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|is_obsolete=
|is_obsolete=
|located_in=
|located_in=
|name=appendix
|name=vermiform appendix
|namespace=
|namespace=FANTOM
|obo_creation_date=
|obo_creation_date=
|part_of=UBERON:0001153;;UBERON:0004907
|part_of=UBERON:0001153;;UBERON:0004907

Latest revision as of 17:16, 12 September 2014

Name:vermiform appendix
Namespace:FANTOM
Definition:"Organ with organ cavity which is continuous proximally with the cecum and distally terminates in the tip of the appendix[FMA]. a narrowed, thickened, lymphoid-rich caecal apex [Fisher 2000]." [FMA:14542, Wikipedia:Vermiform_appendix]
Xrefs:
links:

BTO:0000084
EFO:0000849
EHDAA2:0000588
EV:0100076
EV:0100080
FMA:14542
GAID:308
galen:AppendixVermiformis
[ Gray536.png Gray536.png]
[ 200px-Gray536.png 200px-Gray536.png]
MA:0001540
MAT:0000287
MESH:A.03.492.411.495.209.290
MIAA:0000287
ncithesaurus:Vermiform_Appendix
OpenCyc:Mx4rvVjGgJwpEbGdrcN5Y29ycA
SCTID:181255000

VHOG:0001306
Synonyms: "apex of cecum" RELATED []
"appendix vermiformis" EXACT [FMA:14542, FMA:TA]
"appendix vermiformis" RELATED LATIN [Wikipedia:Vermiform_appendix]
"caecal appendix" EXACT []
"vermiform appendix" EXACT []
"vermix" EXACT []
Alt_id: UBERON:FMA_14542-MA_0001540-MIAA_0000287
Subset: organ_slim
uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0013765(digestive system element)
develops_from:UBERON:0001045(midgut)
part_of:UBERON:0001153(caecum),UBERON:0004907(lower digestive tract)



Children

derives from:FF:0010189 (human appendix - adult sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001154 (vermiform appendix), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
9.37e-99FFCP PHASE2:Hg19::chr16:23489788..23489792,-#_0d8b26f99a13be234e64e78081546e2ep@chr16:23489788..23489792, -
9.37e-99FFCP PHASE1:Hg19::chr16:23489788..23489792,-#_0d8b26f99a13be234e64e78081546e2ep@chr16:23489788..23489792, -
9.37e-99FFCP PHASE2:Hg19::chr20:36694529..36694537,+#_0d8b26f99a13be234e64e78081546e2ep30@RPRD1B
9.37e-99FFCP PHASE1:Hg19::chr20:36694529..36694537,+#_0d8b26f99a13be234e64e78081546e2ep30@RPRD1B
9.37e-99FFCP PHASE2:Hg19::chr3:164875937..164875960,-#_0d8b26f99a13be234e64e78081546e2ep1@ENST00000472120
9.37e-99FFCP PHASE1:Hg19::chr3:164875937..164875960,-#_0d8b26f99a13be234e64e78081546e2ep1@ENST00000472120
2.55e-98FFCP PHASE1:Hg19::chr2:6919697..6919713,-#_5aad52455c16de63e13ba7422076afcdp@chr2:6919697..6919713, -
2.55e-98FFCP PHASE2:Hg19::chr7:25361115..25361117,+#_5aad52455c16de63e13ba7422076afcdp@chr7:25361115..25361117, +
