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{{UBERON
{{UBERON
|id=UBERON:0001443
|alt_id=UBERON:FMA_24216-MA_0000031
|name=chest
|anatomical_img_id=FMA:24216
|namespace=
|def="Subdivision of trunk proper, which is demarcated from the neck by the plane of the superior thoracic aperture and from the abdomen internally by the inferior surface of the diaphragm and externally by the costal margin and associated with the thoracic vertebral column and ribcage and from the back of the thorax by the external surface of the posterolateral part of the rib cage, the anterior surface of the thoracic vertebral column and the posterior axillary lines; together with the abdomen and the perineum, it constitutes the trunk proper[FMA]." [FMA:9576, Wikipedia:Chest]
|xref=BTO:0001368;;EFO:0000965;;EV:0100010;;FMA:9576;;GAID:91;;galen:Chest;;galen:Thorax;;http://upload.wikimedia.org/wikipedia/commons/d/db/Chest.jpg;;http://upload.wikimedia.org/wikipedia/commons/thumb/d/db/Chest.jpg/200px-Chest.jpg;;MA:0000031;;MAT:0000295;;MESH:A.01.911;;MIAA:0000295;;ncithesaurus:Chest;;ncithesaurus:Thorax;;OpenCyc:Mx4rvVikFZwpEbGdrcN5Y29ycA
|is_a=UBERON:0009569
|synonym="anterior chest" EXACT [FMA:24816];;"anterior thoracic region" EXACT [];;"anterolateral part of thorax" EXACT [];;"front of chest" EXACT [FMA:24816];;"front of thorax" EXACT [];;"pectus" EXACT [FMA:24816, FMA:TA];;"thorax" RELATED [FMA:9576];;"thorax" RELATED LATIN [Wikipedia:Chest];;"ventral part of thoracic region" EXACT []
|comment=editor note - FMA:24216 present in FMA1, but gone in subsequent versions
|comment=editor note - FMA:24216 present in FMA1, but gone in subsequent versions
|alt_id=UBERON:FMA_24216-MA_0000031
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Subdivision of trunk proper, which is demarcated from the neck by the plane of the superior thoracic aperture and from the abdomen internally by the inferior surface of the diaphragm and externally by the costal margin and associated with the thoracic vertebral column and ribcage and from the back of the thorax by the external surface of the posterolateral part of the rib cage, the anterior surface of the thoracic vertebral column and the posterior axillary lines; together with the abdomen and the perineum, it constitutes the trunk proper[FMA]." [FMA:9576, Wikipedia:Chest]
|subset=uberon_slim
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0001443
|is_a=UBERON:0009569
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=chest
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000915
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;"spatially_disjoint_from" UBERON:0000916
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;"spatially_disjoint_from" UBERON:0000916
