Personal tools

UBERON:0000474: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0000474
|alt_id=UBERON:CARO_0000028-FBbt_00004864-FBbt_00007011-FMA_45663-MA_0000381-MIAA_0000028-XAO_0000156-XAO_0003005-ZFA_0000303
|name=female reproductive system
|namespace=
|def="The organs of the female reproductive system." [Wikipedia:Female_genitalia]
|xref=BTO:0000083;;EFO:0000969;;EHDAA:8116;;EHDAA2:0000506;;EMAPA:17959;;EV:0100110;;FBbt:00004864;;FMA:45663;;GAID:364;;HAO:0000324;;http://upload.wikimedia.org/wikipedia/commons/thumb/6/68/Scheme_female_reproductive_system-en.svg/200px-Scheme_female_reproductive_system-en.svg.png;;MA:0000381;;MESH:A.05.360.319;;MIAA:0000028;;ncithesaurus:Female_Reproductive_System;;OpenCyc:Mx4rvVipTZwpEbGdrcN5Y29ycA;;TGMA:0000635;;VHOG:0000726;;WBbt:0006748;;XAO:0000156
|is_a=UBERON:0000990
|synonym="female genital system" RELATED [];;"female genitalia" RELATED [];;"female organism genitalia" EXACT [OBOL:automatic];;"female organism reproductive system" EXACT [OBOL:automatic];;"female reproductive tract" RELATED [MA:0000381];;"genitalia of female organism" EXACT [OBOL:automatic];;"gynaecological tissue" RELATED [BTO:0000083];;"reproductive system of female organism" EXACT [OBOL:automatic];;"systema genitale femininum" RELATED [BTO:0000083]
|comment=
|comment=
|alt_id=UBERON:CARO_0000028-FBbt_00004864-FBbt_00007011-FMA_45663-MA_0000381-MIAA_0000028-XAO_0000156-XAO_0003005-ZFA_0000303
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="The organs of the female reproductive system." [Wikipedia:Female_genitalia]
|subset=uberon_slim
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0000474
|is_a=UBERON:0000990 ;;UBERON:0014404
|is_obsolete=
|located_in=
|located_in=
|name=female reproductive system
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0003100
|part_of=UBERON:0003100
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=uberon_slim
|preceded_by=
|synonym="female genital system" RELATED [];;"female genitalia" RELATED [];;"female organism genitalia" EXACT [OBOL:automatic];;"female organism reproductive system" EXACT [OBOL:automatic];;"female reproductive tract" RELATED [MA:0000381];;"genitalia of female organism" EXACT [OBOL:automatic];;"gynaecological tissue" RELATED [BTO:0000083];;"reproductive system of female organism" EXACT [OBOL:automatic];;"systema genitale femininum" RELATED [BTO:0000083]
|union_of=
|xref=BTO:0000083;;EFO:0000969;;EHDAA2:0000506;;EHDAA:8116;;EMAPA:17959;;EV:0100110;;FBbt:00004864;;FMA:45663;;GAID:364;;HAO:0000324;;http://upload.wikimedia.org/wikipedia/commons/thumb/6/68/Scheme_female_reproductive_system-en.svg/200px-Scheme_female_reproductive_system-en.svg.png;;MA:0000381;;MESH:A.05.360.319;;MIAA:0000028;;ncithesaurus:Female_Reproductive_System;;OpenCyc:Mx4rvVipTZwpEbGdrcN5Y29ycA;;TGMA:0000635;;VHOG:0000726;;WBbt:0006748;;XAO:0000156
}}
}}

Latest revision as of 17:09, 12 September 2014

Name:female reproductive system
Namespace:FANTOM
Definition:"The organs of the female reproductive system." [Wikipedia:Female_genitalia]