2.55e-98FFCP PHASE2:Hg19::chr5:78065820..78065833,-#_5aad52455c16de63e13ba7422076afcdp27@LHFPL2
2.55e-98FFCP PHASE1:Hg19::chr7:25361115..25361117,+#_5aad52455c16de63e13ba7422076afcdp@chr7:25361115..25361117, +
2.55e-98FFCP PHASE1:Hg19::chr5:78065820..78065833,-#_5aad52455c16de63e13ba7422076afcdp27@LHFPL2
2.55e-98FFCP PHASE2:Hg19::chr1:204247050..204247059,-#_5aad52455c16de63e13ba7422076afcdp@chr1:204247050..204247059, -
2.55e-98FFCP PHASE1:Hg19::chr1:204247050..204247059,-#_5aad52455c16de63e13ba7422076afcdp@chr1:204247050..204247059, -
2.55e-98FFCP PHASE2:Hg19::chr19:42190911..42190925,-#_5aad52455c16de63e13ba7422076afcdp@chr19:42190911..42190925, -
2.55e-98FFCP PHASE2:Hg19::chr9:37384457..37384469,-#_5aad52455c16de63e13ba7422076afcdp1@ENST00000452923
2.55e-98FFCP PHASE2:Hg19::chr14:106090812..106090849,-#_5aad52455c16de63e13ba7422076afcdp@chr14:106090812..106090849, -
2.55e-98FFCP PHASE1:Hg19::chr9:37384457..37384469,-#_5aad52455c16de63e13ba7422076afcdp1@ENST00000452923
2.55e-98FFCP PHASE1:Hg19::chr19:42190911..42190925,-#_5aad52455c16de63e13ba7422076afcdp@chr19:42190911..42190925, -
2.55e-98FFCP PHASE1:Hg19::chr14:106090812..106090849,-#_5aad52455c16de63e13ba7422076afcdp@chr14:106090812..106090849, -
2.55e-98FFCP PHASE2:Hg19::chr8:23282797..23282803,-#_5aad52455c16de63e13ba7422076afcdp37@LOXL2
2.55e-98FFCP PHASE2:Hg19::chr14:106091272..106091292,-#_5aad52455c16de63e13ba7422076afcdp@chr14:106091272..106091292, -
2.55e-98FFCP PHASE1:Hg19::chr8:23282797..23282803,-#_5aad52455c16de63e13ba7422076afcdp37@LOXL2
2.55e-98FFCP PHASE1:Hg19::chr14:106091272..106091292,-#_5aad52455c16de63e13ba7422076afcdp@chr14:106091272..106091292, -
2.55e-98FFCP PHASE2:Hg19::chr2:6919697..6919713,-#_5aad52455c16de63e13ba7422076afcdp@chr2:6919697..6919713, -
1.23e-66FFCP PHASE2:Hg19::chr3:187957646..187957656,+#_01f263cd64b133dce57596ff770ec761p43@LPP
1.23e-66FFCP PHASE1:Hg19::chr3:187957646..187957656,+#_01f263cd64b133dce57596ff770ec761p43@LPP
1.23e-66FFCP PHASE2:Hg19::chr3:187957664..187957675,+#_01f263cd64b133dce57596ff770ec761p58@LPP
1.23e-66FFCP PHASE1:Hg19::chr3:187957664..187957675,+#_01f263cd64b133dce57596ff770ec761p58@LPP
2.39e-66FFCP PHASE2:Hg19::chr16:69418649..69418659,-#_02294e131eabb3da874b90a919d97d8cp@chr16:69418649..69418659, -
2.39e-66FFCP PHASE2:Hg19::chr1:157567826..157567835,-#_02294e131eabb3da874b90a919d97d8cp2@FCRL4
2.39e-66FFCP PHASE1:Hg19::chr16:69418649..69418659,-#_02294e131eabb3da874b90a919d97d8cp@chr16:69418649..69418659, -
2.39e-66FFCP PHASE1:Hg19::chr1:157567826..157567835,-#_02294e131eabb3da874b90a919d97d8cp2@FCRL4
