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{{UBERON
{{UBERON
|id=UBERON:0000997
|alt_id=UBERON:FBbt_00004926-FMA_20462-FMA_225311-MA_0000395-MIAA_0000169-WBbt_0006748
|name=mammalian vulva
|namespace=
|def="external genital organs of the female mammal[WP]." [Wikipedia:Vulva]
|xref=BTO:0003101;;EFO:0000978;;EV:0100118;;FMA:20462;;GAID:383;;galen:Vulva;;http://upload.wikimedia.org/wikipedia/commons/d/da/Female_unshaved_genitalia.jpg;;MA:0000395;;MAT:0000169;;MESH:A.05.360.319.887;;MIAA:0000169;;ncithesaurus:Vulva;;OpenCyc:Mx4rvgAWeJwpEbGdrcN5Y29ycA;;SCTID:265796001;;VHOG:0001458
|is_a=UBERON:0005056
|synonym="female pudendum" EXACT [FMA:20462];;"female pudendum" EXACT [BTO:0003101];;"mammalian vulva" EXACT [];;"puboperineal region" EXACT [FMA:20462];;"pudendum femininum" EXACT [FMA:20462, FMA:TA];;"pudendum femininum" RELATED LATIN [Wikipedia:Vulva];;"skin of female pudendum" EXACT [];;"skin of vulva" EXACT [];;"vulva" EXACT [MA:0000395]
|comment=editor note: todo - add pudendum
|comment=editor note: todo - add pudendum
|alt_id=UBERON:FBbt_00004926-FMA_20462-FMA_225311-MA_0000395-MIAA_0000169-WBbt_0006748
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="external genital organs of the female mammal[WP]." [Wikipedia:Vulva]
|subset=uberon_slim
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0000997
|is_a=UBERON:0000062 ;;UBERON:0005156 ;;UBERON:0014404
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=mammalian vulva
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0005056
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=uberon_slim
|preceded_by=
|synonym="female pudendum" EXACT [FMA:20462];;"female pudendum" EXACT [BTO:0003101];;"mammalian vulva" EXACT [];;"puboperineal region" EXACT [FMA:20462];;"pudendum femininum" EXACT [FMA:20462, FMA:TA];;"pudendum femininum" RELATED LATIN [Wikipedia:Vulva];;"skin of female pudendum" EXACT [];;"skin of vulva" EXACT [];;"vulva" EXACT [MA:0000395]
|union_of=
|xref=BTO:0003101;;EFO:0000978;;EV:0100118;;FMA:20462;;GAID:383;;galen:Vulva;;http://upload.wikimedia.org/wikipedia/commons/d/da/Female_unshaved_genitalia.jpg;;MA:0000395;;MAT:0000169;;MESH:A.05.360.319.887;;MIAA:0000169;;ncithesaurus:Vulva;;OpenCyc:Mx4rvgAWeJwpEbGdrcN5Y29ycA;;SCTID:265796001;;VHOG:0001458
}}
}}

Latest revision as of 17:13, 12 September 2014

Name:mammalian vulva
Namespace:FANTOM
Definition:"external genital organs of the female mammal[WP]." [Wikipedia:Vulva]
Xrefs:
links:

BTO:0003101
EFO:0000978
EV:0100118
FMA:20462
GAID:383
galen:Vulva
[1]
MA:0000395
MAT:0000169
MESH:A.05.360.319.887
MIAA:0000169
ncithesaurus:Vulva
OpenCyc:Mx4rvgAWeJwpEbGdrcN5Y29ycA
SCTID:265796001

VHOG:0001458
Synonyms: "female pudendum" EXACT [FMA:20462]
"female pudendum" EXACT [BTO:0003101]
"mammalian vulva" EXACT []
"puboperineal region" EXACT [FMA:20462]
"pudendum femininum" EXACT [FMA:20462, FMA:TA]
"pudendum femininum" RELATED LATIN [Wikipedia:Vulva]
"skin of female pudendum" EXACT []
