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{{UBERON
{{UBERON
|id=UBERON:0000204
|name=ventral telencephalon
|namespace=
|def="Base region of the telencephalon." [GO:0021544, GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, GOC:mtg_15jun06, PMID:12626695]
|xref=BTO:0003401;;EFO:0003522;;ZFA:0000304
|is_a=UBERON:0000481;;UBERON:0004121
|synonym="area ventralis telencephali" EXACT [ZFA:0000304];;"subpallium" NARROW [BTO:0003401, GO:0021544, ZFA:0000304]
|comment=note that the term subpallium sometimes refers specifically to the avian structure
|alt_id=
|alt_id=
|disjoint_from=
|comment=AO notes: BTO term refers specifically to the avian structure
|union_of=
|created_by=cjm
|created_by=cjm
|obo_creation_date=2009-04-18T12:12:27Z
|def="Dorsal part (base region) of the telencephalon." [GO:0021544, GO_REF:0000021, ISBN10:0471888893, PMID:12626695]
|subset=developmental_classification
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0000204
|is_a=UBERON:0002791
|is_obsolete=
|located_in=
|located_in=
|name=ventral part of telencephalon
|namespace=FANTOM
|obo_creation_date=2009-04-18T12:12:27Z
|part_of=UBERON:0001893
|part_of=UBERON:0001893
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=developmental_classification
|preceded_by=
|synonym="area ventralis telencephali" EXACT [ZFA:0000304];;"subpallium" EXACT [GO:0021544, ZFA:0000304];;"subpallium" NARROW [BTO:0003401];;"ventral telencephalon" EXACT [ZFA:0000304]
|union_of=
|xref=BTO:0003401;;EFO:0003522;;TAO:0000304;;ZFA:0000304
}}
}}

Latest revision as of 17:08, 12 September 2014

Name:ventral part of telencephalon
Namespace:FANTOM
Definition:"Dorsal part (base region) of the telencephalon." [GO:0021544, GO_REF:0000021, ISBN10:0471888893, PMID:12626695]
Xrefs:
links:

BTO:0003401
EFO:0003522
TAO:0000304

ZFA:0000304
Synonyms: "area ventralis telencephali" EXACT [ZFA:0000304]
"subpallium" EXACT [GO:0021544, ZFA:0000304]
"subpallium" NARROW [BTO:0003401]
"ventral telencephalon" EXACT [ZFA:0000304]
Comments:AO notes: BTO term refers specifically to the avian structure
Subset: developmental_classification
Created by:cjm
Creation date:2009-04-18T12:12:27Z

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002791(regional part of telencephalon)
part_of:UBERON:0001893(telencephalon)



Children

part of:UBERON:0002435 (striatum)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000204 (ventral part of telencephalon), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.57e-195FFCP PHASE1:Hg19::chr18:47967428..47967437,-#_5d7020f3323519116bd04b0cc3497915p@chr18:47967428..47967437, -
2.57e-195FFCP PHASE2:Hg19::chr12:6031299..6031315,-#_5d7020f3323519116bd04b0cc3497915p@chr12:6031299..6031315, -