4.66e-66FFCP PHASE2:Hg19::chr10:52121805..52121816,-#_ac270f18d9dac88892a32774647f5805p@chr10:52121805..52121816, -
4.66e-66FFCP PHASE1:Hg19::chr4:154343190..154343236,+#_ac270f18d9dac88892a32774647f5805p@chr4:154343190..154343236, +
4.66e-66FFCP PHASE1:Hg19::chr4:146980425..146980439,-#_ac270f18d9dac88892a32774647f5805p@chr4:146980425..146980439, -
4.66e-66FFCP PHASE2:Hg19::chr2:109392190..109392199,+#_ac270f18d9dac88892a32774647f5805p14@RANBP2
4.66e-66FFCP PHASE1:Hg19::chr2:109392190..109392199,+#_ac270f18d9dac88892a32774647f5805p14@RANBP2
4.66e-66FFCP PHASE2:Hg19::chr14:75906948..75906962,+#_ac270f18d9dac88892a32774647f5805p@chr14:75906948..75906962, +
4.66e-66FFCP PHASE2:Hg19::chr15:45950466..45950474,+#_ac270f18d9dac88892a32774647f5805p@chr15:45950466..45950474, +
4.66e-66FFCP PHASE2:Hg19::chr1:38201159..38201166,-#_ac270f18d9dac88892a32774647f5805p@chr1:38201159..38201166, -
4.66e-66FFCP PHASE1:Hg19::chr15:45950466..45950474,+#_ac270f18d9dac88892a32774647f5805p@chr15:45950466..45950474, +
4.66e-66FFCP PHASE1:Hg19::chr1:38201159..38201166,-#_ac270f18d9dac88892a32774647f5805p@chr1:38201159..38201166, -
4.66e-66FFCP PHASE1:Hg19::chr14:75906948..75906962,+#_ac270f18d9dac88892a32774647f5805p@chr14:75906948..75906962, +
4.66e-66FFCP PHASE2:Hg19::chr7:145507480..145507504,-#_ac270f18d9dac88892a32774647f5805p@chr7:145507480..145507504, -
4.66e-66FFCP PHASE2:Hg19::chr4:146980404..146980417,-#_ac270f18d9dac88892a32774647f5805p@chr4:146980404..146980417, -
4.66e-66FFCP PHASE2:Hg19::chr2:231068302..231068309,+#_ac270f18d9dac88892a32774647f5805p2@ENST00000441657
4.66e-66FFCP PHASE1:Hg19::chr10:52121805..52121816,-#_ac270f18d9dac88892a32774647f5805p@chr10:52121805..52121816, -
4.66e-66FFCP PHASE1:Hg19::chr4:146980404..146980417,-#_ac270f18d9dac88892a32774647f5805p@chr4:146980404..146980417, -
4.66e-66FFCP PHASE1:Hg19::chr2:231068302..231068309,+#_ac270f18d9dac88892a32774647f5805p2@ENST00000441657
4.66e-66FFCP PHASE2:Hg19::chr4:154343190..154343236,+#_ac270f18d9dac88892a32774647f5805p@chr4:154343190..154343236, +
4.66e-66FFCP PHASE2:Hg19::chr4:146980425..146980439,-#_ac270f18d9dac88892a32774647f5805p@chr4:146980425..146980439, -
4.66e-66FFCP PHASE1:Hg19::chr7:145507480..145507504,-#_ac270f18d9dac88892a32774647f5805p@chr7:145507480..145507504, -
1.46e-50FFCP PHASE2:Hg19::chr15:36739580..36739587,-#_6e53a8d30b935f92a639138e8acfa56fp@chr15:36739580..36739587, -
1.46e-50FFCP PHASE1:Hg19::chr15:36739580..36739587,-#_6e53a8d30b935f92a639138e8acfa56fp@chr15:36739580..36739587, -