"skin of vulva" EXACT []
"vulva" EXACT [MA:0000395]
Comments:editor note: todo - add pudendum
Alt_id: UBERON:FBbt_00004926-FMA_20462-FMA_225311-MA_0000395-MIAA_0000169-WBbt_0006748
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000062(organ),UBERON:0005156(reproductive structure),UBERON:0014404(female anatomical structure)
part_of:UBERON:0005056(external female genitalia)



Children

derives from:FF:0100017 (A-431 cell sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000997 (mammalian vulva), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE2:Hg19::chr2:72258505..72258535,+#_59c701e7152de2a14708c87d4b6b3759p@chr2:72258505..72258535, +
5.42e-195FFCP PHASE2:Hg19::chr5:84943573..84943591,-#_59c701e7152de2a14708c87d4b6b3759p@chr5:84943573..84943591, -
5.42e-195FFCP PHASE1:Hg19::chr11:69988499..69988503,-#_59c701e7152de2a14708c87d4b6b3759p@chr11:69988499..69988503, -
5.42e-195FFCP PHASE2:Hg19::chr7:55088621..55088630,+#_59c701e7152de2a14708c87d4b6b3759p@chr7:55088621..55088630, +
5.42e-195FFCP PHASE2:Hg19::chr11:69988499..69988503,-#_59c701e7152de2a14708c87d4b6b3759p@chr11:69988499..69988503, -
5.42e-195FFCP PHASE1:Hg19::chr19:51512580..51512608,-#_59c701e7152de2a14708c87d4b6b3759p@chr19:51512580..51512608, -
5.42e-195FFCP PHASE1:Hg19::chr17:39678082..39678085,-#_59c701e7152de2a14708c87d4b6b3759p15@KRT15
5.42e-195FFCP PHASE1:Hg19::chr9:135687993..135687996,+#_59c701e7152de2a14708c87d4b6b3759p@chr9:135687993..135687996, +
5.42e-195FFCP PHASE1:Hg19::chr6:43706592..43706595,-#_59c701e7152de2a14708c87d4b6b3759p@chr6:43706592..43706595, -
5.42e-195FFCP PHASE1:Hg19::chr2:72258505..72258535,+#_59c701e7152de2a14708c87d4b6b3759p@chr2:72258505..72258535, +
5.42e-195FFCP PHASE1:Hg19::chr5:84943573..84943591,-#_59c701e7152de2a14708c87d4b6b3759p@chr5:84943573..84943591, -
5.42e-195FFCP PHASE1:Hg19::chr7:55088621..55088630,+#_59c701e7152de2a14708c87d4b6b3759p@chr7:55088621..55088630, +
5.42e-195FFCP PHASE2:Hg19::chr4:23975557..23975561,-#_59c701e7152de2a14708c87d4b6b3759p@chr4:23975557..23975561, -
5.42e-195FFCP PHASE2:Hg19::chr19:51512580..51512608,-#_59c701e7152de2a14708c87d4b6b3759p@chr19:51512580..51512608, -
5.42e-195FFCP PHASE2:Hg19::chr17:39678082..39678085,-#_59c701e7152de2a14708c87d4b6b3759p15@KRT15
5.42e-195FFCP PHASE1:Hg19::chr4:23975557..23975561,-#_59c701e7152de2a14708c87d4b6b3759p@chr4:23975557..23975561, -
5.42e-195FFCP PHASE2:Hg19::chr9:135687993..135687996,+#_59c701e7152de2a14708c87d4b6b3759p@chr9:135687993..135687996, +
5.42e-195FFCP PHASE2:Hg19::chr6:43706592..43706595,-#_59c701e7152de2a14708c87d4b6b3759p@chr6:43706592..43706595, -
9.37e-99FFCP PHASE2:Hg19::chr1:209980124..209980125,+#_cb54ae763aff96140d22aba36b2ac662p@chr1:209980124..209980125, +
9.37e-99FFCP PHASE2:Hg19::chr4:24105215..24105219,-#_cb54ae763aff96140d22aba36b2ac662p@chr4:24105215..24105219, -
9.37e-99FFCP PHASE1:Hg19::chr4:24188430..24188435,-#_cb54ae763aff96140d22aba36b2ac662p@chr4:24188430..24188435, -
