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{{UBERON
{{UBERON
|id=UBERON:0000489
|alt_id=UBERON:CARO_0000072-ZFA_0001490
|name=cavitated compound organ
|namespace=
|def="Compound organ that contains one or more macroscopic anatomical spaces." [CARO:MAH]
|xref=AAO:0010016;;AEO:0000072;;BILA:0000072;;CARO:0000072;;EHDAA2:0003072;;HAO:0000072;;TAO:0001490;;TGMA:0001857;;XAO:0003165;;ZFA:0001490
|is_a=UBERON:0003103
|synonym=
|comment=
|comment=
|alt_id=UBERON:CARO_0000072-ZFA_0001490
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Compound organ that contains one or more macroscopic anatomical spaces." [CARO:MAH]
|subset=organ_slim;;upper_level
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0000489
|is_a=UBERON:0003103
|is_obsolete=
|located_in=
|located_in=
|name=cavitated compound organ
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=organ_slim;;upper_level
|preceded_by=
|synonym=
|union_of=
|xref=AAO:0010016;;AEO:0000072;;BILA:0000072;;CARO:0000072;;EHDAA2:0003072;;HAO:0000072;;TAO:0001490;;TGMA:0001857;;XAO:0003165;;ZFA:0001490
}}
}}

Latest revision as of 17:10, 12 September 2014

Name:cavitated compound organ
Namespace:FANTOM
Definition:"Compound organ that contains one or more macroscopic anatomical spaces." [CARO:MAH]
Xrefs:
links:

AAO:0010016
AEO:0000072
BILA:0000072
CARO:0000072
EHDAA2:0003072
HAO:0000072
TAO:0001490
TGMA:0001857
XAO:0003165

ZFA:0001490
Alt_id: UBERON:CARO_0000072-ZFA_0001490
Subset: organ_slim
upper_level

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0003103(compound organ)



Children

is a:UBERON:0001255 (urinary bladder),UBERON:0002113 (kidney),UBERON:0002240 (spinal cord)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000489 (cavitated compound organ), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.65e-72FFCP PHASE2:Hg19::chr10:102495147..102495159,+#_deb6f0cdb25a51e4f6c816a919b7ebe9p4@PAX2
2.65e-72FFCP PHASE1:Hg19::chr10:102495147..102495159,+#_deb6f0cdb25a51e4f6c816a919b7ebe9p4@PAX2
8.44e-61FFCP PHASE2:Hg19::chr10:102505954..102505973,+#_1f7a4622ff07f48edcf2895344aea486p3@PAX2
8.44e-61FFCP PHASE1:Hg19::chr10:102505954..102505973,+#_1f7a4622ff07f48edcf2895344aea486p3@PAX2
1.18e-58FFCP PHASE1:Hg19::chr2:693380..693398,+#_07b2ed43ad3f0be60cab7189b14ab044p@chr2:693380..693398, +
1.18e-58FFCP PHASE2:Hg19::chr2:693380..693398,+#_07b2ed43ad3f0be60cab7189b14ab044p@chr2:693380..693398, +
2.07e-58FFCP PHASE2:Mm9::chr6:52175944..52175955,-#_f359117c62b3f30f71ce0d2a7ff2f243p@chr6:52175944..52175955, -