Xrefs:
links:

BTO:0000083
EFO:0000969
EHDAA2:0000506
EHDAA:8116
EMAPA:17959
EV:0100110
FBbt:00004864
FMA:45663
GAID:364
HAO:0000324
[ 200px-Scheme_female_reproductive_system-en.svg.png 200px-Scheme_female_reproductive_system-en.svg.png]
MA:0000381
MESH:A.05.360.319
MIAA:0000028
ncithesaurus:Female_Reproductive_System
OpenCyc:Mx4rvVipTZwpEbGdrcN5Y29ycA
TGMA:0000635
VHOG:0000726
WBbt:0006748

XAO:0000156
Synonyms: "female genital system" RELATED []
"female genitalia" RELATED []
"female organism genitalia" EXACT [OBOL:automatic]
"female organism reproductive system" EXACT [OBOL:automatic]
"female reproductive tract" RELATED [MA:0000381]
"genitalia of female organism" EXACT [OBOL:automatic]
"gynaecological tissue" RELATED [BTO:0000083]
"reproductive system of female organism" EXACT [OBOL:automatic]
"systema genitale femininum" RELATED [BTO:0000083]
Alt_id: UBERON:CARO_0000028-FBbt_00004864-FBbt_00007011-FMA_45663-MA_0000381-MIAA_0000028-XAO_0000156-XAO_0003005-ZFA_0000303
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000990(reproductive system),UBERON:0014404(female anatomical structure)
part_of:UBERON:0003100(female organism)



Children

disjoint from:UBERON:0000079 (male reproductive system)
part of:UBERON:0000992 (female gonad),UBERON:0000993 (oviduct),UBERON:0001987 (placenta),UBERON:0003134 (female reproductive organ),UBERON:0003975 (internal female genitalia),UBERON:0005056 (external female genitalia),UBERON:0006834 (uterus or analog)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000474 (female reproductive system), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.7e-67FFCP PHASE2:Mm9::chr3:79594253..79594277,-#_160c6f35958814a85ab9d821d3a2f806p@chr3:79594253..79594277, -
1.7e-67FFCP PHASE1:Mm9::chr3:79594253..79594277,-#_160c6f35958814a85ab9d821d3a2f806p@chr3:79594253..79594277, -
6.4e-66FFCP PHASE2:Mm9::chr10:5636678..5636725,-#_50c7d781d3a06a25de49e902e51c0410p6@Esr1
6.4e-66FFCP PHASE1:Mm9::chr10:5636678..5636725,-#_50c7d781d3a06a25de49e902e51c0410p6@Esr1
2.03e-56FFCP PHASE1:Mm9::chr9:8900409..8900425,+#_6189882efa64889523e88a2550dd239fp2@Pgr
2.03e-56FFCP PHASE2:Mm9::chr9:8900409..8900425,+#_6189882efa64889523e88a2550dd239fp2@Pgr
7.54e-53FFCP PHASE1:Mm9::chr9:8900490..8900502,+#_15b0157eaa376823a0db1c1e14f9309ep4@Pgr
7.54e-53FFCP PHASE2:Mm9::chr9:8900490..8900502,+#_15b0157eaa376823a0db1c1e14f9309ep4@Pgr
9.14e-50FFCP PHASE2:Mm9::chr9:8900563..8900574,+#_0e8e7d96eac06a7322f5fa955b2e5b8cp5@Pgr
9.14e-50FFCP PHASE1:Mm9::chr9:8900563..8900574,+#_0e8e7d96eac06a7322f5fa955b2e5b8cp5@Pgr
1.11e-49FFCP PHASE1:Mm9::chr14:41844272..41844285,-#_6cbe06c214b2139d39ccf962dfdc75eap@chr14:41844272..41844285, -
1.11e-49FFCP PHASE2:Mm9::chr14:41844272..41844285,-#_6cbe06c214b2139d39ccf962dfdc75eap@chr14:41844272..41844285, -
2.91e-47FFCP PHASE1:Mm9::chr10:5636336..5636347,-#_e3bc5143245ef6b028fad4b109134474p9@Esr1
2.91e-47FFCP PHASE2:Mm9::chr10:5636336..5636347,-#_e3bc5143245ef6b028fad4b109134474p9@Esr1
6.0e-44FFCP PHASE2:Mm9::chr9:98857712..98857715,-#_12f6cd06b9b177969b05178a920cef7ap@chr9:98857712..98857715, -
