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{{UBERON
{{UBERON
|id=UBERON:0001021
|alt_id=UBERON:FBbt_00005099-FMA_5914;;UBERON:FBbt_00005105-FMA_65132-MA_0000217-XAO_0003047-ZFA_0007009
|name=nerve
|namespace=
|def="an enclosed, cable-like bundle of peripheral axons [wikipedia]. A portion of tissue which is a fasiculated group of axons[ZFA]. Segment of neural tree organ which has as its parts a nerve trunk and its branches; together with other nerves of the same tree it constitutes a neural tree. Examples: chorda tympani, digastric branch of facial nerve, greater petrosal nerve, posterior cutaneous branch of posterior ramus of cervical nerve, superior lateral cutaneous nerve of arm[FMA]." [FMA:65132, Wikipedia:Nerve, ZFA:0007009, ZFIN:curator]
|xref=AAO:0011070;;AEO:0000137;;BTO:0000925;;EHDAA:2851;;EHDAA:3776;;EHDAA:4657;;EHDAA2:0003137;;EV:0100162;;FBbt:00005105;;FMA:65132;;GAID:758;;galen:Nerve;;MA:0000217;;ncithesaurus:Nerve;;OpenCyc:Mx4rwP3lkpwpEbGdrcN5Y29ycA;;SCTID:256864008;;TAO:0007009;;XAO:0003047;;ZFA:0007009
|is_a=UBERON:0000122;;UBERON:0003714
|synonym="neural subtree" RELATED [FMA:65132]
|comment=check nerve vs peripheral nerve vs tract. Check isa hierarchy - we include under neural tissue as well as neuron projection bundle for now. FMA also has this under organ segment
|comment=check nerve vs peripheral nerve vs tract. Check isa hierarchy - we include under neural tissue as well as neuron projection bundle for now. FMA also has this under organ segment
|alt_id=UBERON:FBbt_00005099-FMA_5914;;UBERON:FBbt_00005105-FMA_65132-MA_0000217-XAO_0003047-ZFA_0007009
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="an enclosed, cable-like bundle of peripheral axons [wikipedia]. A portion of tissue which is a fasiculated group of axons[ZFA]. Segment of neural tree organ which has as its parts a nerve trunk and its branches; together with other nerves of the same tree it constitutes a neural tree. Examples: chorda tympani, digastric branch of facial nerve, greater petrosal nerve, posterior cutaneous branch of posterior ramus of cervical nerve, superior lateral cutaneous nerve of arm[FMA]." [FMA:65132, Wikipedia:Nervous_system, ZFA:0007009, ZFIN:curator]
|subset=uberon_slim;;vertebrate_core
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0001021
|is_a=UBERON:0000122
|is_obsolete=
|located_in=
|located_in=
|name=nerve
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000010
|part_of=UBERON:0000010
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "A portion of tissue which is a fasiculated group of axons.[TAO]" xsd:string
|subset=uberon_slim;;vertebrate_core
|synonym="neural subtree" RELATED [FMA:65132]
|union_of=
|xref=AAO:0011070;;AEO:0000137;;BTO:0000925;;EHDAA2:0003137;;EHDAA:2851;;EHDAA:3776;;EHDAA:4657;;EV:0100162;;FBbt:00005105;;FMA:65132;;GAID:758;;galen:Nerve;;MA:0000217;;ncithesaurus:Nerve;;OpenCyc:Mx4rwP3lkpwpEbGdrcN5Y29ycA;;SCTID:256864008;;TAO:0007009;;XAO:0003047;;ZFA:0007009
}}
}}

Latest revision as of 17:14, 12 September 2014

Name:nerve
Namespace:FANTOM
Definition:"an enclosed, cable-like bundle of peripheral axons [wikipedia]. A portion of tissue which is a fasiculated group of axons[ZFA]. Segment of neural tree organ which has as its parts a nerve trunk and its branches; together with other nerves of the same tree it constitutes a neural tree. Examples: chorda tympani, digastric branch of facial nerve, greater petrosal nerve, posterior cutaneous branch of posterior ramus of cervical nerve, superior lateral cutaneous nerve of arm[FMA]." [FMA:65132, Wikipedia:Nervous_system, ZFA:0007009, ZFIN:curator]