|is_obsolete=
|subset=uberon_slim
|preceded_by=
|synonym="anterior chest" EXACT [FMA:24816];;"anterior thoracic region" EXACT [];;"anterolateral part of thorax" EXACT [];;"front of chest" EXACT [FMA:24816];;"front of thorax" EXACT [];;"pectus" EXACT [FMA:24816, FMA:TA];;"thorax" RELATED [FMA:9576];;"thorax" RELATED LATIN [Wikipedia:Chest];;"ventral part of thoracic region" EXACT []
|union_of=
|xref=BTO:0001368;;EFO:0000965;;EV:0100010;;FMA:9576;;GAID:91;;galen:Chest;;galen:Thorax;;http://upload.wikimedia.org/wikipedia/commons/d/db/Chest.jpg;;http://upload.wikimedia.org/wikipedia/commons/thumb/d/db/Chest.jpg/200px-Chest.jpg;;MA:0000031;;MAT:0000295;;MESH:A.01.911;;MIAA:0000295;;ncithesaurus:Chest;;ncithesaurus:Thorax;;OpenCyc:Mx4rvVikFZwpEbGdrcN5Y29ycA
}}
}}

Latest revision as of 17:18, 12 September 2014

Name:chest
Namespace:FANTOM
Definition:"Subdivision of trunk proper, which is demarcated from the neck by the plane of the superior thoracic aperture and from the abdomen internally by the inferior surface of the diaphragm and externally by the costal margin and associated with the thoracic vertebral column and ribcage and from the back of the thorax by the external surface of the posterolateral part of the rib cage, the anterior surface of the thoracic vertebral column and the posterior axillary lines; together with the abdomen and the perineum, it constitutes the trunk proper[FMA]." [FMA:9576, Wikipedia:Chest]
Xrefs:
links:

BTO:0001368
EFO:0000965
EV:0100010
FMA:9576
GAID:91
galen:Chest
galen:Thorax
[1]
[2]
MA:0000031
MAT:0000295
MESH:A.01.911
MIAA:0000295
ncithesaurus:Chest
ncithesaurus:Thorax

OpenCyc:Mx4rvVikFZwpEbGdrcN5Y29ycA
Synonyms: "anterior chest" EXACT [FMA:24816]
"anterior thoracic region" EXACT []
"anterolateral part of thorax" EXACT []
"front of chest" EXACT [FMA:24816]
"front of thorax" EXACT []
"pectus" EXACT [FMA:24816, FMA:TA]
"thorax" RELATED [FMA:9576]
"thorax" RELATED LATIN [Wikipedia:Chest]
"ventral part of thoracic region" EXACT []
Comments:editor note - FMA:24216 present in FMA1, but gone in subsequent versions
Alt_id: UBERON:FMA_24216-MA_0000031
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0009569(subdivision of trunk)
part_of:UBERON:0000915(thoracic segment of trunk)



Children

part of:UBERON:0000310 (breast),UBERON:0002426 (chest muscle),UBERON:0005175 (chest organ)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001443 (chest), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
6.65e-72FFCP PHASE2:Hg19::chr17:74574500..74574512,-#_fb3e6838e91502a4acb72e2e80565e2dp@chr17:74574500..74574512, -
