UBERON:0001389: Difference between revisions
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|is_obsolete= | |is_obsolete= | ||
|located_in= | |located_in= | ||
|name=soleus | |name=soleus muscle | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0001665 | |part_of=UBERON:0001665 | ||
Latest revision as of 17:17, 12 September 2014
| Name: | soleus muscle | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "a powerful muscle in the back part of the lower leg (the calf). It runs from just below the knee to the heel, and is involved in standing and walking. It is closely connected to the gastrocnemius muscle and some anatomists consider them to be a single muscle, the triceps surae. Its name is derived from the solefish whose shape it resembles. The soleus is located in the superficial posterior compartment of the leg. Not all mammals have a soleus muscle; one familiar species that lacks the soleus is the dog." [Wikipedia:Soleus_muscle] | ||
| Xrefs: |
| ||
| Synonyms: | "soleus muscle" RELATED [BTO:0001265] | ||
| Comments: | This class was created automatically from a combination of ontologies | ||
| Alt_id: | UBERON:FMA_22542-MA_0002424 | ||
| Subset: | uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0004256(hindlimb zeugopod muscle) |
|---|---|
| part_of: | UBERON:0001665(triceps surae) |
Children
| derives from: | FF:0011173 (human skeletal muscle - soleus muscle sample) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10282-104F3 (skeletal muscle - soleus muscle, donor1)
- 10310-104I4
- 10338-105C5
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001389 (soleus muscle), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.42e-195 | FFCP PHASE2:Hg19::chr22:25535147..25535150,+#_bd484e616af2dc8f18fa0b135f86849a | p@chr22:25535147..25535150, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr4:186423235..186423240,-#_bd484e616af2dc8f18fa0b135f86849a | p@chr4:186423235..186423240, - |
| 5.42e-195 | FFCP PHASE2:Hg19::chr4:85166508..85166512,+#_bd484e616af2dc8f18fa0b135f86849a | p@chr4:85166508..85166512, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr22:25535147..25535150,+#_bd484e616af2dc8f18fa0b135f86849a | p@chr22:25535147..25535150, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr7:128483294..128483304,+#_bd484e616af2dc8f18fa0b135f86849a | p@chr7:128483294..128483304, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr10:79759687..79759690,+#_bd484e616af2dc8f18fa0b135f86849a | p@chr10:79759687..79759690, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr2:179396370..179396375,-#_bd484e616af2dc8f18fa0b135f86849a | p@chr2:179396370..179396375, - |
| 5.42e-195 | FFCP PHASE2:Hg19::chr10:97176812..97176813,+#_bd484e616af2dc8f18fa0b135f86849a | p@chr10:97176812..97176813, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr2:179396370..179396375,-#_bd484e616af2dc8f18fa0b135f86849a | p@chr2:179396370..179396375, - |
| 5.42e-195 | FFCP PHASE2:Hg19::chr2:76859417..76859418,+#_bd484e616af2dc8f18fa0b135f86849a | p@chr2:76859417..76859418, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr11:3691037..3691040,+#_bd484e616af2dc8f18fa0b135f86849a | p@chr11:3691037..3691040, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr4:85166508..85166512,+#_bd484e616af2dc8f18fa0b135f86849a | p@chr4:85166508..85166512, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr7:128483294..128483304,+#_bd484e616af2dc8f18fa0b135f86849a | p@chr7:128483294..128483304, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr4:186423235..186423240,-#_bd484e616af2dc8f18fa0b135f86849a | p@chr4:186423235..186423240, - |
| 5.42e-195 | FFCP PHASE2:Hg19::chr10:79759687..79759690,+#_bd484e616af2dc8f18fa0b135f86849a | p@chr10:79759687..79759690, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr10:97176812..97176813,+#_bd484e616af2dc8f18fa0b135f86849a | p@chr10:97176812..97176813, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr2:76859417..76859418,+#_bd484e616af2dc8f18fa0b135f86849a | p@chr2:76859417..76859418, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr11:3691037..3691040,+#_bd484e616af2dc8f18fa0b135f86849a | p@chr11:3691037..3691040, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr5:137206180..137206187,+#_3803e4c4e0a7e6a8b9ac454f6220c3c0 | p@chr5:137206180..137206187, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr5:175125123..175125125,+#_3803e4c4e0a7e6a8b9ac454f6220c3c0 | p@chr5:175125123..175125125, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:152534468..152534476,-#_3803e4c4e0a7e6a8b9ac454f6220c3c0 | p@chr2:152534468..152534476, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:152534468..152534476,-#_3803e4c4e0a7e6a8b9ac454f6220c3c0 | p@chr2:152534468..152534476, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr1:119487319..119487331,-#_3803e4c4e0a7e6a8b9ac454f6220c3c0 | p@chr1:119487319..119487331, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr5:172318159..172318160,+#_3803e4c4e0a7e6a8b9ac454f6220c3c0 | p@chr5:172318159..172318160, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168106638..168106641,+#_3803e4c4e0a7e6a8b9ac454f6220c3c0 | p93@XIRP2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr13:114067922..114067931,-#_3803e4c4e0a7e6a8b9ac454f6220c3c0 | p@chr13:114067922..114067931, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr13:51335579..51335582,+#_3803e4c4e0a7e6a8b9ac454f6220c3c0 | p@chr13:51335579..51335582, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr3:188070178..188070183,+#_3803e4c4e0a7e6a8b9ac454f6220c3c0 | p@chr3:188070178..188070183, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr15:51060095..51060101,+#_3803e4c4e0a7e6a8b9ac454f6220c3c0 | p@chr15:51060095..51060101, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr1:119487319..119487331,-#_3803e4c4e0a7e6a8b9ac454f6220c3c0 | p@chr1:119487319..119487331, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:64069328..64069334,-#_3803e4c4e0a7e6a8b9ac454f6220c3c0 | p7@FLJ36848 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr6:33716557..33716600,-#_3803e4c4e0a7e6a8b9ac454f6220c3c0 | p@chr6:33716557..33716600, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168102721..168102729,+#_3803e4c4e0a7e6a8b9ac454f6220c3c0 | p77@XIRP2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr5:117747577..117747580,+#_3803e4c4e0a7e6a8b9ac454f6220c3c0 | p@chr5:117747577..117747580, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168106638..168106641,+#_3803e4c4e0a7e6a8b9ac454f6220c3c0 | p93@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168105362..168105368,+#_3803e4c4e0a7e6a8b9ac454f6220c3c0 | p46@XIRP2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr22:36000901..36000903,-#_3803e4c4e0a7e6a8b9ac454f6220c3c0 | p@chr22:36000901..36000903, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr5:175125123..175125125,+#_3803e4c4e0a7e6a8b9ac454f6220c3c0 | p@chr5:175125123..175125125, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168102721..168102729,+#_3803e4c4e0a7e6a8b9ac454f6220c3c0 | p77@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:179399371..179399376,-#_3803e4c4e0a7e6a8b9ac454f6220c3c0 | p@chr2:179399371..179399376, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr8:144542829..144542857,-#_3803e4c4e0a7e6a8b9ac454f6220c3c0 | p@chr8:144542829..144542857, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr22:36000901..36000903,-#_3803e4c4e0a7e6a8b9ac454f6220c3c0 | p@chr22:36000901..36000903, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168105362..168105368,+#_3803e4c4e0a7e6a8b9ac454f6220c3c0 | p46@XIRP2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:179399371..179399376,-#_3803e4c4e0a7e6a8b9ac454f6220c3c0 | p@chr2:179399371..179399376, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr7:66800928..66800936,+#_3803e4c4e0a7e6a8b9ac454f6220c3c0 | p1@ENST00000430244, p1@uc003tvu.2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr5:172318159..172318160,+#_3803e4c4e0a7e6a8b9ac454f6220c3c0 | p@chr5:172318159..172318160, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr15:51060095..51060101,+#_3803e4c4e0a7e6a8b9ac454f6220c3c0 | p@chr15:51060095..51060101, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:152525581..152525588,-#_3803e4c4e0a7e6a8b9ac454f6220c3c0 | p@chr2:152525581..152525588, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr5:137206180..137206187,+#_3803e4c4e0a7e6a8b9ac454f6220c3c0 | p@chr5:137206180..137206187, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168105987..168105994,+#_3803e4c4e0a7e6a8b9ac454f6220c3c0 | p54@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr1:145478051..145478060,-#_3803e4c4e0a7e6a8b9ac454f6220c3c0 | p@chr1:145478051..145478060, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:152525581..152525588,-#_3803e4c4e0a7e6a8b9ac454f6220c3c0 | p@chr2:152525581..152525588, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168104676..168104679,+#_3803e4c4e0a7e6a8b9ac454f6220c3c0 | p104@XIRP2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168105987..168105994,+#_3803e4c4e0a7e6a8b9ac454f6220c3c0 | p54@XIRP2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr13:51335579..51335582,+#_3803e4c4e0a7e6a8b9ac454f6220c3c0 | p@chr13:51335579..51335582, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr1:145478051..145478060,-#_3803e4c4e0a7e6a8b9ac454f6220c3c0 | p@chr1:145478051..145478060, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:152499727..152499734,-#_3803e4c4e0a7e6a8b9ac454f6220c3c0 | p@chr2:152499727..152499734, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:179514306..179514308,-#_3803e4c4e0a7e6a8b9ac454f6220c3c0 | p@chr2:179514306..179514308, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:168104926..168104927,+#_3803e4c4e0a7e6a8b9ac454f6220c3c0 | p108@XIRP2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168104676..168104679,+#_3803e4c4e0a7e6a8b9ac454f6220c3c0 | p104@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:152520248..152520253,-#_3803e4c4e0a7e6a8b9ac454f6220c3c0 | p@chr2:152520248..152520253, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:152499727..152499734,-#_3803e4c4e0a7e6a8b9ac454f6220c3c0 | p@chr2:152499727..152499734, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:179514306..179514308,-#_3803e4c4e0a7e6a8b9ac454f6220c3c0 | p@chr2:179514306..179514308, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr3:188070178..188070183,+#_3803e4c4e0a7e6a8b9ac454f6220c3c0 | p@chr3:188070178..188070183, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:64069328..64069334,-#_3803e4c4e0a7e6a8b9ac454f6220c3c0 | p7@FLJ36848 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr6:33716557..33716600,-#_3803e4c4e0a7e6a8b9ac454f6220c3c0 | p@chr6:33716557..33716600, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:152553958..152553964,-#_3803e4c4e0a7e6a8b9ac454f6220c3c0 | p@chr2:152553958..152553964, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr7:66800928..66800936,+#_3803e4c4e0a7e6a8b9ac454f6220c3c0 | p1@ENST00000430244, p1@uc003tvu.2 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:168104926..168104927,+#_3803e4c4e0a7e6a8b9ac454f6220c3c0 | p108@XIRP2 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr13:114067922..114067931,-#_3803e4c4e0a7e6a8b9ac454f6220c3c0 | p@chr13:114067922..114067931, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:152520248..152520253,-#_3803e4c4e0a7e6a8b9ac454f6220c3c0 | p@chr2:152520248..152520253, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr5:117747577..117747580,+#_3803e4c4e0a7e6a8b9ac454f6220c3c0 | p@chr5:117747577..117747580, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:152553958..152553964,-#_3803e4c4e0a7e6a8b9ac454f6220c3c0 | p@chr2:152553958..152553964, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr8:144542829..144542857,-#_3803e4c4e0a7e6a8b9ac454f6220c3c0 | p@chr8:144542829..144542857, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr12:102079632..102079647,-#_f594d6205b0638f30738120590e662b3 | p@chr12:102079632..102079647, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr2:168102459..168102468,+#_f594d6205b0638f30738120590e662b3 | p73@XIRP2 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr2:152566311..152566321,-#_f594d6205b0638f30738120590e662b3 | p@chr2:152566311..152566321, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr22:26299595..26299605,+#_f594d6205b0638f30738120590e662b3 | p@chr22:26299595..26299605, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr2:152566311..152566321,-#_f594d6205b0638f30738120590e662b3 | p@chr2:152566311..152566321, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr2:179656442..179656451,-#_f594d6205b0638f30738120590e662b3 | p@chr2:179656442..179656451, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr3:69168368..69168389,-#_f594d6205b0638f30738120590e662b3 | p@chr3:69168368..69168389, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr2:168102459..168102468,+#_f594d6205b0638f30738120590e662b3 | p73@XIRP2 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr22:26299595..26299605,+#_f594d6205b0638f30738120590e662b3 | p@chr22:26299595..26299605, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr10:97037060..97037066,-#_f594d6205b0638f30738120590e662b3 | p@chr10:97037060..97037066, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr5:95180155..95180172,+#_f594d6205b0638f30738120590e662b3 | p@chr5:95180155..95180172, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr21:47769234..47769239,+#_f594d6205b0638f30738120590e662b3 | p@chr21:47769234..47769239, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr3:35732964..35732965,+#_f594d6205b0638f30738120590e662b3 | p@chr3:35732964..35732965, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr2:29398214..29398229,+#_f594d6205b0638f30738120590e662b3 | p27@CLIP4 |
| 2.55e-98 | FFCP PHASE2:Hg19::chr2:152590465..152590472,-#_f594d6205b0638f30738120590e662b3 | p@chr2:152590465..152590472, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr21:47769234..47769239,+#_f594d6205b0638f30738120590e662b3 | p@chr21:47769234..47769239, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr10:29918007..29918031,-#_f594d6205b0638f30738120590e662b3 | p@chr10:29918007..29918031, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr2:152590465..152590472,-#_f594d6205b0638f30738120590e662b3 | p@chr2:152590465..152590472, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr3:46924232..46924241,+#_f594d6205b0638f30738120590e662b3 | p@chr3:46924232..46924241, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr6:125535391..125535409,+#_f594d6205b0638f30738120590e662b3 | p@chr6:125535391..125535409, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr2:179656442..179656451,-#_f594d6205b0638f30738120590e662b3 | p@chr2:179656442..179656451, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr3:69168368..69168389,-#_f594d6205b0638f30738120590e662b3 | p@chr3:69168368..69168389, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr12:69653866..69653876,+#_f594d6205b0638f30738120590e662b3 | p@chr12:69653866..69653876, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr12:122884464..122884467,-#_f594d6205b0638f30738120590e662b3 | p38@CLIP1 |
| 2.55e-98 | FFCP PHASE2:Hg19::chr10:29918007..29918031,-#_f594d6205b0638f30738120590e662b3 | p@chr10:29918007..29918031, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr5:95180155..95180172,+#_f594d6205b0638f30738120590e662b3 | p@chr5:95180155..95180172, + |