Xrefs:
links:

AAO:0011070
AEO:0000137
BTO:0000925
EHDAA2:0003137
EHDAA:2851
EHDAA:3776
EHDAA:4657
EV:0100162
FBbt:00005105
FMA:65132
GAID:758
galen:Nerve
MA:0000217
ncithesaurus:Nerve
OpenCyc:Mx4rwP3lkpwpEbGdrcN5Y29ycA
SCTID:256864008
TAO:0007009
XAO:0003047

ZFA:0007009
Synonyms: "neural subtree" RELATED [FMA:65132]
Comments:check nerve vs peripheral nerve vs tract. Check isa hierarchy - we include under neural tissue as well as neuron projection bundle for now. FMA also has this under organ segment
Alt_id: UBERON:FBbt_00005099-FMA_5914
UBERON:FBbt_00005105-FMA_65132-MA_0000217-XAO_0003047-ZFA_0007009
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000122(neuron projection bundle)
part_of:UBERON:0000010(peripheral nervous system)



Children

is a:UBERON:0001785 (cranial nerve),UBERON:0002003 (peripheral nerve),UBERON:0004904 (nerve connecting eye with brain)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001021 (nerve), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr12:57628762..57628773,-#_d0b545b5131017920ff8b5c7c4fff5e4p@chr12:57628762..57628773, -
5.42e-195FFCP PHASE2:Hg19::chr12:57628762..57628773,-#_d0b545b5131017920ff8b5c7c4fff5e4p@chr12:57628762..57628773, -
9.37e-99FFCP PHASE1:Hg19::chr4:127394496..127394500,-#_d3a833bbac083d29f403c01eb3a10c7bp@chr4:127394496..127394500, -
9.37e-99FFCP PHASE2:Hg19::chr4:127394496..127394500,-#_d3a833bbac083d29f403c01eb3a10c7bp@chr4:127394496..127394500, -
9.37e-99FFCP PHASE1:Hg19::chr2:188432107..188432111,+#_d3a833bbac083d29f403c01eb3a10c7bp@chr2:188432107..188432111, +
9.37e-99FFCP PHASE1:Hg19::chr5:151258901..151258902,+#_d3a833bbac083d29f403c01eb3a10c7bp@chr5:151258901..151258902, +
9.37e-99FFCP PHASE1:Hg19::chr18:74702556..74702558,-#_d3a833bbac083d29f403c01eb3a10c7bp@chr18:74702556..74702558, -
9.37e-99FFCP PHASE2:Hg19::chr5:151258901..151258902,+#_d3a833bbac083d29f403c01eb3a10c7bp@chr5:151258901..151258902, +
9.37e-99FFCP PHASE2:Hg19::chr18:74702556..74702558,-#_d3a833bbac083d29f403c01eb3a10c7bp@chr18:74702556..74702558, -
9.37e-99FFCP PHASE1:Hg19::chr5:149250331..149250335,-#_d3a833bbac083d29f403c01eb3a10c7bp@chr5:149250331..149250335, -
9.37e-99FFCP PHASE2:Hg19::chr1:62928606..62928608,+#_d3a833bbac083d29f403c01eb3a10c7bp@chr1:62928606..62928608, +
9.37e-99FFCP PHASE1:Hg19::chr14:105807545..105807554,+#_d3a833bbac083d29f403c01eb3a10c7bp@chr14:105807545..105807554, +
9.37e-99FFCP PHASE1:Hg19::chr2:60133192..60133194,-#_d3a833bbac083d29f403c01eb3a10c7bp@chr2:60133192..60133194, -
9.37e-99FFCP PHASE1:Hg19::chr18:25161980..25161984,-#_d3a833bbac083d29f403c01eb3a10c7bp@chr18:25161980..25161984, -
9.37e-99FFCP PHASE2:Hg19::chr5:149250331..149250335,-#_d3a833bbac083d29f403c01eb3a10c7bp@chr5:149250331..149250335, -
9.37e-99FFCP PHASE2:Hg19::chr2:188432107..188432111,+#_d3a833bbac083d29f403c01eb3a10c7bp@chr2:188432107..188432111, +
9.37e-99FFCP PHASE1:Hg19::chr7:15056365..15056368,-#_d3a833bbac083d29f403c01eb3a10c7bp@chr7:15056365..15056368, -
9.37e-99FFCP PHASE2:Hg19::chr7:15056365..15056368,-#_d3a833bbac083d29f403c01eb3a10c7bp@chr7:15056365..15056368, -
9.37e-99FFCP PHASE2:Hg19::chr14:105807545..105807554,+#_d3a833bbac083d29f403c01eb3a10c7bp@chr14:105807545..105807554, +