6.0e-44FFCP PHASE1:Mm9::chr9:98857712..98857715,-#_12f6cd06b9b177969b05178a920cef7ap@chr9:98857712..98857715, -
8.42e-44FFCP PHASE2:Mm9::chr10:5634855..5634866,-#_2e4ad071ed5422ee2d963ccbc645f36ap@chr10:5634855..5634866, -
8.42e-44FFCP PHASE1:Mm9::chr10:5634855..5634866,-#_2e4ad071ed5422ee2d963ccbc645f36ap@chr10:5634855..5634866, -
9.04e-44FFCP PHASE2:Mm9::chr9:8899828..8899855,+#_9b3067acc4023a0c290400ebb7aaeef7p3@Pgr
9.04e-44FFCP PHASE1:Mm9::chr9:8899828..8899855,+#_9b3067acc4023a0c290400ebb7aaeef7p3@Pgr
2.02e-40FFCP PHASE2:Mm9::chr10:97030695..97030725,+#_10cb8fde4f0afe8935dde0bd6babe6e3p@chr10:97030695..97030725, +
2.02e-40FFCP PHASE1:Mm9::chr10:97030695..97030725,+#_10cb8fde4f0afe8935dde0bd6babe6e3p@chr10:97030695..97030725, +
3.75e-39FFCP PHASE1:Mm9::chr19:28635465..28635477,-#_ddd64a4610054aa30718e799f3029496p@chr19:28635465..28635477, -
3.75e-39FFCP PHASE2:Mm9::chr18:78259566..78259574,+#_ddd64a4610054aa30718e799f3029496p@chr18:78259566..78259574, +
3.75e-39FFCP PHASE2:Mm9::chr19:28635465..28635477,-#_ddd64a4610054aa30718e799f3029496p@chr19:28635465..28635477, -
3.75e-39FFCP PHASE1:Mm9::chr3:103705733..103705744,+#_ddd64a4610054aa30718e799f3029496p9@Ptpn22
3.75e-39FFCP PHASE1:Mm9::chr18:78259566..78259574,+#_ddd64a4610054aa30718e799f3029496p@chr18:78259566..78259574, +
3.75e-39FFCP PHASE1:Mm9::chr19:28635507..28635515,-#_ddd64a4610054aa30718e799f3029496p@chr19:28635507..28635515, -
3.75e-39FFCP PHASE2:Mm9::chr19:28635507..28635515,-#_ddd64a4610054aa30718e799f3029496p@chr19:28635507..28635515, -
3.75e-39FFCP PHASE1:Mm9::chr10:5484221..5484225,-#_ddd64a4610054aa30718e799f3029496p@chr10:5484221..5484225, -
3.75e-39FFCP PHASE2:Mm9::chr13:19715202..19715209,+#_ddd64a4610054aa30718e799f3029496p4@Sfrp4
3.75e-39FFCP PHASE2:Mm9::chr10:5484221..5484225,-#_ddd64a4610054aa30718e799f3029496p@chr10:5484221..5484225, -
3.75e-39FFCP PHASE2:Mm9::chr3:103705733..103705744,+#_ddd64a4610054aa30718e799f3029496p9@Ptpn22
3.75e-39FFCP PHASE1:Mm9::chr13:19715202..19715209,+#_ddd64a4610054aa30718e799f3029496p4@Sfrp4
5.81e-39FFCP PHASE1:Mm9::chr6:97777273..97777296,+#_9124538114b3ceef2a32a38fe4a84825p@chr6:97777273..97777296, +
5.81e-39FFCP PHASE2:Mm9::chr6:97777273..97777296,+#_9124538114b3ceef2a32a38fe4a84825p@chr6:97777273..97777296, +
1.3e-37FFCP PHASE1:Mm9::chr9:8900459..8900489,+#_020633c530e01cc10ad4dbc2ef66cde3p1@Pgr
1.3e-37FFCP PHASE2:Mm9::chr9:8900459..8900489,+#_020633c530e01cc10ad4dbc2ef66cde3p1@Pgr
3.31e-35FFCP PHASE1:Mm9::chr10:5386949..5386954,-#_d78e23eac9279b5c9127f85e5cf31df0p@chr10:5386949..5386954, -
3.31e-35FFCP PHASE2:Mm9::chr10:5386949..5386954,-#_d78e23eac9279b5c9127f85e5cf31df0p@chr10:5386949..5386954, -
5.09e-35FFCP PHASE2:Mm9::chr7:54276659..54276671,+#_8806cc5c35fa8762c4c898084b9527afp@chr7:54276659..54276671, +
5.09e-35FFCP PHASE1:Mm9::chr10:5483083..5483095,-#_8806cc5c35fa8762c4c898084b9527afp@chr10:5483083..5483095, -
5.09e-35FFCP PHASE2:Mm9::chr6:48857675..48857680,+#_8806cc5c35fa8762c4c898084b9527afp10@Abp1
