UBERON:0000970: Difference between revisions
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|located_in= | |located_in= | ||
|name=eye | |name=eye | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0002104 | |part_of=UBERON:0002104 | ||
Latest revision as of 17:12, 12 September 2014
| Name: | eye | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "An organ that detects light." UBERON:cjm, Wikipedia:Eye | ||
| Xrefs: |
| ||
| Synonyms: |
"light-detecting organ" RELATED [] "photoreceptor" BROAD [] "visual apparatus" RELATED [EV:0100336] | ||
| Comments: | Usage notes: This class encompasses a variety of light-detecting structures from different phyla with no implication of homology, from the compound insect eye to the vertebrate camera-type eye (distinct classes are provided for each). Structure notes: Note that whilst this is classified as an organ, it is in fact more of a unit composed of different structures: in Drosophila, it includes the interommatidial bristle as a part; we consider here the vertebrate eye to include the eyeball/eye proper as a part, with the eye having as parts (when present): eyelids, conjuctiva, | ||
| Alt_id: | UBERON:FBbt_00004508-FMA_54448-MA_0000261-MIAA_0000140-XAO_0000179-ZFA_0000107 | ||
| Subset: |
functional_classification major_organ organ_slim uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000020(sense organ) |
|---|---|
| part_of: | UBERON:0002104(visual system) |
Children
| is a: | UBERON:0000047 (simple eye) |
|---|---|
| part of: | UBERON:0005388 (photoreceptor array),UBERON:0005389 (transparent eye structure),UBERON:0007625 (pigment epithelium of eye),FF:0010054 (human eye - fetal sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10030-101E3 (retina, adult, pool1)
- 10054-101G9 (eye, fetal, donor1)
- 10268-104D7 (eye - vitreous humor, donor1)
- 10269-104D8
- 10270-104D9
- 10271-104E1
- 10272-104E2 (eye - muscle inferior rectus, donor1)
- 10296-104G8
- 10297-104G9 (eye - muscle superior, donor2)
- 10298-104H1 (eye - muscle lateral, donor2)
... further results Mouse (Mus musculus)
- 10030-101E3 (retina, adult, pool1)
- 10054-101G9 (eye, fetal, donor1)
- 10268-104D7 (eye - vitreous humor, donor1)
- 10269-104D8
- 10270-104D9
- 10271-104E1
- 10272-104E2 (eye - muscle inferior rectus, donor1)
- 10296-104G8
- 10297-104G9 (eye - muscle superior, donor2)
- 10298-104H1 (eye - muscle lateral, donor2)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000970 (eye), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.31e-86 | FFCP PHASE1:Mm9::chr17:31818106..31818119,+#_6ebe97cbb151b6a21ff99eebc0683341 | p@chr17:31818106..31818119, + |
| 1.31e-86 | FFCP PHASE1:Mm9::chr11:3622192..3622225,-#_6ebe97cbb151b6a21ff99eebc0683341 | p3@Osbp2 |
| 1.31e-86 | FFCP PHASE2:Mm9::chr17:31818263..31818276,+#_6ebe97cbb151b6a21ff99eebc0683341 | p@chr17:31818263..31818276, + |
| 1.31e-86 | FFCP PHASE1:Mm9::chr11:77532391..77532408,-#_6ebe97cbb151b6a21ff99eebc0683341 | p@chr11:77532391..77532408, - |