9.37e-99FFCP PHASE2:Hg19::chr2:60133192..60133194,-#_d3a833bbac083d29f403c01eb3a10c7bp@chr2:60133192..60133194, -
9.37e-99FFCP PHASE1:Hg19::chr1:62928606..62928608,+#_d3a833bbac083d29f403c01eb3a10c7bp@chr1:62928606..62928608, +
9.37e-99FFCP PHASE2:Hg19::chr18:25161980..25161984,-#_d3a833bbac083d29f403c01eb3a10c7bp@chr18:25161980..25161984, -
2.55e-98FFCP PHASE1:Hg19::chr4:130221053..130221071,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr4:130221053..130221071, +
2.55e-98FFCP PHASE1:Hg19::chr16:89970522..89970530,+#_5f828c8a1ebb642a109db98d40eb5b79p9@TCF25
2.55e-98FFCP PHASE2:Hg19::chr7:88535666..88535671,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr7:88535666..88535671, +
2.55e-98FFCP PHASE2:Hg19::chr21:22483836..22483880,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr21:22483836..22483880, +
2.55e-98FFCP PHASE1:Hg19::chr1:44991346..44991355,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr1:44991346..44991355, +
2.55e-98FFCP PHASE2:Hg19::chr14:85119696..85119699,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr14:85119696..85119699, +
2.55e-98FFCP PHASE1:Hg19::chr14:106176908..106176916,-#_5f828c8a1ebb642a109db98d40eb5b79p3@BC098451
2.55e-98FFCP PHASE2:Hg19::chr4:130221053..130221071,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr4:130221053..130221071, +
2.55e-98FFCP PHASE2:Hg19::chr16:51174920..51174928,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr16:51174920..51174928, -
2.55e-98FFCP PHASE2:Hg19::chr1:154942133..154942148,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr1:154942133..154942148, -
2.55e-98FFCP PHASE2:Hg19::chr14:88034381..88034386,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr14:88034381..88034386, -
2.55e-98FFCP PHASE1:Hg19::chr3:181328346..181328351,+#_5f828c8a1ebb642a109db98d40eb5b79p22@SOX2-OT
2.55e-98FFCP PHASE1:Hg19::chr11:2435409..2435443,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr11:2435409..2435443, -
2.55e-98FFCP PHASE1:Hg19::chr16:55740953..55740956,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr16:55740953..55740956, +
2.55e-98FFCP PHASE1:Hg19::chr2:165170873..165170919,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr2:165170873..165170919, -
2.55e-98FFCP PHASE1:Hg19::chr16:19586229..19586233,+#_5f828c8a1ebb642a109db98d40eb5b79p12@C16orf62
2.55e-98FFCP PHASE1:Hg19::chr14:78718132..78718157,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr14:78718132..78718157, +
2.55e-98FFCP PHASE2:Hg19::chr3:181328346..181328351,+#_5f828c8a1ebb642a109db98d40eb5b79p22@SOX2-OT
2.55e-98FFCP PHASE2:Hg19::chr14:68589926..68589929,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr14:68589926..68589929, +
2.55e-98FFCP PHASE1:Hg19::chr4:139590958..139590961,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr4:139590958..139590961, -
2.55e-98FFCP PHASE1:Hg19::chr3:131712314..131712315,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr3:131712314..131712315, -
2.55e-98FFCP PHASE1:Hg19::chr8:133945378..133945386,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr8:133945378..133945386, +
2.55e-98FFCP PHASE2:Hg19::chr11:2435409..2435443,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr11:2435409..2435443, -
2.55e-98FFCP PHASE1:Hg19::chr1:86911063..86911068,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr1:86911063..86911068, +
2.55e-98FFCP PHASE2:Hg19::chr15:69850503..69850506,+#_5f828c8a1ebb642a109db98d40eb5b79p3@ENST00000558781
