UBERON:0000078: Difference between revisions
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|id=UBERON:0000078
|name=mixed ectoderm/mesoderm/endoderm-derived structure
|namespace=
|def="An anatomical structure that develops from the ectoderm, mesoderm an...") |
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{{UBERON | {{UBERON | ||
|alt_id= | |alt_id= | ||
| | |comment=Grouping term for query purposes. Notes that the developmental relationships are being refined such that most structures should develop in whole from at most one layer, but may have contributions from multiple | ||
|created_by= | |created_by= | ||
| | |def="An anatomical structure that develops from the ectoderm, mesoderm and endoderm." [UBERON:cjm] | ||
|derives_from= | |derives_from= | ||
|develops_from=UBERON:0000924;;UBERON:0000925;;UBERON:0000926 | |develops_from=UBERON:0000924;;UBERON:0000925;;UBERON:0000926;;UBERON:0000924;;UBERON:0000925;;UBERON:0000926 | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0000078 | |||
|is_a=UBERON:0000077 ;;UBERON:0004121 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=mixed ectoderm/mesoderm/endoderm-derived structure | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of= | |part_of= | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|subset=grouping_class | |||
|synonym= | |||
|union_of= | |||
|xref= | |||
}} | }} | ||
Latest revision as of 17:05, 12 September 2014
| Name: | mixed ectoderm/mesoderm/endoderm-derived structure |
|---|---|
| Namespace: | FANTOM |
| Definition: | "An anatomical structure that develops from the ectoderm, mesoderm and endoderm." [UBERON:cjm] |
| Comments: | Grouping term for query purposes. Notes that the developmental relationships are being refined such that most structures should develop in whole from at most one layer, but may have contributions from multiple |
| Subset: | grouping_class |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000077(mixed endoderm/mesoderm-derived structure),UBERON:0004121(ectoderm-derived structure) |
|---|---|
| develops_from: | UBERON:0000924(ectoderm),UBERON:0000925(endoderm),UBERON:0000926(mesoderm),UBERON:0000924(ectoderm),UBERON:0000925(endoderm),UBERON:0000926(mesoderm) |
Children
| is a: | UBERON:0002244 (premaxilla),UBERON:0005620 (primary palate),UBERON:0005705 (primary palate mesenchyme),UBERON:0011628 (early premaxilla) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 11250-116E8 (Fibroblast - Pulmonary Artery, donor1)
- 11288-117A1 (Smooth Muscle Cells - Pulmonary Artery, donor1)
- 11365-117I6 (Smooth Muscle Cells - Pulmonary Artery, donor2)
