578018..75578028,+#_e462a5a3c78f946a58e6957fe967f383p14@Ltbp1
1.21e-50FFCP PHASE1:Hg19::chr2:228735763..228735772,+#_bd6fd63d1edc938188ea3c63f81128e6p2@WDR69
1.21e-50FFCP PHASE2:Hg19::chr2:228735763..228735772,+#_bd6fd63d1edc938188ea3c63f81128e6p2@WDR69










Property "Property value" (as page type) with input value "UBPROP:0000001 "Part of the circulatory system composed of blood vessels which carry oxygenated blood away from the heart to the rest of the body.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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