UBERON:0000119: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 13: | Line 13: | ||
|located_in= | |located_in= | ||
|name=cell layer | |name=cell layer | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of= | ||
Latest revision as of 17:06, 12 September 2014
| Name: | cell layer |
|---|---|
| Namespace: | FANTOM |
| Definition: | "Portion of tissue, that consists of one or more layers of cells connected to each other by cell junctions" [UBERON:cjm] |
| Synonyms: |
"cell sheath" RELATED [] "layer of cells" EXACT [] |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000479(tissue) |
|---|
Children
| is a: | UBERON:0000483 (epithelium),UBERON:0003210 (blood-cerebrospinal fluid barrier),UBERON:0004061 (neural tube mantle layer) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10052-101G7 (aorta, adult, pool1)
- 10065-101I2 (skin, fetal, donor1)
- 10074-102A2 (skin, adult, donor1)
- 10190-103E1 (artery, adult)
- 10191-103E2 (vein, adult)
- 10216-103G9 (chicken embryo whole body, day01 (HH7 1-3 somites))
- 10217-103H1 (chicken embryo whole body, day01 (HH7 2-3 somites))
- 10252-104B9 (Ileum epithelium, pool1)
- 10253-104C1 (Ileum epithelium, pool2)
- 10254-104C2
... further results Mouse (Mus musculus)
- 10052-101G7 (aorta, adult, pool1)
- 10065-101I2 (skin, fetal, donor1)
- 10074-102A2 (skin, adult, donor1)
- 10190-103E1 (artery, adult)
- 10191-103E2 (vein, adult)
- 10216-103G9 (chicken embryo whole body, day01 (HH7 1-3 somites))
- 10217-103H1 (chicken embryo whole body, day01 (HH7 2-3 somites))
- 10252-104B9 (Ileum epithelium, pool1)
- 10253-104C1 (Ileum epithelium, pool2)
- 10254-104C2
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000119 (cell layer), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 4.79e-41 | FFCP PHASE2:Hg19::chr16:56672571..56672587,+#_10eceaaaef81e8bccef65e0199802aec | p2@MT1A |
| 4.79e-41 | FFCP PHASE1:Hg19::chr16:56672571..56672587,+#_10eceaaaef81e8bccef65e0199802aec | p2@MT1A |
| 9.16e-40 | FFCP PHASE2:Hg19::chr22:30792980..30793047,+#_b5f513149697939ff3469e8fd81d6673 | p1@SEC14L2 |
| 9.16e-40 | FFCP PHASE1:Hg19::chr22:30792980..30793047,+#_b5f513149697939ff3469e8fd81d6673 | p1@SEC14L2 |
| 5.53e-39 | FFCP PHASE1:Hg19::chr2:26205550..26205624,-#_2b0d6906a9a6383b8e4718b8ff6801f8 | p1@KIF3C |
| 5.53e-39 | FFCP PHASE2:Hg19::chr2:26205550..26205624,-#_2b0d6906a9a6383b8e4718b8ff6801f8 | p1@KIF3C |
| 8.24e-39 | FFCP PHASE1:Hg19::chr5:148521047..148521076,+#_42d06908320c239e7eb1d11042bec3a4 | p1@ABLIM3 |