2.07e-58FFCP PHASE1:Mm9::chr6:52175944..52175955,-#_f359117c62b3f30f71ce0d2a7ff2f243p@chr6:52175944..52175955, -
1.02e-55FFCP PHASE2:Hg19::chr10:102505327..102505344,+#_f3f0635e80ac49b276644966ae999f87p1@PAX2
1.02e-55FFCP PHASE1:Hg19::chr10:102505327..102505344,+#_f3f0635e80ac49b276644966ae999f87p1@PAX2
7.13e-55FFCP PHASE1:Hg19::chr7:27219833..27219845,-#_ca25a023378a280a37453635a68ef989p7@HOXA10
7.13e-55FFCP PHASE2:Hg19::chr7:27219833..27219845,-#_ca25a023378a280a37453635a68ef989p7@HOXA10
2.46e-53FFCP PHASE2:Hg19::chr10:102505493..102505546,+#_2d4f1f8ea76cd74aa1b4ad6cb392dbb0p2@PAX2
2.46e-53FFCP PHASE1:Hg19::chr10:102505493..102505546,+#_2d4f1f8ea76cd74aa1b4ad6cb392dbb0p2@PAX2
2.56e-53FFCP PHASE1:Mm9::chr2:74542680..74542705,+#_7a408da7c5f5c140c007a6e798e99178p6@Hoxd8
2.56e-53FFCP PHASE2:Mm9::chr2:74542680..74542705,+#_7a408da7c5f5c140c007a6e798e99178p6@Hoxd8
6.92e-53FFCP PHASE2:Hg19::chr9:133986782..133986794,+#_d56b99a476ed036f1a9eee65f744b6a4p4@AIF1L
6.92e-53FFCP PHASE1:Hg19::chr9:133986782..133986794,+#_d56b99a476ed036f1a9eee65f744b6a4p4@AIF1L
2.32e-52FFCP PHASE2:Hg19::chr1:81001398..81001426,+#_1fb25f136569d9e8c81b8e74ac23f659p1@ENST00000418041, p1@ENST00000443104
2.32e-52FFCP PHASE1:Hg19::chr1:81001398..81001426,+#_1fb25f136569d9e8c81b8e74ac23f659p1@ENST00000418041, p1@ENST00000443104
3.45e-51FFCP PHASE1:Hg19::chr15:66420804..66420837,-#_3a9a80c6d0dbaf617e3a669ee5a7ba52p4@MEGF11
3.45e-51FFCP PHASE2:Hg19::chr15:66420804..66420837,-#_3a9a80c6d0dbaf617e3a669ee5a7ba52p4@MEGF11
2.97e-49FFCP PHASE1:Mm9::chr2:74542589..74542602,+#_f043614321bc2588d3f7719a2042612cp8@Hoxd8
2.97e-49FFCP PHASE2:Mm9::chr2:74542589..74542602,+#_f043614321bc2588d3f7719a2042612cp8@Hoxd8
1.81e-48FFCP PHASE2:Mm9::chr11:96132523..96132538,+#_52abcbef38144afc678a52b57999f279p3@Hoxb9
1.81e-48FFCP PHASE1:Mm9::chr11:96132523..96132538,+#_52abcbef38144afc678a52b57999f279p3@Hoxb9
2.05e-48FFCP PHASE1:Mm9::chr19:44831390..44831414,+#_88f86ee6f576ae6840fac355f7f86d06p1@Pax2
2.05e-48FFCP PHASE2:Mm9::chr19:44831390..44831414,+#_88f86ee6f576ae6840fac355f7f86d06p1@Pax2
2.74e-46FFCP PHASE1:Hg19::chr9:119741711..119741743,-#_6915e889449bd78ebe4664fce9dcd959p@chr9:119741711..119741743, -
2.74e-46FFCP PHASE2:Hg19::chr9:119741711..119741743,-#_6915e889449bd78ebe4664fce9dcd959p@chr9:119741711..119741743, -
3.84e-46FFCP PHASE1:Hg19::chr18:3456189..3456200,+#_aff59a4cb35650473b04b97f37d9e169p@chr18:3456189..3456200, +