2.57e-195FFCP PHASE1:Hg19::chr2:152828264..152828299,-#_5d7020f3323519116bd04b0cc3497915p@chr2:152828264..152828299, -
2.57e-195FFCP PHASE2:Hg19::chr2:152828264..152828299,-#_5d7020f3323519116bd04b0cc3497915p@chr2:152828264..152828299, -
2.57e-195FFCP PHASE2:Hg19::chr18:47967428..47967437,-#_5d7020f3323519116bd04b0cc3497915p@chr18:47967428..47967437, -
2.57e-195FFCP PHASE1:Hg19::chr14:78638610..78638621,+#_5d7020f3323519116bd04b0cc3497915p@chr14:78638610..78638621, +
2.57e-195FFCP PHASE1:Hg19::chr1:31352916..31352926,-#_5d7020f3323519116bd04b0cc3497915p@chr1:31352916..31352926, -
2.57e-195FFCP PHASE2:Hg19::chr13:112726433..112726446,+#_5d7020f3323519116bd04b0cc3497915p@chr13:112726433..112726446, +
2.57e-195FFCP PHASE1:Hg19::chr12:6031299..6031315,-#_5d7020f3323519116bd04b0cc3497915p@chr12:6031299..6031315, -
2.57e-195FFCP PHASE2:Hg19::chr14:78638610..78638621,+#_5d7020f3323519116bd04b0cc3497915p@chr14:78638610..78638621, +
2.57e-195FFCP PHASE2:Hg19::chr1:31352916..31352926,-#_5d7020f3323519116bd04b0cc3497915p@chr1:31352916..31352926, -
2.57e-195FFCP PHASE1:Hg19::chr13:112726433..112726446,+#_5d7020f3323519116bd04b0cc3497915p@chr13:112726433..112726446, +
6.72e-157FFCP PHASE2:Hg19::chr2:127783377..127783391,+#_eacc4f8e9bd2b32066404e0644f853edp2@BC051739
6.72e-157FFCP PHASE1:Hg19::chr2:3853961..3853984,+#_eacc4f8e9bd2b32066404e0644f853edp@chr2:3853961..3853984, +
6.72e-157FFCP PHASE1:Hg19::chr10:97261874..97261887,-#_eacc4f8e9bd2b32066404e0644f853edp@chr10:97261874..97261887, -
6.72e-157FFCP PHASE1:Hg19::chr15:35546024..35546035,-#_eacc4f8e9bd2b32066404e0644f853edp@chr15:35546024..35546035, -
6.72e-157FFCP PHASE1:Hg19::chr3:57807798..57807809,+#_eacc4f8e9bd2b32066404e0644f853edp@chr3:57807798..57807809, +
6.72e-157FFCP PHASE1:Hg19::chr17:19390211..19390223,+#_eacc4f8e9bd2b32066404e0644f853edp@chr17:19390211..19390223, +
6.72e-157FFCP PHASE1:Hg19::chr2:127783377..127783391,+#_eacc4f8e9bd2b32066404e0644f853edp2@BC051739
6.72e-157FFCP PHASE2:Hg19::chr17:19390211..19390223,+#_eacc4f8e9bd2b32066404e0644f853edp@chr17:19390211..19390223, +
6.72e-157FFCP PHASE2:Hg19::chr10:97261874..97261887,-#_eacc4f8e9bd2b32066404e0644f853edp@chr10:97261874..97261887, -
6.72e-157FFCP PHASE2:Hg19::chr2:3853961..3853984,+#_eacc4f8e9bd2b32066404e0644f853edp@chr2:3853961..3853984, +
6.72e-157FFCP PHASE2:Hg19::chr3:57807798..57807809,+#_eacc4f8e9bd2b32066404e0644f853edp@chr3:57807798..57807809, +
6.72e-157FFCP PHASE1:Hg19::chr20:9496091..9496106,+#_eacc4f8e9bd2b32066404e0644f853edp@chr20:9496091..9496106, +
6.72e-157FFCP PHASE2:Hg19::chr20:9496091..9496106,+#_eacc4f8e9bd2b32066404e0644f853edp@chr20:9496091..9496106, +
6.72e-157FFCP PHASE2:Hg19::chr15:35546024..35546035,-#_eacc4f8e9bd2b32066404e0644f853edp@chr15:35546024..35546035, -