| 8.24e-39 | FFCP PHASE2:Hg19::chr5:148521047..148521076,+#_42d06908320c239e7eb1d11042bec3a4 | p1@ABLIM3 |
| 4.98e-38 | FFCP PHASE2:Hg19::chr1:85930830..85930858,-#_6ab4c937c57020e3f4541e7a42bccaa4 | p1@DDAH1 |
| 4.98e-38 | FFCP PHASE1:Hg19::chr1:85930830..85930858,-#_6ab4c937c57020e3f4541e7a42bccaa4 | p1@DDAH1 |
| 1.6e-37 | FFCP PHASE1:Hg19::chrX:140271249..140271333,-#_4e41b1c96a0a9b79bb5e9abc62a498f3 | p1@LDOC1 |
| 1.6e-37 | FFCP PHASE2:Hg19::chrX:140271249..140271333,-#_4e41b1c96a0a9b79bb5e9abc62a498f3 | p1@LDOC1 |
| 2.25e-37 | FFCP PHASE1:Hg19::chrX:128977781..128977869,-#_7ff1c3ecab93b337dfbc41799b7e8ab0 | p1@ZDHHC9 |
| 2.25e-37 | FFCP PHASE2:Hg19::chrX:128977781..128977869,-#_7ff1c3ecab93b337dfbc41799b7e8ab0 | p1@ZDHHC9 |
| 3.58e-37 | FFCP PHASE1:Hg19::chr18:47088419..47088437,+#_656e279dbe47fcad915ad8a143407e30 | p1@LIPG |
| 3.58e-37 | FFCP PHASE2:Hg19::chr18:47088419..47088437,+#_656e279dbe47fcad915ad8a143407e30 | p1@LIPG |
| 3.85e-37 | FFCP PHASE2:Hg19::chr11:60691924..60691966,+#_fa30e16c374e8c55246c35f123b4b428 | p1@TMEM132A |
| 3.85e-37 | FFCP PHASE1:Hg19::chr11:60691924..60691966,+#_fa30e16c374e8c55246c35f123b4b428 | p1@TMEM132A |
| 5.45e-37 | FFCP PHASE1:Hg19::chr2:242498138..242498179,+#_3480476a626ca5647fe0739d41dc0afc | p1@BOK |
| 5.45e-37 | FFCP PHASE2:Hg19::chr2:242498138..242498179,+#_3480476a626ca5647fe0739d41dc0afc | p1@BOK |
| 5.72e-37 | FFCP PHASE2:Hg19::chr17:73389854..73389993,-#_9347f9f6b300ed4e9a76d8d046be471f | p2@GRB2 |
| 5.72e-37 | FFCP PHASE1:Hg19::chr17:73389854..73389993,-#_9347f9f6b300ed4e9a76d8d046be471f | p2@GRB2 |
| 8.47e-37 | FFCP PHASE2:Hg19::chr3:52001448..52001478,-#_f9aafe1e261531e383e88824a19f1fc9 | p2@PCBP4 |
| 8.47e-37 | FFCP PHASE1:Hg19::chr3:52001448..52001478,-#_f9aafe1e261531e383e88824a19f1fc9 | p2@PCBP4 |
| 1.09e-36 | FFCP PHASE1:Hg19::chrX:140271349..140271401,-#_596a6ddcdf283c2726c9adcc2faddbe3 | p2@LDOC1 |
| 1.09e-36 | FFCP PHASE2:Hg19::chrX:140271349..140271401,-#_596a6ddcdf283c2726c9adcc2faddbe3 | p2@LDOC1 |
| 2.33e-36 | FFCP PHASE1:Hg19::chr2:26205340..26205381,-#_af7b30affa811f37413245e05bd0d20a | p2@KIF3C |
| 2.33e-36 | FFCP PHASE2:Hg19::chr2:26205340..26205381,-#_af7b30affa811f37413245e05bd0d20a | p2@KIF3C |
| 2.51e-36 | FFCP PHASE2:Hg19::chr22:41697520..41697613,+#_f9e2db6dc62743d58bfc027a3807c8dc | p1@ZC3H7B |
| 2.51e-36 | FFCP PHASE1:Hg19::chr22:41697520..41697613,+#_f9e2db6dc62743d58bfc027a3807c8dc | p1@ZC3H7B |