9.37e-99FFCP PHASE2:Hg19::chr4:24125531..24125534,-#_cb54ae763aff96140d22aba36b2ac662p@chr4:24125531..24125534, -
9.37e-99FFCP PHASE1:Hg19::chr1:209980124..209980125,+#_cb54ae763aff96140d22aba36b2ac662p@chr1:209980124..209980125, +
9.37e-99FFCP PHASE1:Hg19::chr4:24105215..24105219,-#_cb54ae763aff96140d22aba36b2ac662p@chr4:24105215..24105219, -
9.37e-99FFCP PHASE2:Hg19::chr1:222131869..222131874,+#_cb54ae763aff96140d22aba36b2ac662p@chr1:222131869..222131874, +
9.37e-99FFCP PHASE2:Hg19::chr4:24133915..24133919,-#_cb54ae763aff96140d22aba36b2ac662p@chr4:24133915..24133919, -
9.37e-99FFCP PHASE2:Hg19::chr4:24233822..24233825,-#_cb54ae763aff96140d22aba36b2ac662p@chr4:24233822..24233825, -
9.37e-99FFCP PHASE1:Hg19::chr4:24125531..24125534,-#_cb54ae763aff96140d22aba36b2ac662p@chr4:24125531..24125534, -
9.37e-99FFCP PHASE2:Hg19::chr4:24188430..24188435,-#_cb54ae763aff96140d22aba36b2ac662p@chr4:24188430..24188435, -
9.37e-99FFCP PHASE1:Hg19::chr1:222131869..222131874,+#_cb54ae763aff96140d22aba36b2ac662p@chr1:222131869..222131874, +
9.37e-99FFCP PHASE1:Hg19::chr4:24133915..24133919,-#_cb54ae763aff96140d22aba36b2ac662p@chr4:24133915..24133919, -
9.37e-99FFCP PHASE1:Hg19::chr4:24233822..24233825,-#_cb54ae763aff96140d22aba36b2ac662p@chr4:24233822..24233825, -
2.55e-98FFCP PHASE2:Hg19::chr7:55141834..55141838,-#_fa9e7d99d795447c66e16d1bce87e2aep@chr7:55141834..55141838, -
2.55e-98FFCP PHASE1:Hg19::chr7:55141834..55141838,-#_fa9e7d99d795447c66e16d1bce87e2aep@chr7:55141834..55141838, -
1.23e-66FFCP PHASE1:Hg19::chr4:23981805..23981809,-#_f0b6609b08c0115f324da7f893693cd8p@chr4:23981805..23981809, -
1.23e-66FFCP PHASE2:Hg19::chr3:193809263..193809278,+#_f0b6609b08c0115f324da7f893693cd8p1@ENST00000457815
1.23e-66FFCP PHASE1:Hg19::chr4:24100907..24100911,-#_f0b6609b08c0115f324da7f893693cd8p@chr4:24100907..24100911, -
1.23e-66FFCP PHASE1:Hg19::chr3:193809263..193809278,+#_f0b6609b08c0115f324da7f893693cd8p1@ENST00000457815
1.23e-66FFCP PHASE2:Hg19::chr4:23981805..23981809,-#_f0b6609b08c0115f324da7f893693cd8p@chr4:23981805..23981809, -
1.23e-66FFCP PHASE2:Hg19::chr4:24100907..24100911,-#_f0b6609b08c0115f324da7f893693cd8p@chr4:24100907..24100911, -
2.39e-66FFCP PHASE2:Hg19::chr17:39675882..39675894,-#_ad6cb382664ad28f38980fe911a4303dp@chr17:39675882..39675894, -
2.39e-66FFCP PHASE1:Hg19::chr6:159149368..159149371,-#_ad6cb382664ad28f38980fe911a4303dp@chr6:159149368..159149371, -
2.39e-66FFCP PHASE1:Hg19::chr1:23330592..23330593,-#_ad6cb382664ad28f38980fe911a4303dp@chr1:23330592..23330593, -
2.39e-66FFCP PHASE1:Hg19::chr17:39675882..39675894,-#_ad6cb382664ad28f38980fe911a4303dp@chr17:39675882..39675894, -
2.39e-66FFCP PHASE2:Hg19::chr6:159149368..159149371,-#_ad6cb382664ad28f38980fe911a4303dp@chr6:159149368..159149371, -
2.39e-66FFCP PHASE2:Hg19::chr1:23330592..23330593,-#_ad6cb382664ad28f38980fe911a4303dp@chr1:23330592..23330593, -
4.66e-66FFCP PHASE1:Hg19::chr18:61254400..61254410,+#_5b0596b8381e3081eb7761033ed228e1p8@SERPINB13