6.65e-72FFCP PHASE1:Hg19::chr17:74574500..74574512,-#_fb3e6838e91502a4acb72e2e80565e2dp@chr17:74574500..74574512, -
3.91e-58FFCP PHASE2:Mm9::chr17:67043365..67043374,-#_5c3efc2bb2e5910629a7c4f1868764bbp17@Ptprm
3.91e-58FFCP PHASE1:Mm9::chr17:67043365..67043374,-#_5c3efc2bb2e5910629a7c4f1868764bbp17@Ptprm
2.16e-54FFCP PHASE1:Hg19::chr10:8904309..8904317,+#_9512dfbdbf13040af2d59bc4cc093ab3p@chr10:8904309..8904317, +
2.16e-54FFCP PHASE2:Hg19::chr10:9012087..9012100,+#_9512dfbdbf13040af2d59bc4cc093ab3p1@ENST00000456526
2.16e-54FFCP PHASE2:Hg19::chr21:41755024..41755027,+#_9512dfbdbf13040af2d59bc4cc093ab3p2@DSCAM-AS1
2.16e-54FFCP PHASE1:Hg19::chr21:41755185..41755210,+#_9512dfbdbf13040af2d59bc4cc093ab3p1@DSCAM-AS1
2.16e-54FFCP PHASE1:Hg19::chr11:85539944..85539950,+#_9512dfbdbf13040af2d59bc4cc093ab3p@chr11:85539944..85539950, +
2.16e-54FFCP PHASE2:Hg19::chr10:19498568..19498573,+#_9512dfbdbf13040af2d59bc4cc093ab3p@chr10:19498568..19498573, +
2.16e-54FFCP PHASE1:Hg19::chr10:8910201..8910211,+#_9512dfbdbf13040af2d59bc4cc093ab3p@chr10:8910201..8910211, +
2.16e-54FFCP PHASE1:Hg19::chr9:83986187..83986191,-#_9512dfbdbf13040af2d59bc4cc093ab3p@chr9:83986187..83986191, -
2.16e-54FFCP PHASE1:Hg19::chr17:38843592..38843605,+#_9512dfbdbf13040af2d59bc4cc093ab3p@chr17:38843592..38843605, +
2.16e-54FFCP PHASE2:Hg19::chr21:41755185..41755210,+#_9512dfbdbf13040af2d59bc4cc093ab3p1@DSCAM-AS1
2.16e-54FFCP PHASE2:Hg19::chr11:85539944..85539950,+#_9512dfbdbf13040af2d59bc4cc093ab3p@chr11:85539944..85539950, +
2.16e-54FFCP PHASE1:Hg19::chr10:19498507..19498511,+#_9512dfbdbf13040af2d59bc4cc093ab3p@chr10:19498507..19498511, +
2.16e-54FFCP PHASE2:Hg19::chr10:19498407..19498415,+#_9512dfbdbf13040af2d59bc4cc093ab3p@chr10:19498407..19498415, +
2.16e-54FFCP PHASE1:Hg19::chr12:3324464..3324485,+#_9512dfbdbf13040af2d59bc4cc093ab3p4@TSPAN9
2.16e-54FFCP PHASE1:Hg19::chr21:41756567..41756583,-#_9512dfbdbf13040af2d59bc4cc093ab3p@chr21:41756567..41756583, -
2.16e-54FFCP PHASE2:Hg19::chr17:38843592..38843605,+#_9512dfbdbf13040af2d59bc4cc093ab3p@chr17:38843592..38843605, +
2.16e-54FFCP PHASE1:Hg19::chr10:9012087..9012100,+#_9512dfbdbf13040af2d59bc4cc093ab3p1@ENST00000456526
2.16e-54FFCP PHASE2:Hg19::chr12:3324464..3324485,+#_9512dfbdbf13040af2d59bc4cc093ab3p4@TSPAN9
2.16e-54FFCP PHASE2:Hg19::chr10:9012128..9012139,+#_9512dfbdbf13040af2d59bc4cc093ab3p2@ENST00000456526
2.16e-54FFCP PHASE2:Hg19::chr21:41756567..41756583,-#_9512dfbdbf13040af2d59bc4cc093ab3p@chr21:41756567..41756583, -
2.16e-54FFCP PHASE2:Hg19::chr9:83986187..83986191,-#_9512dfbdbf13040af2d59bc4cc093ab3p@chr9:83986187..83986191, -
2.16e-54FFCP PHASE1:Hg19::chr10:19498541..19498551,+#_9512dfbdbf13040af2d59bc4cc093ab3p@chr10:19498541..19498551, +