| 1.31e-86 | FFCP PHASE1:Mm9::chr4:133799669..133799683,+#_6ebe97cbb151b6a21ff99eebc0683341 | p1@E130218I03Rik |
| 1.31e-86 | FFCP PHASE2:Mm9::chr17:31815126..31815139,-#_6ebe97cbb151b6a21ff99eebc0683341 | p@chr17:31815126..31815139, - |
| 1.31e-86 | FFCP PHASE1:Mm9::chr17:31815126..31815139,-#_6ebe97cbb151b6a21ff99eebc0683341 | p@chr17:31815126..31815139, - |
| 1.31e-86 | FFCP PHASE2:Mm9::chr10:67364011..67364018,-#_6ebe97cbb151b6a21ff99eebc0683341 | p5@Zfp365 |
| 1.31e-86 | FFCP PHASE2:Mm9::chr4:133799669..133799683,+#_6ebe97cbb151b6a21ff99eebc0683341 | p1@E130218I03Rik |
| 1.31e-86 | FFCP PHASE2:Mm9::chr14:118451218..118451221,-#_6ebe97cbb151b6a21ff99eebc0683341 | p4@Dct |
| 1.31e-86 | FFCP PHASE2:Mm9::chr11:3622163..3622187,-#_6ebe97cbb151b6a21ff99eebc0683341 | p8@Osbp2 |
| 1.31e-86 | FFCP PHASE1:Mm9::chr10:127668442..127668453,+#_6ebe97cbb151b6a21ff99eebc0683341 | p@chr10:127668442..127668453, + |
| 1.31e-86 | FFCP PHASE2:Mm9::chr17:31818106..31818119,+#_6ebe97cbb151b6a21ff99eebc0683341 | p@chr17:31818106..31818119, + |
| 1.31e-86 | FFCP PHASE1:Mm9::chr11:77532283..77532316,-#_6ebe97cbb151b6a21ff99eebc0683341 | p@chr11:77532283..77532316, - |
| 1.31e-86 | FFCP PHASE1:Mm9::chr17:31817987..31818013,+#_6ebe97cbb151b6a21ff99eebc0683341 | p@chr17:31817987..31818013, + |
| 1.31e-86 | FFCP PHASE1:Mm9::chr14:118451218..118451221,-#_6ebe97cbb151b6a21ff99eebc0683341 | p4@Dct |
| 1.31e-86 | FFCP PHASE1:Mm9::chr17:31818263..31818276,+#_6ebe97cbb151b6a21ff99eebc0683341 | p@chr17:31818263..31818276, + |
| 1.31e-86 | FFCP PHASE2:Mm9::chr11:77532391..77532408,-#_6ebe97cbb151b6a21ff99eebc0683341 | p@chr11:77532391..77532408, - |
| 1.31e-86 | FFCP PHASE2:Mm9::chr3:129525389..129525400,-#_6ebe97cbb151b6a21ff99eebc0683341 | p@chr3:129525389..129525400, - |
| 1.31e-86 | FFCP PHASE2:Mm9::chr9:89697580..89697585,-#_6ebe97cbb151b6a21ff99eebc0683341 | p1@Mir184 |
| 1.31e-86 | FFCP PHASE1:Mm9::chr3:129525389..129525400,-#_6ebe97cbb151b6a21ff99eebc0683341 | p@chr3:129525389..129525400, - |
| 1.31e-86 | FFCP PHASE1:Mm9::chr9:89697580..89697585,-#_6ebe97cbb151b6a21ff99eebc0683341 | p1@Mir184 |
| 1.31e-86 | FFCP PHASE2:Mm9::chr17:31817987..31818013,+#_6ebe97cbb151b6a21ff99eebc0683341 | p@chr17:31817987..31818013, + |
| 1.31e-86 | FFCP PHASE1:Mm9::chr2:90827760..90827769,+#_6ebe97cbb151b6a21ff99eebc0683341 | p6@Celf1 |
| 1.31e-86 | FFCP PHASE2:Mm9::chr11:77532283..77532316,-#_6ebe97cbb151b6a21ff99eebc0683341 | p@chr11:77532283..77532316, - |
| 1.31e-86 | FFCP PHASE1:Mm9::chr16:21743134..21743139,-#_6ebe97cbb151b6a21ff99eebc0683341 | p@chr16:21743134..21743139, - |
| 1.31e-86 | FFCP PHASE2:Mm9::chr16:21743134..21743139,-#_6ebe97cbb151b6a21ff99eebc0683341 | p@chr16:21743134..21743139, - |
| 1.31e-86 | FFCP PHASE2:Mm9::chr11:3622192..3622225,-#_6ebe97cbb151b6a21ff99eebc0683341 | p3@Osbp2 |
| 1.31e-86 | FFCP PHASE1:Mm9::chr10:67364011..67364018,-#_6ebe97cbb151b6a21ff99eebc0683341 | p5@Zfp365 |