1.5e-156FFCP PHASE1:Hg19::chr3:156008856..156008863,+#_bf2ed7af5233e401e340edd616e8f48bp23@KCNAB1
1.5e-156FFCP PHASE2:Hg19::chr3:156008856..156008863,+#_bf2ed7af5233e401e340edd616e8f48bp23@KCNAB1
3.35e-156FFCP PHASE1:Hg19::chr14:74893023..74893028,-#_4170ea73c4573ab46614555950810bddp6@SYNDIG1L
3.35e-156FFCP PHASE2:Hg19::chr14:74893023..74893028,-#_4170ea73c4573ab46614555950810bddp6@SYNDIG1L
6.94e-147FFCP PHASE1:Hg19::chr18:11752139..11752148,+#_9937c3f2e00c6a736818e561642671b5p27@GNAL
6.94e-147FFCP PHASE1:Hg19::chr18:47967443..47967452,-#_9937c3f2e00c6a736818e561642671b5p@chr18:47967443..47967452, -
6.94e-147FFCP PHASE1:Hg19::chrX:102663083..102663098,+#_9937c3f2e00c6a736818e561642671b5p@chrX:102663083..102663098, +
6.94e-147FFCP PHASE2:Hg19::chr18:47967443..47967452,-#_9937c3f2e00c6a736818e561642671b5p@chr18:47967443..47967452, -
6.94e-147FFCP PHASE2:Hg19::chr8:115354253..115354290,+#_9937c3f2e00c6a736818e561642671b5p@chr8:115354253..115354290, +
6.94e-147FFCP PHASE1:Hg19::chr5:35195732..35195740,-#_9937c3f2e00c6a736818e561642671b5p22@PRLR
6.94e-147FFCP PHASE2:Hg19::chr18:11752139..11752148,+#_9937c3f2e00c6a736818e561642671b5p27@GNAL
6.94e-147FFCP PHASE1:Hg19::chr4:71945904..71945922,+#_9937c3f2e00c6a736818e561642671b5p@chr4:71945904..71945922, +
6.94e-147FFCP PHASE1:Hg19::chr11:47617035..47617045,-#_9937c3f2e00c6a736818e561642671b5p@chr11:47617035..47617045, -
6.94e-147FFCP PHASE1:Hg19::chr12:51984146..51984157,+#_9937c3f2e00c6a736818e561642671b5p11@SCN8A
6.94e-147FFCP PHASE2:Hg19::chr4:71945904..71945922,+#_9937c3f2e00c6a736818e561642671b5p@chr4:71945904..71945922, +
6.94e-147FFCP PHASE2:Hg19::chr12:51984146..51984157,+#_9937c3f2e00c6a736818e561642671b5p11@SCN8A
6.94e-147FFCP PHASE1:Hg19::chr3:63542313..63542321,+#_9937c3f2e00c6a736818e561642671b5p@chr3:63542313..63542321, +
6.94e-147FFCP PHASE1:Hg19::chr13:42614200..42614212,+#_9937c3f2e00c6a736818e561642671b5p2@DGKH
6.94e-147FFCP PHASE2:Hg19::chr18:54898506..54898515,+#_9937c3f2e00c6a736818e561642671b5p@chr18:54898506..54898515, +
6.94e-147FFCP PHASE2:Hg19::chr17:7271778..7271784,+#_9937c3f2e00c6a736818e561642671b5p@chr17:7271778..7271784, +
6.94e-147FFCP PHASE2:Hg19::chr3:63542313..63542321,+#_9937c3f2e00c6a736818e561642671b5p@chr3:63542313..63542321, +
6.94e-147FFCP PHASE2:Hg19::chr13:42614200..42614212,+#_9937c3f2e00c6a736818e561642671b5p2@DGKH
6.94e-147FFCP PHASE2:Hg19::chr5:119669209..119669216,-#_9937c3f2e00c6a736818e561642671b5p5@ENST00000514240
6.94e-147FFCP PHASE2:Hg19::chr15:37777334..37777345,-#_9937c3f2e00c6a736818e561642671b5p@chr15:37777334..37777345, -
6.94e-147FFCP PHASE1:Hg19::chr15:37777334..37777345,-#_9937c3f2e00c6a736818e561642671b5p@chr15:37777334..37777345, -