2.16e-54FFCP PHASE2:Hg19::chr10:8904309..8904317,+#_9512dfbdbf13040af2d59bc4cc093ab3p@chr10:8904309..8904317, +
2.16e-54FFCP PHASE1:Hg19::chr21:41711178..41711186,-#_9512dfbdbf13040af2d59bc4cc093ab3p@chr21:41711178..41711186, -
2.16e-54FFCP PHASE1:Hg19::chr10:19498568..19498573,+#_9512dfbdbf13040af2d59bc4cc093ab3p@chr10:19498568..19498573, +
2.16e-54FFCP PHASE2:Hg19::chr10:19498507..19498511,+#_9512dfbdbf13040af2d59bc4cc093ab3p@chr10:19498507..19498511, +
2.16e-54FFCP PHASE2:Hg19::chr10:8910201..8910211,+#_9512dfbdbf13040af2d59bc4cc093ab3p@chr10:8910201..8910211, +
2.16e-54FFCP PHASE2:Hg19::chr21:41711178..41711186,-#_9512dfbdbf13040af2d59bc4cc093ab3p@chr21:41711178..41711186, -
2.16e-54FFCP PHASE1:Hg19::chr10:9012128..9012139,+#_9512dfbdbf13040af2d59bc4cc093ab3p2@ENST00000456526
2.16e-54FFCP PHASE1:Hg19::chr10:19498407..19498415,+#_9512dfbdbf13040af2d59bc4cc093ab3p@chr10:19498407..19498415, +
2.16e-54FFCP PHASE1:Hg19::chr21:41755024..41755027,+#_9512dfbdbf13040af2d59bc4cc093ab3p2@DSCAM-AS1
2.16e-54FFCP PHASE2:Hg19::chr10:19498541..19498551,+#_9512dfbdbf13040af2d59bc4cc093ab3p@chr10:19498541..19498551, +
2.24e-48FFCP PHASE1:Hg19::chr3:129226514..129226531,+#_1c5f0fdaf9dea299dc5296e5ee2b5719p@chr3:129226514..129226531, +
2.24e-48FFCP PHASE2:Hg19::chr3:129226514..129226531,+#_1c5f0fdaf9dea299dc5296e5ee2b5719p@chr3:129226514..129226531, +
6.34e-47FFCP PHASE2:Mm9::chr6:14851605..14851614,+#_709dbebd8a04d9514bf671c9d6a845acp17@Foxp2
6.34e-47FFCP PHASE1:Mm9::chr6:14851605..14851614,+#_709dbebd8a04d9514bf671c9d6a845acp17@Foxp2
4.08e-45FFCP PHASE1:Hg19::chr19:18899082..18899091,+#_e9848b17ff69d7fcfb21207442c54abap@chr19:18899082..18899091, +
4.08e-45FFCP PHASE2:Hg19::chr19:18899082..18899091,+#_e9848b17ff69d7fcfb21207442c54abap@chr19:18899082..18899091, +
1.34e-41FFCP PHASE1:Hg19::chr1:240577171..240577181,-#_34790900f10228b306d7896af09439adp@chr1:240577171..240577181, -
1.34e-41FFCP PHASE2:Hg19::chr1:240577171..240577181,-#_34790900f10228b306d7896af09439adp@chr1:240577171..240577181, -
1.83e-41FFCP PHASE2:Hg19::chr2:11679852..11679866,+#_ec81add221dde6524b01bf6b52a13841p18@GREB1
1.83e-41FFCP PHASE1:Hg19::chr2:11679852..11679866,+#_ec81add221dde6524b01bf6b52a13841p18@GREB1
4.07e-41FFCP PHASE2:Hg19::chr17:59469536..59469541,+#_135b4c813336321e8b2df603921fd1f2p@chr17:59469536..59469541, +
4.07e-41FFCP PHASE1:Hg19::chr13:23733194..23733206,+#_135b4c813336321e8b2df603921fd1f2p@chr13:23733194..23733206, +
4.07e-41FFCP PHASE1:Hg19::chr20:52482691..52482707,-#_135b4c813336321e8b2df603921fd1f2p@chr20:52482691..52482707, -
4.07e-41FFCP PHASE2:Hg19::chr20:52482691..52482707,-#_135b4c813336321e8b2df603921fd1f2p@chr20:52482691..52482707, -