1.46e-50FFCP PHASE2:Hg19::chr16:33629600..33629613,+#_6e53a8d30b935f92a639138e8acfa56fp1@AF343368
1.46e-50FFCP PHASE1:Hg19::chr16:33629600..33629613,+#_6e53a8d30b935f92a639138e8acfa56fp1@AF343368
2.42e-50FFCP PHASE1:Hg19::chr14:106091539..106091550,-#_96c92f535d5246f737dcdf638ab191a8p@chr14:106091539..106091550, -
2.42e-50FFCP PHASE2:Hg19::chr9:79267432..79267452,-#_96c92f535d5246f737dcdf638ab191a8p@chr9:79267432..79267452, -
2.42e-50FFCP PHASE2:Hg19::chr4:150822397..150822409,-#_96c92f535d5246f737dcdf638ab191a8p@chr4:150822397..150822409, -
2.42e-50FFCP PHASE1:Hg19::chr9:79267432..79267452,-#_96c92f535d5246f737dcdf638ab191a8p@chr9:79267432..79267452, -
2.42e-50FFCP PHASE1:Hg19::chr4:150822397..150822409,-#_96c92f535d5246f737dcdf638ab191a8p@chr4:150822397..150822409, -
2.42e-50FFCP PHASE2:Hg19::chr15:75639773..75639782,+#_96c92f535d5246f737dcdf638ab191a8p15@NEIL1
2.42e-50FFCP PHASE1:Hg19::chr12:31135774..31135816,+#_96c92f535d5246f737dcdf638ab191a8p@chr12:31135774..31135816, +
2.42e-50FFCP PHASE1:Hg19::chr15:75639773..75639782,+#_96c92f535d5246f737dcdf638ab191a8p15@NEIL1
2.42e-50FFCP PHASE2:Hg19::chr12:31135774..31135816,+#_96c92f535d5246f737dcdf638ab191a8p@chr12:31135774..31135816, +
2.42e-50FFCP PHASE2:Hg19::chr20:36694117..36694150,+#_96c92f535d5246f737dcdf638ab191a8p24@RPRD1B
2.42e-50FFCP PHASE1:Hg19::chr20:36694117..36694150,+#_96c92f535d5246f737dcdf638ab191a8p24@RPRD1B
2.42e-50FFCP PHASE2:Hg19::chr14:106091539..106091550,-#_96c92f535d5246f737dcdf638ab191a8p@chr14:106091539..106091550, -
3.99e-50FFCP PHASE1:Hg19::chr11:60260248..60260251,+#_894ffb0830438f27852be258e9bb1d19p1@MS4A12
3.99e-50FFCP PHASE2:Hg19::chr4:20985642..20985664,-#_894ffb0830438f27852be258e9bb1d19p16@KCNIP4
3.99e-50FFCP PHASE2:Hg19::chr7:40852366..40852377,+#_894ffb0830438f27852be258e9bb1d19p@chr7:40852366..40852377, +
3.99e-50FFCP PHASE1:Hg19::chr4:20985642..20985664,-#_894ffb0830438f27852be258e9bb1d19p16@KCNIP4
3.99e-50FFCP PHASE1:Hg19::chr7:40852366..40852377,+#_894ffb0830438f27852be258e9bb1d19p@chr7:40852366..40852377, +
3.99e-50FFCP PHASE2:Hg19::chr11:60260248..60260251,+#_894ffb0830438f27852be258e9bb1d19p1@MS4A12
3.99e-50FFCP PHASE2:Hg19::chr8:119294370..119294381,+#_894ffb0830438f27852be258e9bb1d19p4@ENST00000366457
3.99e-50FFCP PHASE1:Hg19::chr8:119294370..119294381,+#_894ffb0830438f27852be258e9bb1d19p4@ENST00000366457
6.58e-50FFCP PHASE2:Hg19::chr3:62809350..62809370,+#_3e41537f87b9935de0acffd8a4e5498dp@chr3:62809350..62809370, +