3.84e-46FFCP PHASE2:Hg19::chr18:3456189..3456200,+#_aff59a4cb35650473b04b97f37d9e169p@chr18:3456189..3456200, +
3.3e-45FFCP PHASE2:Mm9::chr19:44821192..44821202,+#_917cefaf6c33e311413add5ef86516a0p@chr19:44821192..44821202, +
3.3e-45FFCP PHASE1:Mm9::chr19:44824107..44824111,-#_917cefaf6c33e311413add5ef86516a0p@chr19:44824107..44824111, -
3.3e-45FFCP PHASE2:Mm9::chr19:44824107..44824111,-#_917cefaf6c33e311413add5ef86516a0p@chr19:44824107..44824111, -
3.3e-45FFCP PHASE1:Mm9::chr19:44821192..44821202,+#_917cefaf6c33e311413add5ef86516a0p@chr19:44821192..44821202, +
1.62e-43FFCP PHASE1:Mm9::chr2:24331116..24331125,-#_b93f19c51d6ca0070df09e3c326632f3p2@Pax8
1.62e-43FFCP PHASE2:Mm9::chr2:24331116..24331125,-#_b93f19c51d6ca0070df09e3c326632f3p2@Pax8
1.8e-42FFCP PHASE2:Mm9::chr11:96144050..96144065,+#_c79b5ced2b64ebbee7dbefb877dbde22p5@Hoxb8
1.8e-42FFCP PHASE1:Mm9::chr11:96144050..96144065,+#_c79b5ced2b64ebbee7dbefb877dbde22p5@Hoxb8
1.93e-42FFCP PHASE1:Hg19::chr7:7606139..7606151,-#_042efa1882e0172a146b3510e425ee8ap@chr7:7606139..7606151, -
1.93e-42FFCP PHASE2:Hg19::chr7:7606139..7606151,-#_042efa1882e0172a146b3510e425ee8ap@chr7:7606139..7606151, -
1.61e-41FFCP PHASE2:Mm9::chr10:3291561..3291580,+#_a3e5ed35eef59444dd349c49101a378fp@chr10:3291561..3291580, +
1.61e-41FFCP PHASE1:Mm9::chr10:3291561..3291580,+#_a3e5ed35eef59444dd349c49101a378fp@chr10:3291561..3291580, +
3.51e-41FFCP PHASE1:Mm9::chr19:44821149..44821161,+#_cc1c6e9acb693dafa03b2993dbde5123p@chr19:44821149..44821161, +
3.51e-41FFCP PHASE2:Mm9::chr19:44821149..44821161,+#_cc1c6e9acb693dafa03b2993dbde5123p@chr19:44821149..44821161, +
3.51e-41FFCP PHASE1:Mm9::chr19:44899724..44899728,+#_cc1c6e9acb693dafa03b2993dbde5123p@chr19:44899724..44899728, +
3.51e-41FFCP PHASE2:Mm9::chr19:44899724..44899728,+#_cc1c6e9acb693dafa03b2993dbde5123p@chr19:44899724..44899728, +
4.24e-41FFCP PHASE2:Hg19::chr2:177016336..177016350,+#_5bd73a03f412e8c0db51eb1ff399dd2cp1@HOXD4
4.24e-41FFCP PHASE1:Hg19::chr2:177016336..177016350,+#_5bd73a03f412e8c0db51eb1ff399dd2cp1@HOXD4
2.03e-40FFCP PHASE2:Hg19::chr10:102505552..102505563,+#_514090f6a09884624ec6a633f72b5eeep5@PAX2
2.03e-40FFCP PHASE1:Hg19::chr10:102505552..102505563,+#_514090f6a09884624ec6a633f72b5eeep5@PAX2
7.09e-40FFCP PHASE2:Mm9::chr11:96133231..96133247,+#_0f502b4f3f0ff449f6a8e08ec8695831p@chr11:96133231..96133247, +
7.09e-40FFCP PHASE1:Mm9::chr11:96133231..96133247,+#_0f502b4f3f0ff449f6a8e08ec8695831p@chr11:96133231..96133247, +