| 3.17e-36 | FFCP PHASE2:Hg19::chr3:52001426..52001447,-#_3e6b2a776a5f85074e557e28c47482b1 | p3@PCBP4 |
| 3.17e-36 | FFCP PHASE1:Hg19::chr3:52001426..52001447,-#_3e6b2a776a5f85074e557e28c47482b1 | p3@PCBP4 |
| 1.54e-35 | FFCP PHASE1:Hg19::chr10:15413224..15413308,-#_ce188a85d1f4765d6b2fc01e84b4d8c9 | p2@FAM171A1 |
| 1.54e-35 | FFCP PHASE2:Hg19::chr10:15413224..15413308,-#_ce188a85d1f4765d6b2fc01e84b4d8c9 | p2@FAM171A1 |
| 2.28e-35 | FFCP PHASE1:Hg19::chr4:145567297..145567355,+#_6dcb8c2a8029021252a34ca282ace924 | p1@HHIP |
| 2.28e-35 | FFCP PHASE2:Hg19::chr4:145567297..145567355,+#_6dcb8c2a8029021252a34ca282ace924 | p1@HHIP |
| 2.77e-35 | FFCP PHASE2:Hg19::chr3:170136642..170136663,+#_af1b9ce73a9a7acbffe2c25bf782bebc | p1@CLDN11 |
| 2.77e-35 | FFCP PHASE1:Hg19::chr3:170136642..170136663,+#_af1b9ce73a9a7acbffe2c25bf782bebc | p1@CLDN11 |
| 3.3e-35 | FFCP PHASE1:Hg19::chr4:17513702..17513720,-#_77160d75c2316cd385ebb6183b1e8cba | p1@QDPR |
| 3.3e-35 | FFCP PHASE2:Hg19::chr4:17513702..17513720,-#_77160d75c2316cd385ebb6183b1e8cba | p1@QDPR |
| 6.13e-35 | FFCP PHASE1:Hg19::chr16:58534039..58534056,+#_bb3dd7544b9ce51a078554851c58dbbe | p1@NDRG4 |
| 6.13e-35 | FFCP PHASE2:Hg19::chr16:58534039..58534056,+#_bb3dd7544b9ce51a078554851c58dbbe | p1@NDRG4 |
| 2.05e-34 | FFCP PHASE2:Hg19::chr11:125366089..125366207,-#_e02f5fd48375b836ab8c8644d669a707 | p1@FEZ1 |
| 2.05e-34 | FFCP PHASE1:Hg19::chr11:125366089..125366207,-#_e02f5fd48375b836ab8c8644d669a707 | p1@FEZ1 |
| 3.07e-34 | FFCP PHASE1:Hg19::chrX:134166360..134166371,+#_5765a4733be42394579dc7f89f007985 | p2@FAM127A |
| 3.07e-34 | FFCP PHASE2:Hg19::chrX:134166360..134166371,+#_5765a4733be42394579dc7f89f007985 | p2@FAM127A |
| 3.55e-34 | FFCP PHASE2:Hg19::chr22:38669002..38669024,-#_eb283cff5f82241de616eaab45d379d0 | p1@TMEM184B |
| 3.55e-34 | FFCP PHASE1:Hg19::chr22:38669002..38669024,-#_eb283cff5f82241de616eaab45d379d0 | p1@TMEM184B |
| 4.58e-34 | FFCP PHASE1:Hg19::chr2:127864608..127864688,-#_662a826616c7a63a121e5a82bc51dd63 | p1@BIN1 |
| 4.58e-34 | FFCP PHASE2:Hg19::chr2:127864608..127864688,-#_662a826616c7a63a121e5a82bc51dd63 | p1@BIN1 |
| 4.75e-34 | FFCP PHASE1:Hg19::chr16:89989741..89989759,+#_aac97d8ed07ab75ff62d89fa4aaf469b | p1@TUBB3 |
| 4.75e-34 | FFCP PHASE2:Hg19::chr16:89989741..89989759,+#_aac97d8ed07ab75ff62d89fa4aaf469b | p1@TUBB3 |
| 5.18e-34 | FFCP PHASE1:Hg19::chr20:62327996..62328013,+#_7247bb01e243dc11a7e193a0fcf8c785 | p1@TNFRSF6B |
| 5.18e-34 | FFCP PHASE2:Hg19::chr20:62327996..62328013,+#_7247bb01e243dc11a7e193a0fcf8c785 | p1@TNFRSF6B |