6.58e-50FFCP PHASE1:Hg19::chr7:40850556..40850576,+#_3e41537f87b9935de0acffd8a4e5498dp@chr7:40850556..40850576, +
6.58e-50FFCP PHASE1:Hg19::chr12:125634292..125634301,-#_3e41537f87b9935de0acffd8a4e5498dp@chr12:125634292..125634301, -
6.58e-50FFCP PHASE1:Hg19::chr3:62809350..62809370,+#_3e41537f87b9935de0acffd8a4e5498dp@chr3:62809350..62809370, +
6.58e-50FFCP PHASE2:Hg19::chr3:187694215..187694226,-#_3e41537f87b9935de0acffd8a4e5498dp2@ENST00000446091, p2@uc003frr.1
6.58e-50FFCP PHASE1:Hg19::chr3:187694215..187694226,-#_3e41537f87b9935de0acffd8a4e5498dp2@ENST00000446091, p2@uc003frr.1
6.58e-50FFCP PHASE2:Hg19::chr12:125634292..125634301,-#_3e41537f87b9935de0acffd8a4e5498dp@chr12:125634292..125634301, -
6.58e-50FFCP PHASE2:Hg19::chr14:106746150..106746153,-#_3e41537f87b9935de0acffd8a4e5498dp1@IGHV3-25
6.58e-50FFCP PHASE2:Hg19::chr5:78505723..78505730,+#_3e41537f87b9935de0acffd8a4e5498dp@chr5:78505723..78505730, +
6.58e-50FFCP PHASE1:Hg19::chr14:106746150..106746153,-#_3e41537f87b9935de0acffd8a4e5498dp1@IGHV3-25
6.58e-50FFCP PHASE1:Hg19::chr5:78505723..78505730,+#_3e41537f87b9935de0acffd8a4e5498dp@chr5:78505723..78505730, +
6.58e-50FFCP PHASE2:Hg19::chr7:40850556..40850576,+#_3e41537f87b9935de0acffd8a4e5498dp@chr7:40850556..40850576, +
6.62e-41FFCP PHASE2:Hg19::chr18:43195438..43195446,+#_e8947211b2e9282da1b61fc60bda6a7cp2@SLC14A2
6.62e-41FFCP PHASE1:Hg19::chr18:43195438..43195446,+#_e8947211b2e9282da1b61fc60bda6a7cp2@SLC14A2
6.62e-41FFCP PHASE2:Hg19::chr1:157567868..157567880,-#_e8947211b2e9282da1b61fc60bda6a7cp1@FCRL4
6.62e-41FFCP PHASE2:Hg19::chr3:58853593..58853604,-#_e8947211b2e9282da1b61fc60bda6a7cp@chr3:58853593..58853604, -
6.62e-41FFCP PHASE1:Hg19::chr1:157567868..157567880,-#_e8947211b2e9282da1b61fc60bda6a7cp1@FCRL4
6.62e-41FFCP PHASE1:Hg19::chr3:58853593..58853604,-#_e8947211b2e9282da1b61fc60bda6a7cp@chr3:58853593..58853604, -
6.62e-41FFCP PHASE2:Hg19::chr6:45748006..45748023,+#_e8947211b2e9282da1b61fc60bda6a7cp@chr6:45748006..45748023, +
6.62e-41FFCP PHASE1:Hg19::chr6:45748006..45748023,+#_e8947211b2e9282da1b61fc60bda6a7cp@chr6:45748006..45748023, +
9.91e-41FFCP PHASE1:Hg19::chr11:64914237..64914243,-#_42dcf8698f725b5d35d71cc7aac550e5p@chr11:64914237..64914243, -
9.91e-41FFCP PHASE2:Hg19::chr5:78065848..78065859,-#_42dcf8698f725b5d35d71cc7aac550e5p23@LHFPL2
9.91e-41FFCP PHASE1:Hg19::chr5:78065848..78065859,-#_42dcf8698f725b5d35d71cc7aac550e5p23@LHFPL2
9.91e-41FFCP PHASE2:Hg19::chr11:64914237..64914243,-#_42dcf8698f725b5d35d71cc7aac550e5p@chr11:64914237..64914243, -

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