| 1.31e-86 | FFCP PHASE2:Mm9::chr10:127668442..127668453,+#_6ebe97cbb151b6a21ff99eebc0683341 | p@chr10:127668442..127668453, + |
| 1.31e-86 | FFCP PHASE2:Mm9::chr2:90827760..90827769,+#_6ebe97cbb151b6a21ff99eebc0683341 | p6@Celf1 |
| 1.31e-86 | FFCP PHASE1:Mm9::chr11:3622163..3622187,-#_6ebe97cbb151b6a21ff99eebc0683341 | p8@Osbp2 |
| 3.94e-79 | FFCP PHASE1:Hg19::chr2:45169233..45169244,+#_48d94ef5e848a5ad5e6f5129a7550e88 | p10@SIX3 |
| 3.94e-79 | FFCP PHASE2:Hg19::chr2:45169233..45169244,+#_48d94ef5e848a5ad5e6f5129a7550e88 | p10@SIX3 |
| 2.3e-78 | FFCP PHASE2:Mm9::chr10:127668637..127668650,+#_6f5b0954fbf777ea9de596bcf7b09d5f | p3@LOC100504989, p3@Timeless |
| 2.3e-78 | FFCP PHASE2:Mm9::chr7:64675015..64675028,+#_6f5b0954fbf777ea9de596bcf7b09d5f | p@chr7:64675015..64675028, + |
| 2.3e-78 | FFCP PHASE1:Mm9::chr7:64675015..64675028,+#_6f5b0954fbf777ea9de596bcf7b09d5f | p@chr7:64675015..64675028, + |
| 2.3e-78 | FFCP PHASE1:Mm9::chr10:127668637..127668650,+#_6f5b0954fbf777ea9de596bcf7b09d5f | p3@LOC100504989, p3@Timeless |
| 2.82e-78 | FFCP PHASE1:Mm9::chr6:97891135..97891147,+#_55ed5a199a03b1abe53b1814bd42b045 | p@chr6:97891135..97891147, + |
| 2.82e-78 | FFCP PHASE2:Mm9::chr2:105509100..105509107,+#_55ed5a199a03b1abe53b1814bd42b045 | p6@Pax6 |
| 2.82e-78 | FFCP PHASE1:Mm9::chr2:105509100..105509107,+#_55ed5a199a03b1abe53b1814bd42b045 | p6@Pax6 |
| 2.82e-78 | FFCP PHASE2:Mm9::chr6:97891135..97891147,+#_55ed5a199a03b1abe53b1814bd42b045 | p@chr6:97891135..97891147, + |
| 3.46e-78 | FFCP PHASE1:Mm9::chr14:49498256..49498278,+#_413ad474d5e4eb080d4e367ec0497437 | p1@4933429O19Rik |
| 3.46e-78 | FFCP PHASE2:Mm9::chr14:49498256..49498278,+#_413ad474d5e4eb080d4e367ec0497437 | p1@4933429O19Rik |
| 4.97e-77 | FFCP PHASE1:Mm9::chr17:31818629..31818644,+#_8c68c2ad39b4567974f60f2741579a91 | p@chr17:31818629..31818644, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr1:38092538..38092550,+#_8c68c2ad39b4567974f60f2741579a91 | p@chr1:38092538..38092550, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:112698505..112698537,-#_8c68c2ad39b4567974f60f2741579a91 | p@chr5:112698505..112698537, - |
| 4.97e-77 | FFCP PHASE1:Mm9::chr3:129525405..129525428,-#_8c68c2ad39b4567974f60f2741579a91 | p1@Rrh |
| 4.97e-77 | FFCP PHASE1:Mm9::chr8:77582194..77582219,+#_8c68c2ad39b4567974f60f2741579a91 | p@chr8:77582194..77582219, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr10:93761330..93761358,-#_8c68c2ad39b4567974f60f2741579a91 | p1@Gm4792 |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:112698505..112698537,-#_8c68c2ad39b4567974f60f2741579a91 | p@chr5:112698505..112698537, - |