4.07e-41FFCP PHASE2:Hg19::chr13:23733194..23733206,+#_135b4c813336321e8b2df603921fd1f2p@chr13:23733194..23733206, +
4.07e-41FFCP PHASE1:Hg19::chr17:59469536..59469541,+#_135b4c813336321e8b2df603921fd1f2p@chr17:59469536..59469541, +
4.67e-41FFCP PHASE1:Hg19::chr5:177505250..177505293,-#_03707587578108419a0a859c9052ccc1p@chr5:177505250..177505293, -
4.67e-41FFCP PHASE2:Hg19::chr5:177505250..177505293,-#_03707587578108419a0a859c9052ccc1p@chr5:177505250..177505293, -
1.6e-37FFCP PHASE2:Hg19::chr15:81242191..81242201,+#_65da21d9d3ec1b54ba1c80012edf8d25p19@KIAA1199
1.6e-37FFCP PHASE1:Hg19::chr15:81242191..81242201,+#_65da21d9d3ec1b54ba1c80012edf8d25p19@KIAA1199
6.8e-37FFCP PHASE1:Hg19::chr1:96504230..96504238,-#_bea62546c05569064e83bbf44ae034c5p@chr1:96504230..96504238, -
6.8e-37FFCP PHASE1:Hg19::chr13:23583578..23583586,+#_bea62546c05569064e83bbf44ae034c5p@chr13:23583578..23583586, +
6.8e-37FFCP PHASE1:Hg19::chr10:19498455..19498482,+#_bea62546c05569064e83bbf44ae034c5p@chr10:19498455..19498482, +
6.8e-37FFCP PHASE2:Hg19::chr10:9012105..9012111,+#_bea62546c05569064e83bbf44ae034c5p3@ENST00000456526
6.8e-37FFCP PHASE2:Hg19::chr1:96504230..96504238,-#_bea62546c05569064e83bbf44ae034c5p@chr1:96504230..96504238, -
6.8e-37FFCP PHASE2:Hg19::chr13:23583578..23583586,+#_bea62546c05569064e83bbf44ae034c5p@chr13:23583578..23583586, +
6.8e-37FFCP PHASE2:Hg19::chr10:19498455..19498482,+#_bea62546c05569064e83bbf44ae034c5p@chr10:19498455..19498482, +
6.8e-37FFCP PHASE1:Hg19::chr19:15674459..15674486,+#_bea62546c05569064e83bbf44ae034c5p@chr19:15674459..15674486, +
6.8e-37FFCP PHASE1:Hg19::chr17:65990543..65990553,-#_bea62546c05569064e83bbf44ae034c5p@chr17:65990543..65990553, -
6.8e-37FFCP PHASE1:Hg19::chr10:9012105..9012111,+#_bea62546c05569064e83bbf44ae034c5p3@ENST00000456526
6.8e-37FFCP PHASE2:Hg19::chr19:15674459..15674486,+#_bea62546c05569064e83bbf44ae034c5p@chr19:15674459..15674486, +
6.8e-37FFCP PHASE2:Hg19::chr17:65990543..65990553,-#_bea62546c05569064e83bbf44ae034c5p@chr17:65990543..65990553, -
1.36e-36FFCP PHASE1:Hg19::chr3:129226494..129226510,+#_4be95240afeeae0b71eb0b8ebbb3f2a9p@chr3:129226494..129226510, +
1.36e-36FFCP PHASE2:Hg19::chr3:129226494..129226510,+#_4be95240afeeae0b71eb0b8ebbb3f2a9p@chr3:129226494..129226510, +
1.63e-36FFCP PHASE1:Hg19::chr14:38064198..38064200,-#_cd6d415036279bc3d1c030b7af5823e8p11@FOXA1
1.63e-36FFCP PHASE2:Hg19::chr14:38064198..38064200,-#_cd6d415036279bc3d1c030b7af5823e8p11@FOXA1
2.15e-36FFCP PHASE2:Hg19::chr7:134430175..134430178,+#_2b7f12239e2fd2f91b7356914488f34ap85@CALD1
2.15e-36FFCP PHASE1:Hg19::chr15:39486488..39486494,-#_2b7f12239e2fd2f91b7356914488f34ap6@ENST00000560743
2.15e-36FFCP PHASE1:Hg19::chr7:134430175..134430178,+#_2b7f12239e2fd2f91b7356914488f34ap85@CALD1