- 11437-118H6 (Smooth Muscle Cells - Pulmonary Artery, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000078 (mixed ectoderm/mesoderm/endoderm-derived structure), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.55e-98 | FFCP PHASE1:Hg19::chr4:70707713..70707716,-#_1de47cf55311a5b003d958580c44f0c1 | p@chr4:70707713..70707716, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr8:90366581..90366594,-#_1de47cf55311a5b003d958580c44f0c1 | p@chr8:90366581..90366594, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr6:21648948..21648949,+#_1de47cf55311a5b003d958580c44f0c1 | p@chr6:21648948..21648949, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr4:70707713..70707716,-#_1de47cf55311a5b003d958580c44f0c1 | p@chr4:70707713..70707716, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr8:90366581..90366594,-#_1de47cf55311a5b003d958580c44f0c1 | p@chr8:90366581..90366594, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr6:21648948..21648949,+#_1de47cf55311a5b003d958580c44f0c1 | p@chr6:21648948..21648949, + |
| 2.74e-50 | FFCP PHASE1:Hg19::chr4:70707556..70707558,-#_315302c9ecde85b8b4c24c829951ebbe | p@chr4:70707556..70707558, - |
| 2.74e-50 | FFCP PHASE2:Hg19::chr4:70707556..70707558,-#_315302c9ecde85b8b4c24c829951ebbe | p@chr4:70707556..70707558, - |
| 4.52e-50 | FFCP PHASE2:Hg19::chr10:90749902..90749913,+#_fc75f50eea503431c035ba31c0fe8671 | p14@FAS |
| 4.52e-50 | FFCP PHASE1:Hg19::chr6:21666284..21666297,+#_fc75f50eea503431c035ba31c0fe8671 | p26@LINC00340 |
| 4.52e-50 | FFCP PHASE2:Hg19::chr3:158928407..158928414,+#_fc75f50eea503431c035ba31c0fe8671 | p@chr3:158928407..158928414, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chrX:23072856..23072859,-#_fc75f50eea503431c035ba31c0fe8671 | p@chrX:23072856..23072859, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chr8:120651826..120651840,-#_fc75f50eea503431c035ba31c0fe8671 | p@chr8:120651826..120651840, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chr10:90749902..90749913,+#_fc75f50eea503431c035ba31c0fe8671 | p14@FAS |
| 4.52e-50 | FFCP PHASE2:Hg19::chr6:21666284..21666297,+#_fc75f50eea503431c035ba31c0fe8671 | p26@LINC00340 |
| 4.52e-50 | FFCP PHASE2:Hg19::chr8:120651826..120651840,-#_fc75f50eea503431c035ba31c0fe8671 | p@chr8:120651826..120651840, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chr3:158928407..158928414,+#_fc75f50eea503431c035ba31c0fe8671 | p@chr3:158928407..158928414, + |
| 4.52e-50 | FFCP PHASE2:Hg19::chrX:23072856..23072859,-#_fc75f50eea503431c035ba31c0fe8671 | p@chrX:23072856..23072859, - |
| 3.61e-34 | FFCP PHASE2:Hg19::chr4:70707608..70707615,-#_cb524191e2c9f8c86fa0116d0645508c | p@chr4:70707608..70707615, - |
| 3.61e-34 | FFCP PHASE1:Hg19::chr4:70707608..70707615,-#_cb524191e2c9f8c86fa0116d0645508c | p@chr4:70707608..70707615, - |
| 5.04e-34 | FFCP PHASE1:Hg19::chr3:156258392..156258395,-#_4691d0c882be393e3a32d3be9f8a5d45 | p@chr3:156258392..156258395, - |
| 5.04e-34 | FFCP PHASE1:Hg19::chr4:70690584..70690589,+#_4691d0c882be393e3a32d3be9f8a5d45 | p@chr4:70690584..70690589, + |