2.55e-98FFCP PHASE1:Hg19::chrX:131884370..131884375,-#_5f828c8a1ebb642a109db98d40eb5b79p@chrX:131884370..131884375, -
2.55e-98FFCP PHASE2:Hg19::chr4:139590958..139590961,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr4:139590958..139590961, -
2.55e-98FFCP PHASE1:Hg19::chr9:74167667..74167687,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr9:74167667..74167687, -
2.55e-98FFCP PHASE2:Hg19::chr9:74167667..74167687,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr9:74167667..74167687, -
2.55e-98FFCP PHASE1:Hg19::chr6:121951983..121951986,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr6:121951983..121951986, +
2.55e-98FFCP PHASE2:Hg19::chr8:133945378..133945386,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr8:133945378..133945386, +
2.55e-98FFCP PHASE1:Hg19::chr8:90420477..90420478,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr8:90420477..90420478, -
2.55e-98FFCP PHASE2:Hg19::chr15:36402459..36402465,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr15:36402459..36402465, -
2.55e-98FFCP PHASE1:Hg19::chr9:19514976..19514978,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr9:19514976..19514978, -
2.55e-98FFCP PHASE2:Hg19::chr2:30144229..30144240,-#_5f828c8a1ebb642a109db98d40eb5b79p10@ALK
2.55e-98FFCP PHASE1:Hg19::chr12:78359873..78359882,+#_5f828c8a1ebb642a109db98d40eb5b79p41@NAV3
2.55e-98FFCP PHASE2:Hg19::chr11:79291300..79291301,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr11:79291300..79291301, +
2.55e-98FFCP PHASE2:Hg19::chr2:134472430..134472432,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr2:134472430..134472432, +
2.55e-98FFCP PHASE2:Hg19::chr6:121951983..121951986,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr6:121951983..121951986, +
2.55e-98FFCP PHASE1:Hg19::chr11:79291300..79291301,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr11:79291300..79291301, +
2.55e-98FFCP PHASE2:Hg19::chr8:90420477..90420478,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr8:90420477..90420478, -
2.55e-98FFCP PHASE1:Hg19::chr11:20791058..20791067,+#_5f828c8a1ebb642a109db98d40eb5b79p10@NELL1
2.55e-98FFCP PHASE1:Hg19::chr2:192696669..192696673,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr2:192696669..192696673, +
2.55e-98FFCP PHASE2:Hg19::chr9:19514976..19514978,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr9:19514976..19514978, -
2.55e-98FFCP PHASE1:Hg19::chr10:22768515..22768517,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr10:22768515..22768517, +
2.55e-98FFCP PHASE1:Hg19::chr8:22000519..22000525,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr8:22000519..22000525, -
2.55e-98FFCP PHASE1:Hg19::chr2:242808350..242808356,+#_5f828c8a1ebb642a109db98d40eb5b79p2@LOC100131763
2.55e-98FFCP PHASE2:Hg19::chr1:1413227..1413230,+#_5f828c8a1ebb642a109db98d40eb5b79p2@ATAD3B
2.55e-98FFCP PHASE2:Hg19::chr14:76447439..76447452,-#_5f828c8a1ebb642a109db98d40eb5b79p18@TGFB3
2.55e-98FFCP PHASE2:Hg19::chr22:30951607..30951613,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr22:30951607..30951613, -
2.55e-98FFCP PHASE1:Hg19::chr7:95704857..95704906,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr7:95704857..95704906, +
2.55e-98FFCP PHASE1:Hg19::chr2:240176859..240176904,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr2:240176859..240176904, -
2.55e-98FFCP PHASE2:Hg19::chr8:22000519..22000525,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr8:22000519..22000525, -