6.94e-147FFCP PHASE2:Hg19::chrX:102663083..102663098,+#_9937c3f2e00c6a736818e561642671b5p@chrX:102663083..102663098, +
6.94e-147FFCP PHASE1:Hg19::chr18:54898506..54898515,+#_9937c3f2e00c6a736818e561642671b5p@chr18:54898506..54898515, +
6.94e-147FFCP PHASE1:Hg19::chr5:119669209..119669216,-#_9937c3f2e00c6a736818e561642671b5p5@ENST00000514240
6.94e-147FFCP PHASE1:Hg19::chr8:115354253..115354290,+#_9937c3f2e00c6a736818e561642671b5p@chr8:115354253..115354290, +
6.94e-147FFCP PHASE2:Hg19::chr11:47617035..47617045,-#_9937c3f2e00c6a736818e561642671b5p@chr11:47617035..47617045, -
6.94e-147FFCP PHASE2:Hg19::chr5:35195732..35195740,-#_9937c3f2e00c6a736818e561642671b5p22@PRLR
6.94e-147FFCP PHASE1:Hg19::chr17:7271778..7271784,+#_9937c3f2e00c6a736818e561642671b5p@chr17:7271778..7271784, +
2.79e-131FFCP PHASE2:Hg19::chr11:26497871..26497889,+#_5dc51972ee319d36831c57af37246e05p@chr11:26497871..26497889, +
2.79e-131FFCP PHASE2:Hg19::chr2:234227370..234227385,+#_5dc51972ee319d36831c57af37246e05p@chr2:234227370..234227385, +
2.79e-131FFCP PHASE1:Hg19::chr10:97261901..97261919,-#_5dc51972ee319d36831c57af37246e05p@chr10:97261901..97261919, -
2.79e-131FFCP PHASE1:Hg19::chr10:97261796..97261806,-#_5dc51972ee319d36831c57af37246e05p@chr10:97261796..97261806, -
2.79e-131FFCP PHASE1:Hg19::chr11:26497871..26497889,+#_5dc51972ee319d36831c57af37246e05p@chr11:26497871..26497889, +
2.79e-131FFCP PHASE1:Hg19::chr5:121648127..121648167,-#_5dc51972ee319d36831c57af37246e05p@chr5:121648127..121648167, -
2.79e-131FFCP PHASE2:Hg19::chr10:97261796..97261806,-#_5dc51972ee319d36831c57af37246e05p@chr10:97261796..97261806, -
2.79e-131FFCP PHASE1:Hg19::chr2:234227370..234227385,+#_5dc51972ee319d36831c57af37246e05p@chr2:234227370..234227385, +
2.79e-131FFCP PHASE2:Hg19::chr10:97261901..97261919,-#_5dc51972ee319d36831c57af37246e05p@chr10:97261901..97261919, -
2.79e-131FFCP PHASE1:Hg19::chr3:63428975..63428978,+#_5dc51972ee319d36831c57af37246e05p10@SYNPR
2.79e-131FFCP PHASE2:Hg19::chr5:121648127..121648167,-#_5dc51972ee319d36831c57af37246e05p@chr5:121648127..121648167, -
2.79e-131FFCP PHASE2:Hg19::chr3:63428975..63428978,+#_5dc51972ee319d36831c57af37246e05p10@SYNPR
3.91e-131FFCP PHASE1:Hg19::chr7:111424575..111424587,-#_aa1c17018bd8e5c85f2a734aea18e1eap9@DOCK4
3.91e-131FFCP PHASE1:Hg19::chr1:242372439..242372456,+#_aa1c17018bd8e5c85f2a734aea18e1eap1@ENST00000421878
3.91e-131FFCP PHASE2:Hg19::chr7:111424575..111424587,-#_aa1c17018bd8e5c85f2a734aea18e1eap9@DOCK4
3.91e-131FFCP PHASE2:Hg19::chr1:242372439..242372456,+#_aa1c17018bd8e5c85f2a734aea18e1eap1@ENST00000421878
5.46e-131FFCP PHASE1:Hg19::chr3:85007662..85007678,+#_13f18ccb576a79499843a608ca21c17ep8@CADM2
5.46e-131FFCP PHASE2:Hg19::chr3:85007662..85007678,+#_13f18ccb576a79499843a608ca21c17ep8@CADM2