2.09e-39FFCP PHASE2:Mm9::chr8:107148422..107148433,+#_a0aa528590af62762c6d6a7ee2f29eb8p@chr8:107148422..107148433, +
2.09e-39FFCP PHASE1:Mm9::chr8:107148422..107148433,+#_a0aa528590af62762c6d6a7ee2f29eb8p@chr8:107148422..107148433, +
3.57e-39FFCP PHASE1:Hg19::chr14:57960456..57960478,-#_7012fbe89c42fbe9d0bdc33412218663p2@C14orf105
3.57e-39FFCP PHASE2:Hg19::chr14:57960456..57960478,-#_7012fbe89c42fbe9d0bdc33412218663p2@C14orf105
4.69e-39FFCP PHASE1:Mm9::chr2:74535796..74535808,+#_33f78349c1606afd43f151b9e44cbc64p3@Hoxd9
4.69e-39FFCP PHASE2:Mm9::chr2:74535796..74535808,+#_33f78349c1606afd43f151b9e44cbc64p3@Hoxd9
4.89e-39FFCP PHASE2:Hg19::chr10:102495136..102495146,+#_de5b5fa49ad7c9185fc9b8702408583fp8@PAX2
4.89e-39FFCP PHASE1:Hg19::chr10:102495136..102495146,+#_de5b5fa49ad7c9185fc9b8702408583fp8@PAX2
8.14e-39FFCP PHASE2:Hg19::chr1:1100457..1100470,+#_8a3e7fafc39c3664e1c4f0493168ed6ap@chr1:1100457..1100470, +
8.14e-39FFCP PHASE1:Hg19::chr1:1100457..1100470,+#_8a3e7fafc39c3664e1c4f0493168ed6ap@chr1:1100457..1100470, +
8.57e-39FFCP PHASE1:Mm9::chr16:88563264..88563271,-#_498b3dae34a45ac1de9198aafd9e00e7p@chr16:88563264..88563271, -
8.57e-39FFCP PHASE2:Mm9::chr16:88563264..88563271,-#_498b3dae34a45ac1de9198aafd9e00e7p@chr16:88563264..88563271, -
1.08e-38FFCP PHASE2:Mm9::chr11:96146086..96146100,+#_d0a7c855a0581b69933e6c6c2399a684p@chr11:96146086..96146100, +
1.08e-38FFCP PHASE1:Mm9::chr11:96146086..96146100,+#_d0a7c855a0581b69933e6c6c2399a684p@chr11:96146086..96146100, +
2.14e-38FFCP PHASE1:Mm9::chr19:44821081..44821112,+#_8e471b2b14b04aa07267ef4c4c7c7683p@chr19:44821081..44821112, +
2.14e-38FFCP PHASE2:Mm9::chr19:44821081..44821112,+#_8e471b2b14b04aa07267ef4c4c7c7683p@chr19:44821081..44821112, +
2.33e-38FFCP PHASE2:Mm9::chr10:50689167..50689171,+#_9d99bf8f4cfbbe9d4ee329f583bf21fap@chr10:50689167..50689171, +
2.33e-38FFCP PHASE1:Mm9::chr10:50689167..50689171,+#_9d99bf8f4cfbbe9d4ee329f583bf21fap@chr10:50689167..50689171, +
2.75e-38FFCP PHASE1:Mm9::chr5:24755801..24755819,+#_ae25893f84400c12b5451f5b50868285p@chr5:24755801..24755819, +
2.75e-38FFCP PHASE2:Mm9::chr5:24755801..24755819,+#_ae25893f84400c12b5451f5b50868285p@chr5:24755801..24755819, +
3.25e-38FFCP PHASE1:Mm9::chr19:59532611..59532623,+#_7a67da7304bc5af0f1efcad1594a13e4p@chr19:59532611..59532623, +
3.25e-38FFCP PHASE2:Mm9::chr19:59532611..59532623,+#_7a67da7304bc5af0f1efcad1594a13e4p@chr19:59532611..59532623, +
3.83e-38FFCP PHASE1:Hg19::chr17:46692603..46692621,-#_41ab18e17234d30e606bcaf458603568p6@HOXB8