| 5.04e-34 | FFCP PHASE1:Hg19::chr11:131614903..131614910,-#_4691d0c882be393e3a32d3be9f8a5d45 | p@chr11:131614903..131614910, - |
| 5.04e-34 | FFCP PHASE1:Hg19::chr17:76824975..76824978,-#_4691d0c882be393e3a32d3be9f8a5d45 | p@chr17:76824975..76824978, - |
| 5.04e-34 | FFCP PHASE2:Hg19::chr3:156258392..156258395,-#_4691d0c882be393e3a32d3be9f8a5d45 | p@chr3:156258392..156258395, - |
| 5.04e-34 | FFCP PHASE2:Hg19::chr4:70690584..70690589,+#_4691d0c882be393e3a32d3be9f8a5d45 | p@chr4:70690584..70690589, + |
| 5.04e-34 | FFCP PHASE2:Hg19::chr17:76824975..76824978,-#_4691d0c882be393e3a32d3be9f8a5d45 | p@chr17:76824975..76824978, - |
| 5.04e-34 | FFCP PHASE2:Hg19::chr11:131614903..131614910,-#_4691d0c882be393e3a32d3be9f8a5d45 | p@chr11:131614903..131614910, - |
| 7.05e-34 | FFCP PHASE2:Hg19::chr19:54466179..54466202,+#_54aaf8aaab320fdea4d4c6b5dff647ce | p1@CACNG8 |
| 7.05e-34 | FFCP PHASE1:Hg19::chr1:176668544..176668553,+#_54aaf8aaab320fdea4d4c6b5dff647ce | p@chr1:176668544..176668553, + |
| 7.05e-34 | FFCP PHASE1:Hg19::chr4:38147484..38147500,-#_54aaf8aaab320fdea4d4c6b5dff647ce | p@chr4:38147484..38147500, - |
| 7.05e-34 | FFCP PHASE2:Hg19::chr1:93043102..93043113,-#_54aaf8aaab320fdea4d4c6b5dff647ce | p@chr1:93043102..93043113, - |
| 7.05e-34 | FFCP PHASE2:Hg19::chr11:94587086..94587097,+#_54aaf8aaab320fdea4d4c6b5dff647ce | p19@AMOTL1 |
| 7.05e-34 | FFCP PHASE1:Hg19::chr6:119590894..119590904,-#_54aaf8aaab320fdea4d4c6b5dff647ce | p1@ENST00000406333 |
| 7.05e-34 | FFCP PHASE1:Hg19::chr7:18834859..18834879,-#_54aaf8aaab320fdea4d4c6b5dff647ce | p@chr7:18834859..18834879, - |
| 7.05e-34 | FFCP PHASE1:Hg19::chr20:48184812..48184818,-#_54aaf8aaab320fdea4d4c6b5dff647ce | p13@PTGIS |
| 7.05e-34 | FFCP PHASE2:Hg19::chrX:140904171..140904173,+#_54aaf8aaab320fdea4d4c6b5dff647ce | p@chrX:140904171..140904173, + |
| 7.05e-34 | FFCP PHASE1:Hg19::chr4:24645959..24645967,+#_54aaf8aaab320fdea4d4c6b5dff647ce | p@chr4:24645959..24645967, + |
| 7.05e-34 | FFCP PHASE2:Hg19::chr13:38136724..38136726,+#_54aaf8aaab320fdea4d4c6b5dff647ce | p@chr13:38136724..38136726, + |
| 7.05e-34 | FFCP PHASE1:Hg19::chr8:134047162..134047169,+#_54aaf8aaab320fdea4d4c6b5dff647ce | p@chr8:134047162..134047169, + |
| 7.05e-34 | FFCP PHASE2:Hg19::chr9:16059821..16059828,+#_54aaf8aaab320fdea4d4c6b5dff647ce | p@chr9:16059821..16059828, + |
| 7.05e-34 | FFCP PHASE1:Hg19::chr7:22687639..22687644,+#_54aaf8aaab320fdea4d4c6b5dff647ce | p@chr7:22687639..22687644, + |
| 7.05e-34 | FFCP PHASE1:Hg19::chr19:54466179..54466202,+#_54aaf8aaab320fdea4d4c6b5dff647ce | p1@CACNG8 |
| 7.05e-34 | FFCP PHASE2:Hg19::chr1:176668544..176668553,+#_54aaf8aaab320fdea4d4c6b5dff647ce | p@chr1:176668544..176668553, + |
| 7.05e-34 | FFCP PHASE1:Hg19::chr11:94587086..94587097,+#_54aaf8aaab320fdea4d4c6b5dff647ce | p19@AMOTL1 |