4.66e-66FFCP PHASE2:Hg19::chr18:61254400..61254410,+#_5b0596b8381e3081eb7761033ed228e1p8@SERPINB13
6.58e-50FFCP PHASE2:Hg19::chr20:46473115..46473124,-#_e6f6dd326764ebcfe866aa5fa7694ce9p@chr20:46473115..46473124, -
6.58e-50FFCP PHASE1:Hg19::chr7:154497207..154497243,-#_e6f6dd326764ebcfe866aa5fa7694ce9p@chr7:154497207..154497243, -
6.58e-50FFCP PHASE1:Hg19::chr16:3041330..3041336,+#_e6f6dd326764ebcfe866aa5fa7694ce9p@chr16:3041330..3041336, +
6.58e-50FFCP PHASE1:Hg19::chr1:27192983..27192986,+#_e6f6dd326764ebcfe866aa5fa7694ce9p@chr1:27192983..27192986, +
6.58e-50FFCP PHASE2:Hg19::chr16:3041330..3041336,+#_e6f6dd326764ebcfe866aa5fa7694ce9p@chr16:3041330..3041336, +
6.58e-50FFCP PHASE2:Hg19::chr7:98870934..98870947,+#_e6f6dd326764ebcfe866aa5fa7694ce9p4@MYH16
6.58e-50FFCP PHASE2:Hg19::chr7:98870948..98870967,+#_e6f6dd326764ebcfe866aa5fa7694ce9p3@MYH16
6.58e-50FFCP PHASE1:Hg19::chr20:46473115..46473124,-#_e6f6dd326764ebcfe866aa5fa7694ce9p@chr20:46473115..46473124, -
6.58e-50FFCP PHASE1:Hg19::chr7:98870934..98870947,+#_e6f6dd326764ebcfe866aa5fa7694ce9p4@MYH16
6.58e-50FFCP PHASE2:Hg19::chr1:209945709..209945715,-#_e6f6dd326764ebcfe866aa5fa7694ce9p@chr1:209945709..209945715, -
6.58e-50FFCP PHASE2:Hg19::chr7:154497207..154497243,-#_e6f6dd326764ebcfe866aa5fa7694ce9p@chr7:154497207..154497243, -
6.58e-50FFCP PHASE1:Hg19::chr7:98870948..98870967,+#_e6f6dd326764ebcfe866aa5fa7694ce9p3@MYH16
6.58e-50FFCP PHASE2:Hg19::chr1:27192983..27192986,+#_e6f6dd326764ebcfe866aa5fa7694ce9p@chr1:27192983..27192986, +
6.58e-50FFCP PHASE1:Hg19::chr1:209945709..209945715,-#_e6f6dd326764ebcfe866aa5fa7694ce9p@chr1:209945709..209945715, -
6.62e-41FFCP PHASE2:Hg19::chr18:61586483..61586487,+#_63a85859dcf7a5cfc555a190681d53b2p@chr18:61586483..61586487, +
6.62e-41FFCP PHASE2:Hg19::chr6:47009992..47009993,-#_63a85859dcf7a5cfc555a190681d53b2p4@GPR110
6.62e-41FFCP PHASE1:Hg19::chr15:92484587..92484596,+#_63a85859dcf7a5cfc555a190681d53b2p14@SLCO3A1
6.62e-41FFCP PHASE2:Hg19::chr15:92484587..92484596,+#_63a85859dcf7a5cfc555a190681d53b2p14@SLCO3A1
6.62e-41FFCP PHASE1:Hg19::chr18:61586483..61586487,+#_63a85859dcf7a5cfc555a190681d53b2p@chr18:61586483..61586487, +
6.62e-41FFCP PHASE1:Hg19::chr6:47009992..47009993,-#_63a85859dcf7a5cfc555a190681d53b2p4@GPR110
9.91e-41FFCP PHASE2:Hg19::chr7:55270422..55270434,+#_9845ffc1b9206a0e73808a351c806c79p@chr7:55270422..55270434, +
9.91e-41FFCP PHASE2:Hg19::chr7:55149426..55149432,+#_9845ffc1b9206a0e73808a351c806c79p@chr7:55149426..55149432, +
9.91e-41FFCP PHASE1:Hg19::chr7:55270422..55270434,+#_9845ffc1b9206a0e73808a351c806c79p@chr7:55270422..55270434, +
9.91e-41FFCP PHASE1:Hg19::chr7:55149426..55149432,+#_9845ffc1b9206a0e73808a351c806c79p@chr7:55149426..55149432, +
1.48e-40FFCP PHASE1:Hg19::chr7:4722965..4723005,-#_ed932e3bb47b318b7ba539c926d4f0d1p@chr7:4722965..4723005, -
1.48e-40FFCP PHASE2:Hg19::chr17:39675950..39675974,-#_ed932e3bb47b318b7ba539c926d4f0d1p@chr17:39675950..39675974, -