3.83e-38FFCP PHASE2:Hg19::chr17:46692603..46692621,-#_41ab18e17234d30e606bcaf458603568p6@HOXB8
9.63e-38FFCP PHASE1:Mm9::chr16:88563303..88563315,-#_545f5641efb758cec2e182ca5c9921b4p5@Cldn8
9.63e-38FFCP PHASE2:Mm9::chr16:88563303..88563315,-#_545f5641efb758cec2e182ca5c9921b4p5@Cldn8
1.84e-37FFCP PHASE2:Mm9::chr4:44956599..44956663,+#_32af7a50421600cde0e9be3ce6b8afbbp1@ENSMUST00000154177
1.84e-37FFCP PHASE1:Mm9::chr4:44956599..44956663,+#_32af7a50421600cde0e9be3ce6b8afbbp1@ENSMUST00000154177
2.14e-37FFCP PHASE2:Mm9::chr2:74517725..74517738,+#_6277aee94fd5fbf6ec5182327e192c85p5@Hoxd11
2.14e-37FFCP PHASE1:Mm9::chr2:74517725..74517738,+#_6277aee94fd5fbf6ec5182327e192c85p5@Hoxd11
3.16e-37FFCP PHASE2:Mm9::chr2:74560109..74560131,+#_4c43bafb04deaeea883b082707dd6bc3p1@Hoxd4
3.16e-37FFCP PHASE1:Mm9::chr2:74560109..74560131,+#_4c43bafb04deaeea883b082707dd6bc3p1@Hoxd4
3.58e-37FFCP PHASE2:Mm9::chr10:79277411..79277429,+#_7ea0b1fb235147dbfab1ea0f1a3abc86p@chr10:79277411..79277429, +
3.58e-37FFCP PHASE2:Mm9::chr1:89952042..89952053,+#_7ea0b1fb235147dbfab1ea0f1a3abc86p2@LOC100048662, p2@LOC100048744, p2@Ugt1a10
3.58e-37FFCP PHASE1:Mm9::chr10:51915118..51915138,-#_7ea0b1fb235147dbfab1ea0f1a3abc86p4@Ros1
3.58e-37FFCP PHASE1:Mm9::chr8:118959620..118959632,-#_7ea0b1fb235147dbfab1ea0f1a3abc86p@chr8:118959620..118959632, -
3.58e-37FFCP PHASE2:Mm9::chr19:17554168..17554181,+#_7ea0b1fb235147dbfab1ea0f1a3abc86p@chr19:17554168..17554181, +
3.58e-37FFCP PHASE2:Mm9::chr10:50622895..50622905,+#_7ea0b1fb235147dbfab1ea0f1a3abc86p@chr10:50622895..50622905, +
3.58e-37FFCP PHASE1:Mm9::chr19:17554168..17554181,+#_7ea0b1fb235147dbfab1ea0f1a3abc86p@chr19:17554168..17554181, +
3.58e-37FFCP PHASE1:Mm9::chr5:5694436..5694447,-#_7ea0b1fb235147dbfab1ea0f1a3abc86p7@Steap2
3.58e-37FFCP PHASE1:Mm9::chr7:47891824..47891827,-#_7ea0b1fb235147dbfab1ea0f1a3abc86p@chr7:47891824..47891827, -
3.58e-37FFCP PHASE1:Mm9::chr7:126785928..126785945,-#_7ea0b1fb235147dbfab1ea0f1a3abc86p3@uc009jll.1
3.58e-37FFCP PHASE2:Mm9::chr10:51915118..51915138,-#_7ea0b1fb235147dbfab1ea0f1a3abc86p4@Ros1
3.58e-37FFCP PHASE1:Mm9::chr1:89952042..89952053,+#_7ea0b1fb235147dbfab1ea0f1a3abc86p2@LOC100048662, p2@LOC100048744, p2@Ugt1a10
3.58e-37FFCP PHASE2:Mm9::chr7:31244771..31244782,+#_7ea0b1fb235147dbfab1ea0f1a3abc86p2@Nphs1
3.58e-37FFCP PHASE1:Mm9::chr10:50622895..50622905,+#_7ea0b1fb235147dbfab1ea0f1a3abc86p@chr10:50622895..50622905, +

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