| 4.97e-77 | FFCP PHASE1:Mm9::chr1:65149656..65149674,-#_8c68c2ad39b4567974f60f2741579a91 | p2@Cryga |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:112692580..112692595,+#_8c68c2ad39b4567974f60f2741579a91 | p@chr5:112692580..112692595, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr10:127668480..127668491,+#_8c68c2ad39b4567974f60f2741579a91 | p@chr10:127668480..127668491, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:112688342..112688357,+#_8c68c2ad39b4567974f60f2741579a91 | p@chr5:112688342..112688357, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:112688342..112688357,+#_8c68c2ad39b4567974f60f2741579a91 | p@chr5:112688342..112688357, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr10:127668686..127668697,+#_8c68c2ad39b4567974f60f2741579a91 | p4@LOC100504989, p4@Timeless |
| 4.97e-77 | FFCP PHASE1:Mm9::chr17:31816584..31816600,+#_8c68c2ad39b4567974f60f2741579a91 | p@chr17:31816584..31816600, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr11:95705150..95705170,+#_8c68c2ad39b4567974f60f2741579a91 | p3@Gngt2 |
| 4.97e-77 | FFCP PHASE1:Mm9::chr1:152166537..152166579,+#_8c68c2ad39b4567974f60f2741579a91 | p1@Pdc |
| 4.97e-77 | FFCP PHASE2:Mm9::chr3:129525435..129525448,-#_8c68c2ad39b4567974f60f2741579a91 | p2@Rrh |
| 4.97e-77 | FFCP PHASE2:Mm9::chr17:31816584..31816600,+#_8c68c2ad39b4567974f60f2741579a91 | p@chr17:31816584..31816600, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:113506006..113506025,-#_8c68c2ad39b4567974f60f2741579a91 | p@chr5:113506006..113506025, - |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:112690963..112690994,+#_8c68c2ad39b4567974f60f2741579a91 | p@chr5:112690963..112690994, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr14:52730585..52730607,+#_8c68c2ad39b4567974f60f2741579a91 | p1@Rpgrip1 |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:112690963..112690994,+#_8c68c2ad39b4567974f60f2741579a91 | p@chr5:112690963..112690994, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr3:129525435..129525448,-#_8c68c2ad39b4567974f60f2741579a91 | p2@Rrh |
| 4.97e-77 | FFCP PHASE1:Mm9::chr1:65146997..65147021,-#_8c68c2ad39b4567974f60f2741579a91 | p@chr1:65146997..65147021, - |
| 4.97e-77 | FFCP PHASE1:Mm9::chr9:107964319..107964338,-#_8c68c2ad39b4567974f60f2741579a91 | p11@Rnf123 |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:112686483..112686494,+#_8c68c2ad39b4567974f60f2741579a91 | p@chr5:112686483..112686494, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr17:31818215..31818239,-#_8c68c2ad39b4567974f60f2741579a91 | p@chr17:31818215..31818239, - |
| 4.97e-77 | FFCP PHASE2:Mm9::chr6:115162924..115162933,+#_8c68c2ad39b4567974f60f2741579a91 | p@chr6:115162924..115162933, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:112692580..112692595,+#_8c68c2ad39b4567974f60f2741579a91 | p@chr5:112692580..112692595, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr7:29477874..29477889,+#_8c68c2ad39b4567974f60f2741579a91 | p6@Fbxo27 |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:113506190..113506202,-#_8c68c2ad39b4567974f60f2741579a91 | p@chr5:113506190..113506202, - |
| 4.97e-77 | FFCP PHASE1:Mm9::chr11:77532270..77532280,-#_8c68c2ad39b4567974f60f2741579a91 | p@chr11:77532270..77532280, - |