| 5.83e-34 | FFCP PHASE1:Hg19::chr19:54412517..54412583,+#_32e5739b42452bed9f8871eeaf68ef37 | p1@CACNG7 |
| 5.83e-34 | FFCP PHASE2:Hg19::chr19:54412517..54412583,+#_32e5739b42452bed9f8871eeaf68ef37 | p1@CACNG7 |
| 6.77e-34 | FFCP PHASE2:Hg19::chr3:48130707..48130789,-#_f3359f65decc719e81520fefbf16940c | p4@MAP4 |
| 6.77e-34 | FFCP PHASE1:Hg19::chr3:48130707..48130789,-#_f3359f65decc719e81520fefbf16940c | p4@MAP4 |
| 6.98e-34 | FFCP PHASE1:Hg19::chr1:20812690..20812763,-#_f6ddfe23ae253a18cd33a0f39bdec1f1 | p1@CAMK2N1 |
| 6.98e-34 | FFCP PHASE2:Hg19::chr1:20812690..20812763,-#_f6ddfe23ae253a18cd33a0f39bdec1f1 | p1@CAMK2N1 |
| 7.1e-34 | FFCP PHASE2:Hg19::chr15:44487453..44487476,-#_b8bfe0fad7d0414fac3ffdff69461401 | p1@FRMD5 |
| 7.1e-34 | FFCP PHASE1:Hg19::chr15:44487453..44487476,-#_b8bfe0fad7d0414fac3ffdff69461401 | p1@FRMD5 |
| 7.38e-34 | FFCP PHASE1:Hg19::chr3:48130317..48130396,-#_0c9d39bce6441dc126d8ebe65a1d0411 | p1@MAP4 |
| 7.38e-34 | FFCP PHASE2:Hg19::chr3:48130317..48130396,-#_0c9d39bce6441dc126d8ebe65a1d0411 | p1@MAP4 |
| 1.04e-33 | FFCP PHASE1:Hg19::chr4:145567767..145567851,+#_c533dd61da023fcc3397d60d6362d76a | p2@HHIP |
| 1.04e-33 | FFCP PHASE2:Hg19::chr4:145567767..145567851,+#_c533dd61da023fcc3397d60d6362d76a | p2@HHIP |
| 1.1e-33 | FFCP PHASE2:Hg19::chrX:134166376..134166394,+#_aeea9698803872a86308e3c5d059a967 | p1@FAM127A |
| 1.1e-33 | FFCP PHASE1:Hg19::chrX:134166376..134166394,+#_aeea9698803872a86308e3c5d059a967 | p1@FAM127A |
| 1.3e-33 | FFCP PHASE1:Hg19::chr16:765092..765169,+#_81e346a25af6657a024e1d1a5777b4b8 | p1@METRN |
| 1.3e-33 | FFCP PHASE2:Hg19::chr16:765092..765169,+#_81e346a25af6657a024e1d1a5777b4b8 | p1@METRN |
| 2.62e-33 | FFCP PHASE1:Hg19::chr20:30310656..30310685,-#_c036e7731b57609858a77b945ebc32c7 | p1@BCL2L1 |
| 2.62e-33 | FFCP PHASE2:Hg19::chr20:30310656..30310685,-#_c036e7731b57609858a77b945ebc32c7 | p1@BCL2L1 |
| 2.64e-33 | FFCP PHASE1:Hg19::chr17:40118805..40118822,+#_d1700755df18079359a05c7a79779855 | p1@CNP |
| 2.64e-33 | FFCP PHASE2:Hg19::chr17:40118805..40118822,+#_d1700755df18079359a05c7a79779855 | p1@CNP |
| 3.45e-33 | FFCP PHASE2:Hg19::chr19:54411852..54411908,+#_dd443c543f7d59d3111d1f1d88231ba1 | p@chr19:54411852..54411908, + |
| 3.45e-33 | FFCP PHASE1:Hg19::chr19:54411852..54411908,+#_dd443c543f7d59d3111d1f1d88231ba1 | p@chr19:54411852..54411908, + |
| 5.04e-33 | FFCP PHASE1:Hg19::chr19:48281989..48282000,+#_7c7f4235f6fe96f0f1cb34b65a8a680c | p3@SEPW1 |