5.09e-35FFCP PHASE1:Mm9::chr7:54276659..54276671,+#_8806cc5c35fa8762c4c898084b9527afp@chr7:54276659..54276671, +
5.09e-35FFCP PHASE1:Mm9::chr6:48857675..48857680,+#_8806cc5c35fa8762c4c898084b9527afp10@Abp1
5.09e-35FFCP PHASE2:Mm9::chr10:5483083..5483095,-#_8806cc5c35fa8762c4c898084b9527afp@chr10:5483083..5483095, -
9.69e-35FFCP PHASE2:Mm9::chr7:96675672..96675683,-#_7de8610b682d9c5d1bc57ed28a809f19p6@Prss23
9.69e-35FFCP PHASE1:Mm9::chr7:96675672..96675683,-#_7de8610b682d9c5d1bc57ed28a809f19p6@Prss23
1.33e-31FFCP PHASE2:Mm9::chr6:65094976..65094993,-#_a169343b74806a3a4032e57088218bb9p4@Hpgds
1.33e-31FFCP PHASE1:Mm9::chr2:49577301..49577323,+#_a169343b74806a3a4032e57088218bb9p@chr2:49577301..49577323, +
1.33e-31FFCP PHASE2:Mm9::chr5:87212132..87212143,-#_a169343b74806a3a4032e57088218bb9p@chr5:87212132..87212143, -
1.33e-31FFCP PHASE1:Mm9::chr4:88526110..88526132,-#_a169343b74806a3a4032e57088218bb9p1@Ifne
1.33e-31FFCP PHASE1:Mm9::chr5:87212132..87212143,-#_a169343b74806a3a4032e57088218bb9p@chr5:87212132..87212143, -
1.33e-31FFCP PHASE2:Mm9::chr4:88526110..88526132,-#_a169343b74806a3a4032e57088218bb9p1@Ifne
1.33e-31FFCP PHASE2:Mm9::chr9:8752254..8752260,-#_a169343b74806a3a4032e57088218bb9p@chr9:8752254..8752260, -
1.33e-31FFCP PHASE2:Mm9::chr2:49577301..49577323,+#_a169343b74806a3a4032e57088218bb9p@chr2:49577301..49577323, +
1.33e-31FFCP PHASE2:Mm9::chr19:24200299..24200336,-#_a169343b74806a3a4032e57088218bb9p@chr19:24200299..24200336, -
1.33e-31FFCP PHASE1:Mm9::chr6:65094976..65094993,-#_a169343b74806a3a4032e57088218bb9p4@Hpgds
1.33e-31FFCP PHASE1:Mm9::chr9:8752254..8752260,-#_a169343b74806a3a4032e57088218bb9p@chr9:8752254..8752260, -
1.33e-31FFCP PHASE1:Mm9::chr19:24200299..24200336,-#_a169343b74806a3a4032e57088218bb9p@chr19:24200299..24200336, -
1.59e-31FFCP PHASE2:Mm9::chr7:127288800..127288806,-#_50d673879041bc1843845d6d19498e5bp1@Zp2
1.59e-31FFCP PHASE1:Mm9::chr7:127288800..127288806,-#_50d673879041bc1843845d6d19498e5bp1@Zp2
5.76e-31FFCP PHASE1:Mm9::chr7:96676045..96676058,-#_62a8167c2bab80653c9579cd81e753e7p5@Prss23
5.76e-31FFCP PHASE2:Mm9::chr7:96676045..96676058,-#_62a8167c2bab80653c9579cd81e753e7p5@Prss23
6.64e-31FFCP PHASE2:Mm9::chr10:5527049..5527053,-#_6c43f8357fc29cb1de91747248152156p@chr10:5527049..5527053, -
6.64e-31FFCP PHASE1:Mm9::chr10:5527049..5527053,-#_6c43f8357fc29cb1de91747248152156p@chr10:5527049..5527053, -
8.81e-31FFCP PHASE1:Mm9::chr10:116587456..116587469,-#_d9bfcf7f342705cc5414a22b4777bcefp@chr10:116587456..116587469, -
8.81e-31FFCP PHASE2:Mm9::chr10:116587456..116587469,-#_d9bfcf7f342705cc5414a22b4777bcefp@chr10:116587456..116587469, -
1.17e-30FFCP PHASE1:Mm9::chr4:35105498..35105509,-#_baf66aa59028de60d05726abddf41b2ep@chr4:35105498..35105509, -
1.17e-30FFCP PHASE2:Mm9::chr4:35105498..35105509,-#_baf66aa59028de60d05726abddf41b2ep@chr4:35105498..35105509, -
2.61e-30FFCP PHASE1:Mm9::chr6:52190656..52190667,-#_a917e0f6fcf4c57b3c8bee0f152dc1b9p7@Hoxa10
2.61e-30FFCP PHASE2:Mm9::chr6:52190656..52190667,-#_a917e0f6fcf4c57b3c8bee0f152dc1b9p7@Hoxa10