| 4.97e-77 | FFCP PHASE2:Mm9::chr15:36655026..36655032,+#_8c68c2ad39b4567974f60f2741579a91 | p@chr15:36655026..36655032, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr14:49501519..49501530,-#_8c68c2ad39b4567974f60f2741579a91 | p@chr14:49501519..49501530, - |
| 4.97e-77 | FFCP PHASE2:Mm9::chr1:152166537..152166579,+#_8c68c2ad39b4567974f60f2741579a91 | p1@Pdc |
| 4.97e-77 | FFCP PHASE1:Mm9::chr10:127668799..127668810,+#_8c68c2ad39b4567974f60f2741579a91 | p5@LOC100504989, p5@Timeless |
| 4.97e-77 | FFCP PHASE1:Mm9::chr17:31817947..31817965,+#_8c68c2ad39b4567974f60f2741579a91 | p@chr17:31817947..31817965, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:113504891..113504916,-#_8c68c2ad39b4567974f60f2741579a91 | p@chr5:113504891..113504916, - |
| 4.97e-77 | FFCP PHASE1:Mm9::chr15:36655026..36655032,+#_8c68c2ad39b4567974f60f2741579a91 | p@chr15:36655026..36655032, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:113507470..113507483,-#_8c68c2ad39b4567974f60f2741579a91 | p@chr5:113507470..113507483, - |
| 4.97e-77 | FFCP PHASE2:Mm9::chr3:129525452..129525463,-#_8c68c2ad39b4567974f60f2741579a91 | p3@Rrh |
| 4.97e-77 | FFCP PHASE1:Mm9::chr6:115162924..115162933,+#_8c68c2ad39b4567974f60f2741579a91 | p@chr6:115162924..115162933, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr3:129525452..129525463,-#_8c68c2ad39b4567974f60f2741579a91 | p3@Rrh |
| 4.97e-77 | FFCP PHASE2:Mm9::chr3:34488839..34488876,+#_8c68c2ad39b4567974f60f2741579a91 | p1@ENSMUST00000173365 |
| 4.97e-77 | FFCP PHASE2:Mm9::chr8:77582172..77582183,+#_8c68c2ad39b4567974f60f2741579a91 | p@chr8:77582172..77582183, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr17:31818629..31818644,+#_8c68c2ad39b4567974f60f2741579a91 | p@chr17:31818629..31818644, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr14:49501519..49501530,-#_8c68c2ad39b4567974f60f2741579a91 | p@chr14:49501519..49501530, - |
| 4.97e-77 | FFCP PHASE2:Mm9::chr6:85969237..85969247,+#_8c68c2ad39b4567974f60f2741579a91 | p@chr6:85969237..85969247, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:112686483..112686494,+#_8c68c2ad39b4567974f60f2741579a91 | p@chr5:112686483..112686494, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr1:65147201..65147212,-#_8c68c2ad39b4567974f60f2741579a91 | p@chr1:65147201..65147212, - |
| 4.97e-77 | FFCP PHASE2:Mm9::chr11:95705150..95705170,+#_8c68c2ad39b4567974f60f2741579a91 | p3@Gngt2 |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:113507470..113507483,-#_8c68c2ad39b4567974f60f2741579a91 | p@chr5:113507470..113507483, - |
| 4.97e-77 | FFCP PHASE2:Mm9::chr7:29477874..29477889,+#_8c68c2ad39b4567974f60f2741579a91 | p6@Fbxo27 |
| 4.97e-77 | FFCP PHASE2:Mm9::chr4:19208009..19208054,+#_8c68c2ad39b4567974f60f2741579a91 | p1@Cngb3 |
| 4.97e-77 | FFCP PHASE2:Mm9::chr10:127668686..127668697,+#_8c68c2ad39b4567974f60f2741579a91 | p4@LOC100504989, p4@Timeless |
| 4.97e-77 | FFCP PHASE1:Mm9::chr16:56204438..56204451,+#_8c68c2ad39b4567974f60f2741579a91 | p1@Impg2 |