| 5.04e-33 | FFCP PHASE2:Hg19::chr19:48281989..48282000,+#_7c7f4235f6fe96f0f1cb34b65a8a680c | p3@SEPW1 |
| 5.07e-33 | FFCP PHASE2:Hg19::chr10:15413035..15413131,-#_c2c031cbc2424415df5f84a4f6c9d3e5 | p1@FAM171A1 |
| 5.07e-33 | FFCP PHASE1:Hg19::chr10:15413035..15413131,-#_c2c031cbc2424415df5f84a4f6c9d3e5 | p1@FAM171A1 |
| 6.43e-33 | FFCP PHASE1:Hg19::chr3:170139006..170139041,+#_e0d7b51186099bf4b57071e5644d7652 | p3@CLDN11 |
| 6.43e-33 | FFCP PHASE2:Hg19::chr3:170139006..170139041,+#_e0d7b51186099bf4b57071e5644d7652 | p3@CLDN11 |
| 7.01e-33 | FFCP PHASE1:Hg19::chr1:79472365..79472443,-#_1f75cce124d0a4a8d40448a5bb660d6e | p1@ELTD1 |
| 7.01e-33 | FFCP PHASE2:Hg19::chr1:79472365..79472443,-#_1f75cce124d0a4a8d40448a5bb660d6e | p1@ELTD1 |
| 7.85e-33 | FFCP PHASE2:Hg19::chr19:46105411..46105481,-#_8ba4b2e8346a702180e8669bcd9c5e9b | p1@GPR4, p2@OPA3 |
| 7.85e-33 | FFCP PHASE1:Hg19::chr19:46105411..46105481,-#_8ba4b2e8346a702180e8669bcd9c5e9b | p1@GPR4, p2@OPA3 |
| 7.9e-33 | FFCP PHASE2:Hg19::chr2:27718052..27718127,-#_7f2b84ed99e5b900ec254f1561b0a19f | p1@FNDC4 |
| 7.9e-33 | FFCP PHASE1:Hg19::chr2:27718052..27718127,-#_7f2b84ed99e5b900ec254f1561b0a19f | p1@FNDC4 |
| 8.08e-33 | FFCP PHASE1:Hg19::chr16:56651382..56651426,+#_d368a47b005a700553d0b0fa2d28da0d | p1@MT1L, p1@MT1M |
| 8.08e-33 | FFCP PHASE2:Hg19::chr16:56651382..56651426,+#_d368a47b005a700553d0b0fa2d28da0d | p1@MT1L, p1@MT1M |
| 8.99e-33 | FFCP PHASE1:Hg19::chr3:52001396..52001425,-#_633feca8d738796d4c888a7fe05167a0 | p4@PCBP4 |
| 8.99e-33 | FFCP PHASE2:Hg19::chr3:52001396..52001425,-#_633feca8d738796d4c888a7fe05167a0 | p4@PCBP4 |
| 1.07e-32 | FFCP PHASE1:Hg19::chr15:68871309..68871354,+#_5b0778ac97e7e2dce2378219f22da5d9 | p2@CORO2B |
| 1.07e-32 | FFCP PHASE2:Hg19::chr15:68871309..68871354,+#_5b0778ac97e7e2dce2378219f22da5d9 | p2@CORO2B |
| 1.46e-32 | FFCP PHASE2:Hg19::chr9:14314566..14314618,-#_d935bac1bfa3af62d078da13a5c86c5b | p1@NFIB |
| 1.46e-32 | FFCP PHASE1:Hg19::chr9:14314566..14314618,-#_d935bac1bfa3af62d078da13a5c86c5b | p1@NFIB |
| 2.39e-32 | FFCP PHASE1:Hg19::chr17:19265883..19265958,-#_55c028227b7f2e0eefe90fe9dd1700f7 | p1@B9D1 |
| 2.39e-32 | FFCP PHASE2:Hg19::chr17:19265883..19265958,-#_55c028227b7f2e0eefe90fe9dd1700f7 | p1@B9D1 |
| 2.53e-32 | FFCP PHASE2:Hg19::chr1:153581416..153581458,-#_6a0b8866da068cd9998d37668364adf3 | p4@S100A16 |
| 2.53e-32 | FFCP PHASE1:Hg19::chr1:153581416..153581458,-#_6a0b8866da068cd9998d37668364adf3 | p4@S100A16 |