1.48e-40FFCP PHASE2:Hg19::chr8:143866652..143866665,-#_ed932e3bb47b318b7ba539c926d4f0d1p@chr8:143866652..143866665, -
1.48e-40FFCP PHASE1:Hg19::chr17:39675950..39675974,-#_ed932e3bb47b318b7ba539c926d4f0d1p@chr17:39675950..39675974, -
1.48e-40FFCP PHASE2:Hg19::chr7:4722965..4723005,-#_ed932e3bb47b318b7ba539c926d4f0d1p@chr7:4722965..4723005, -
1.48e-40FFCP PHASE1:Hg19::chr8:143866652..143866665,-#_ed932e3bb47b318b7ba539c926d4f0d1p@chr8:143866652..143866665, -
2.21e-40FFCP PHASE1:Hg19::chr3:50308296..50308307,+#_1d7a4dfec50c20839f8f5bfade6f138cp9@SEMA3B
2.21e-40FFCP PHASE1:Hg19::chr15:101417937..101417955,+#_1d7a4dfec50c20839f8f5bfade6f138cp8@ALDH1A3
2.21e-40FFCP PHASE2:Hg19::chr15:101417937..101417955,+#_1d7a4dfec50c20839f8f5bfade6f138cp8@ALDH1A3
2.21e-40FFCP PHASE2:Hg19::chr3:50308296..50308307,+#_1d7a4dfec50c20839f8f5bfade6f138cp9@SEMA3B
3.3e-40FFCP PHASE1:Hg19::chr17:2264983..2264992,+#_3e7e06500e00c031799a915ecbf83df0p@chr17:2264983..2264992, +
3.3e-40FFCP PHASE2:Hg19::chr2:165650899..165650926,-#_3e7e06500e00c031799a915ecbf83df0p@chr2:165650899..165650926, -
3.3e-40FFCP PHASE2:Hg19::chr17:2264983..2264992,+#_3e7e06500e00c031799a915ecbf83df0p@chr17:2264983..2264992, +
3.3e-40FFCP PHASE1:Hg19::chr2:165650899..165650926,-#_3e7e06500e00c031799a915ecbf83df0p@chr2:165650899..165650926, -
1.84e-34FFCP PHASE1:Hg19::chr7:55053540..55053550,+#_07e420f3dd56871d9cf7587febc54cf5p@chr7:55053540..55053550, +
1.84e-34FFCP PHASE2:Hg19::chr4:24208460..24208464,-#_07e420f3dd56871d9cf7587febc54cf5p@chr4:24208460..24208464, -
1.84e-34FFCP PHASE2:Hg19::chr8:143814432..143814436,-#_07e420f3dd56871d9cf7587febc54cf5p@chr8:143814432..143814436, -
1.84e-34FFCP PHASE2:Hg19::chr4:24232569..24232574,-#_07e420f3dd56871d9cf7587febc54cf5p@chr4:24232569..24232574, -
1.84e-34FFCP PHASE1:Hg19::chr4:24208460..24208464,-#_07e420f3dd56871d9cf7587febc54cf5p@chr4:24208460..24208464, -
1.84e-34FFCP PHASE1:Hg19::chr8:143814432..143814436,-#_07e420f3dd56871d9cf7587febc54cf5p@chr8:143814432..143814436, -
1.84e-34FFCP PHASE2:Hg19::chr7:55053540..55053550,+#_07e420f3dd56871d9cf7587febc54cf5p@chr7:55053540..55053550, +
1.84e-34FFCP PHASE1:Hg19::chr4:24232569..24232574,-#_07e420f3dd56871d9cf7587febc54cf5p@chr4:24232569..24232574, -
2.58e-34FFCP PHASE2:Hg19::chr7:98822527..98822533,+#_41605380495fff3d869da4630bcc4a03p@chr7:98822527..98822533, +
2.58e-34FFCP PHASE2:Hg19::chr2:173374596..173374600,+#_41605380495fff3d869da4630bcc4a03p@chr2:173374596..173374600, +
2.58e-34FFCP PHASE1:Hg19::chr7:98822527..98822533,+#_41605380495fff3d869da4630bcc4a03p@chr7:98822527..98822533, +
2.58e-34FFCP PHASE1:Hg19::chr2:173374596..173374600,+#_41605380495fff3d869da4630bcc4a03p@chr2:173374596..173374600, +
3.61e-34FFCP PHASE1:Hg19::chr1:183178134..183178138,+#_a0c846dac9e8422476b42df7e762f2d0p@chr1:183178134..183178138, +
3.61e-34FFCP PHASE2:Hg19::chr1:183178134..183178138,+#_a0c846dac9e8422476b42df7e762f2d0p@chr1:183178134..183178138, +

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