2.55e-98FFCP PHASE2:Hg19::chr1:218214846..218214850,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr1:218214846..218214850, -
2.55e-98FFCP PHASE1:Hg19::chr5:111570472..111570478,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr5:111570472..111570478, -
2.55e-98FFCP PHASE2:Hg19::chr2:133035182..133035195,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr2:133035182..133035195, -
2.55e-98FFCP PHASE1:Hg19::chr3:163246025..163246029,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr3:163246025..163246029, +
2.55e-98FFCP PHASE1:Hg19::chr11:57030314..57030346,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr11:57030314..57030346, +
2.55e-98FFCP PHASE1:Hg19::chr2:97626726..97626741,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr2:97626726..97626741, +
2.55e-98FFCP PHASE2:Hg19::chr11:20791058..20791067,+#_5f828c8a1ebb642a109db98d40eb5b79p10@NELL1
2.55e-98FFCP PHASE1:Hg19::chr21:45724075..45724081,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr21:45724075..45724081, +
2.55e-98FFCP PHASE2:Hg19::chr7:95704857..95704906,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr7:95704857..95704906, +
2.55e-98FFCP PHASE1:Hg19::chr6:168558338..168558388,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr6:168558338..168558388, -
2.55e-98FFCP PHASE2:Hg19::chr5:111570472..111570478,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr5:111570472..111570478, -
2.55e-98FFCP PHASE1:Hg19::chr5:1414652..1414695,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr5:1414652..1414695, +
2.55e-98FFCP PHASE2:Hg19::chr6:168558338..168558388,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr6:168558338..168558388, -
2.55e-98FFCP PHASE2:Hg19::chr5:1414652..1414695,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr5:1414652..1414695, +
2.55e-98FFCP PHASE1:Hg19::chr3:181328472..181328478,+#_5f828c8a1ebb642a109db98d40eb5b79p25@SOX2-OT
2.55e-98FFCP PHASE2:Hg19::chr12:72875355..72875358,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr12:72875355..72875358, +
2.55e-98FFCP PHASE2:Hg19::chr2:29484252..29484254,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr2:29484252..29484254, -
2.55e-98FFCP PHASE1:Hg19::chr8:126163123..126163134,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr8:126163123..126163134, +
2.55e-98FFCP PHASE2:Hg19::chr16:70563415..70563420,+#_5f828c8a1ebb642a109db98d40eb5b79p4@SNORD111B
2.55e-98FFCP PHASE1:Hg19::chr4:188536760..188536764,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr4:188536760..188536764, -
2.55e-98FFCP PHASE1:Hg19::chr2:21277180..21277193,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr2:21277180..21277193, +
2.55e-98FFCP PHASE1:Hg19::chr2:29645795..29645797,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr2:29645795..29645797, +
2.55e-98FFCP PHASE1:Hg19::chr7:103086717..103086724,+#_5f828c8a1ebb642a109db98d40eb5b79p@chr7:103086717..103086724, +
2.55e-98FFCP PHASE1:Hg19::chr7:77789390..77789399,-#_5f828c8a1ebb642a109db98d40eb5b79p@chr7:77789390..77789399, -
2.55e-98FFCP PHASE2:Hg19::chr3:181328472..181328478,+#_5f828c8a1ebb642a109db98d40eb5b79p25@SOX2-OT










Property "Property value" (as page type) with input value "UBPROP:0000001 "A portion of tissue which is a fasiculated group of axons.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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