4.74e-30FFCP PHASE2:Mm9::chr11:98561479..98561520,+#_4fb7f1d542da8ba383eb114a0f5e1635p@chr11:98561479..98561520, +
4.74e-30FFCP PHASE1:Mm9::chr11:98561479..98561520,+#_4fb7f1d542da8ba383eb114a0f5e1635p@chr11:98561479..98561520, +
5.81e-30FFCP PHASE2:Mm9::chr3:105776708..105776727,+#_b133de534b54d8d261451dd3b6d60348p1@Ovgp1
5.81e-30FFCP PHASE1:Mm9::chr3:105776708..105776727,+#_b133de534b54d8d261451dd3b6d60348p1@Ovgp1
8.84e-30FFCP PHASE2:Mm9::chr7:150952861..150952867,-#_8106acdf40b4fabb895a7858f5bb86f7p4@Mrgprg
8.84e-30FFCP PHASE2:Mm9::chr2:131680870..131680891,-#_8106acdf40b4fabb895a7858f5bb86f7p@chr2:131680870..131680891, -
8.84e-30FFCP PHASE1:Mm9::chr1:4486594..4486612,-#_8106acdf40b4fabb895a7858f5bb86f7p6@Sox17
8.84e-30FFCP PHASE1:Mm9::chr10:21130385..21130393,-#_8106acdf40b4fabb895a7858f5bb86f7p@chr10:21130385..21130393, -
8.84e-30FFCP PHASE1:Mm9::chr11:46564064..46564079,+#_8106acdf40b4fabb895a7858f5bb86f7p2@Havcr1
8.84e-30FFCP PHASE1:Mm9::chr12:8339024..8339034,+#_8106acdf40b4fabb895a7858f5bb86f7p@chr12:8339024..8339034, +
8.84e-30FFCP PHASE2:Mm9::chr1:185455318..185455329,+#_8106acdf40b4fabb895a7858f5bb86f7p@chr1:185455318..185455329, +
8.84e-30FFCP PHASE2:Mm9::chr13:61036161..61036172,-#_8106acdf40b4fabb895a7858f5bb86f7p@chr13:61036161..61036172, -
8.84e-30FFCP PHASE1:Mm9::chr4:140462693..140462700,-#_8106acdf40b4fabb895a7858f5bb86f7p@chr4:140462693..140462700, -
8.84e-30FFCP PHASE2:Mm9::chr11:46564064..46564079,+#_8106acdf40b4fabb895a7858f5bb86f7p2@Havcr1
8.84e-30FFCP PHASE2:Mm9::chr6:121306890..121306895,+#_8106acdf40b4fabb895a7858f5bb86f7p11@Slc6a12
8.84e-30FFCP PHASE2:Mm9::chr13:27437553..27437554,+#_8106acdf40b4fabb895a7858f5bb86f7p3@Prl8a2
8.84e-30FFCP PHASE1:Mm9::chr6:121306890..121306895,+#_8106acdf40b4fabb895a7858f5bb86f7p11@Slc6a12
8.84e-30FFCP PHASE1:Mm9::chr2:124475078..124475084,+#_8106acdf40b4fabb895a7858f5bb86f7p@chr2:124475078..124475084, +
8.84e-30FFCP PHASE2:Mm9::chrX:51027816..51027821,+#_8106acdf40b4fabb895a7858f5bb86f7p2@4930502E18Rik
8.84e-30FFCP PHASE1:Mm9::chr14:14765101..14765107,+#_8106acdf40b4fabb895a7858f5bb86f7p1@ENSMUST00000159275, p1@uc007sgd.1
8.84e-30FFCP PHASE2:Mm9::chr14:14765101..14765107,+#_8106acdf40b4fabb895a7858f5bb86f7p1@ENSMUST00000159275, p1@uc007sgd.1
8.84e-30FFCP PHASE1:Mm9::chr13:20203373..20203384,+#_8106acdf40b4fabb895a7858f5bb86f7p22@Elmo1
8.84e-30FFCP PHASE2:Mm9::chr10:115614273..115614299,+#_8106acdf40b4fabb895a7858f5bb86f7p17@Ptprr
8.84e-30FFCP PHASE2:Mm9::chr5:112905373..112905419,+#_8106acdf40b4fabb895a7858f5bb86f7p@chr5:112905373..112905419, +
8.84e-30FFCP PHASE1:Mm9::chr7:150952890..150952901,-#_8106acdf40b4fabb895a7858f5bb86f7p2@Mrgprg
8.84e-30FFCP PHASE1:Mm9::chr10:115614273..115614299,+#_8106acdf40b4fabb895a7858f5bb86f7p17@Ptprr
8.84e-30FFCP PHASE2:Mm9::chr7:150952890..150952901,-#_8106acdf40b4fabb895a7858f5bb86f7p2@Mrgprg
8.84e-30FFCP PHASE1:Mm9::chr2:169512387..169512392,-#_8106acdf40b4fabb895a7858f5bb86f7p@chr2:169512387..169512392, -

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0000474&oldid=3277117"