5.46e-131FFCP PHASE2:Hg19::chr14:101123580..101123593,+#_13f18ccb576a79499843a608ca21c17ep1@LINC00523
5.46e-131FFCP PHASE1:Hg19::chr14:101123580..101123593,+#_13f18ccb576a79499843a608ca21c17ep1@LINC00523
5.46e-131FFCP PHASE2:Hg19::chr2:212989626..212989648,-#_13f18ccb576a79499843a608ca21c17ep@chr2:212989626..212989648, -
5.46e-131FFCP PHASE2:Hg19::chr19:1236637..1236645,-#_13f18ccb576a79499843a608ca21c17ep@chr19:1236637..1236645, -
5.46e-131FFCP PHASE1:Hg19::chr19:1236637..1236645,-#_13f18ccb576a79499843a608ca21c17ep@chr19:1236637..1236645, -
5.46e-131FFCP PHASE1:Hg19::chr2:212989626..212989648,-#_13f18ccb576a79499843a608ca21c17ep@chr2:212989626..212989648, -
1.07e-130FFCP PHASE2:Hg19::chr22:24828830..24828842,+#_674a22fd5b535a36dad37b3d3716f5e6p14@ADORA2A
1.07e-130FFCP PHASE1:Hg19::chr11:26495467..26495474,+#_674a22fd5b535a36dad37b3d3716f5e6p8@ANO3
1.07e-130FFCP PHASE2:Hg19::chr11:26495467..26495474,+#_674a22fd5b535a36dad37b3d3716f5e6p8@ANO3
1.07e-130FFCP PHASE1:Hg19::chr22:24828830..24828842,+#_674a22fd5b535a36dad37b3d3716f5e6p14@ADORA2A
4.07e-130FFCP PHASE1:Hg19::chr16:84027018..84027029,+#_e8d7e5e80a8feaf675774a333fca3a24p@chr16:84027018..84027029, +
4.07e-130FFCP PHASE2:Hg19::chr16:84027018..84027029,+#_e8d7e5e80a8feaf675774a333fca3a24p@chr16:84027018..84027029, +
5.62e-113FFCP PHASE1:Hg19::chr3:154147920..154147931,-#_c6593e308aa6a48af90220d0a560133bp3@GPR149
5.62e-113FFCP PHASE2:Hg19::chr3:154147920..154147931,-#_c6593e308aa6a48af90220d0a560133bp3@GPR149
5.62e-113FFCP PHASE1:Hg19::chr13:98995904..98995913,+#_c6593e308aa6a48af90220d0a560133bp@chr13:98995904..98995913, +
5.62e-113FFCP PHASE2:Hg19::chr13:98995904..98995913,+#_c6593e308aa6a48af90220d0a560133bp@chr13:98995904..98995913, +
7.5e-113FFCP PHASE2:Hg19::chrX:37765754..37765765,+#_296cf4d0ec840ec77dcba1f840b5a411p11@ENST00000449263
7.5e-113FFCP PHASE1:Hg19::chr11:80886203..80886231,+#_296cf4d0ec840ec77dcba1f840b5a411p@chr11:80886203..80886231, +
7.5e-113FFCP PHASE2:Hg19::chr11:80886203..80886231,+#_296cf4d0ec840ec77dcba1f840b5a411p@chr11:80886203..80886231, +
7.5e-113FFCP PHASE2:Hg19::chr6:12890045..12890049,+#_296cf4d0ec840ec77dcba1f840b5a411p@chr6:12890045..12890049, +
7.5e-113FFCP PHASE1:Hg19::chrX:37765754..37765765,+#_296cf4d0ec840ec77dcba1f840b5a411p11@ENST00000449263
7.5e-113FFCP PHASE1:Hg19::chr6:12890045..12890049,+#_296cf4d0ec840ec77dcba1f840b5a411p@chr6:12890045..12890049, +
1.0e-112FFCP PHASE1:Hg19::chr2:242171468..242171498,-#_699cf4ef1c935337c457511ca22bc343p@chr2:242171468..242171498, -
1.0e-112FFCP PHASE1:Hg19::chr2:7112752..7112770,+#_699cf4ef1c935337c457511ca22bc343p@chr2:7112752..7112770, +

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