2.15e-36FFCP PHASE2:Hg19::chr15:39486488..39486494,-#_2b7f12239e2fd2f91b7356914488f34ap6@ENST00000560743
2.35e-36FFCP PHASE1:Hg19::chr11:72493920..72493932,-#_b1e8cc854055a7118226d3f315a42506p19@STARD10
2.35e-36FFCP PHASE2:Hg19::chr11:72493920..72493932,-#_b1e8cc854055a7118226d3f315a42506p19@STARD10
5.79e-35FFCP PHASE2:Mm9::chr11:85703335..85703350,+#_43049ecbe42fa2d6368b3da55d410185p4@Tbx4
5.79e-35FFCP PHASE1:Mm9::chr11:85703335..85703350,+#_43049ecbe42fa2d6368b3da55d410185p4@Tbx4
6.42e-35FFCP PHASE1:Hg19::chr7:73483140..73483149,+#_d6d1f9724a7139d3baddbd2545b4607dp31@ELN
6.42e-35FFCP PHASE2:Hg19::chr7:73483140..73483149,+#_d6d1f9724a7139d3baddbd2545b4607dp31@ELN
1.29e-34FFCP PHASE1:Hg19::chr19:18897380..18897392,+#_7151d6af6bda2dc9d023c4d1f54a3d55p@chr19:18897380..18897392, +
1.29e-34FFCP PHASE2:Hg19::chr19:18897380..18897392,+#_7151d6af6bda2dc9d023c4d1f54a3d55p@chr19:18897380..18897392, +
2.26e-33FFCP PHASE1:Mm9::chr11:85589157..85589190,-#_c752305db76f08e8276358a6a34fb630p1@ENSMUST00000134305
2.26e-33FFCP PHASE2:Mm9::chr11:85589157..85589190,-#_c752305db76f08e8276358a6a34fb630p1@ENSMUST00000134305
3.85e-33FFCP PHASE1:Hg19::chr8:91871545..91871568,-#_cd9bce50a5ae7331f94514774f2593f0p3@ENST00000517884
3.85e-33FFCP PHASE2:Hg19::chr8:91871545..91871568,-#_cd9bce50a5ae7331f94514774f2593f0p3@ENST00000517884
4.79e-33FFCP PHASE2:Hg19::chr3:161089631..161089635,+#_39161b8fae518d7385f45fead85b6baap@chr3:161089631..161089635, +
4.79e-33FFCP PHASE1:Hg19::chr19:18899427..18899432,-#_39161b8fae518d7385f45fead85b6baap@chr19:18899427..18899432, -
4.79e-33FFCP PHASE2:Hg19::chr11:66811898..66811900,-#_39161b8fae518d7385f45fead85b6baap@chr11:66811898..66811900, -
4.79e-33FFCP PHASE2:Hg19::chr19:18899427..18899432,-#_39161b8fae518d7385f45fead85b6baap@chr19:18899427..18899432, -
4.79e-33FFCP PHASE1:Hg19::chr11:66811898..66811900,-#_39161b8fae518d7385f45fead85b6baap@chr11:66811898..66811900, -
4.79e-33FFCP PHASE1:Hg19::chr3:161089631..161089635,+#_39161b8fae518d7385f45fead85b6baap@chr3:161089631..161089635, +
7.42e-33FFCP PHASE1:Hg19::chr15:88119982..88120003,+#_245c9841e32ddc2fcf9ce0371dc3dc6cp2@LINC00052
7.42e-33FFCP PHASE2:Hg19::chr15:88119982..88120003,+#_245c9841e32ddc2fcf9ce0371dc3dc6cp2@LINC00052
1.17e-32FFCP PHASE2:Hg19::chr10:8091813..8091823,+#_f8d94ee7d1fb11a8ef71dd106d41d552p@chr10:8091813..8091823, +
1.17e-32FFCP PHASE1:Hg19::chr10:8091813..8091823,+#_f8d94ee7d1fb11a8ef71dd106d41d552p@chr10:8091813..8091823, +
1.9e-32FFCP PHASE1:Hg19::chr19:18901737..18901749,-#_51dc4bdff9c985c71c1da2feddb77a48p7@COMP
1.9e-32FFCP PHASE2:Hg19::chr19:18901737..18901749,-#_51dc4bdff9c985c71c1da2feddb77a48p7@COMP

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