| 7.05e-34 | FFCP PHASE1:Hg19::chr13:38136724..38136726,+#_54aaf8aaab320fdea4d4c6b5dff647ce | p@chr13:38136724..38136726, + |
| 7.05e-34 | FFCP PHASE2:Hg19::chr7:18834859..18834879,-#_54aaf8aaab320fdea4d4c6b5dff647ce | p@chr7:18834859..18834879, - |
| 7.05e-34 | FFCP PHASE1:Hg19::chr1:93043102..93043113,-#_54aaf8aaab320fdea4d4c6b5dff647ce | p@chr1:93043102..93043113, - |
| 7.05e-34 | FFCP PHASE2:Hg19::chr4:38147484..38147500,-#_54aaf8aaab320fdea4d4c6b5dff647ce | p@chr4:38147484..38147500, - |
| 7.05e-34 | FFCP PHASE1:Hg19::chrX:140904171..140904173,+#_54aaf8aaab320fdea4d4c6b5dff647ce | p@chrX:140904171..140904173, + |
| 7.05e-34 | FFCP PHASE2:Hg19::chr8:134047162..134047169,+#_54aaf8aaab320fdea4d4c6b5dff647ce | p@chr8:134047162..134047169, + |
| 7.05e-34 | FFCP PHASE2:Hg19::chr6:119590894..119590904,-#_54aaf8aaab320fdea4d4c6b5dff647ce | p1@ENST00000406333 |
| 7.05e-34 | FFCP PHASE1:Hg19::chr9:16059821..16059828,+#_54aaf8aaab320fdea4d4c6b5dff647ce | p@chr9:16059821..16059828, + |
| 7.05e-34 | FFCP PHASE2:Hg19::chr20:48184812..48184818,-#_54aaf8aaab320fdea4d4c6b5dff647ce | p13@PTGIS |
| 7.05e-34 | FFCP PHASE2:Hg19::chr7:22687639..22687644,+#_54aaf8aaab320fdea4d4c6b5dff647ce | p@chr7:22687639..22687644, + |
| 7.05e-34 | FFCP PHASE2:Hg19::chr4:24645959..24645967,+#_54aaf8aaab320fdea4d4c6b5dff647ce | p@chr4:24645959..24645967, + |
| 5.56e-26 | FFCP PHASE1:Hg19::chr9:33797893..33797903,+#_e8a723433cd6ce4956dc18da9f0ff59f | p@chr9:33797893..33797903, + |
| 5.56e-26 | FFCP PHASE2:Hg19::chr9:33797893..33797903,+#_e8a723433cd6ce4956dc18da9f0ff59f | p@chr9:33797893..33797903, + |
| 7.14e-26 | FFCP PHASE2:Hg19::chr4:891819..891820,-#_730d85a5e8cb02ecf9b97b29e31ddf89 | p@chr4:891819..891820, - |
| 7.14e-26 | FFCP PHASE2:Hg19::chr8:123580995..123581003,-#_730d85a5e8cb02ecf9b97b29e31ddf89 | p@chr8:123580995..123581003, - |
| 7.14e-26 | FFCP PHASE1:Hg19::chr19:10218330..10218339,+#_730d85a5e8cb02ecf9b97b29e31ddf89 | p1@SNORD105 |
| 7.14e-26 | FFCP PHASE2:Hg19::chr17:61995172..61995199,-#_730d85a5e8cb02ecf9b97b29e31ddf89 | p@chr17:61995172..61995199, - |
| 7.14e-26 | FFCP PHASE2:Hg19::chr18:65175930..65175941,+#_730d85a5e8cb02ecf9b97b29e31ddf89 | p@chr18:65175930..65175941, + |
| 7.14e-26 | FFCP PHASE2:Hg19::chr2:73302288..73302299,-#_730d85a5e8cb02ecf9b97b29e31ddf89 | p13@RAB11FIP5 |
| 7.14e-26 | FFCP PHASE2:Hg19::chr19:15509437..15509442,-#_730d85a5e8cb02ecf9b97b29e31ddf89 | p@chr19:15509437..15509442, - |
| 7.14e-26 | FFCP PHASE2:Hg19::chr10:103040652..103040655,+#_730d85a5e8cb02ecf9b97b29e31ddf89 | p1@ENST00000492301 |
| 7.14e-26 | FFCP PHASE2:Hg19::chr6:34208414..34208429,+#_730d85a5e8cb02ecf9b97b29e31ddf89 | p16@HMGA1 |
| 7.14e-26 | FFCP PHASE1:Hg19::chr4:891819..891820,-#_730d85a5e8cb02ecf9b97b29e31ddf89 | p@chr4:891819..891820, - |
| 7.14e-26 | FFCP PHASE2:Hg19::chr19:10218330..10218339,+#_730d85a5e8cb02ecf9b97b29e31ddf89 | p1@SNORD105 |
| 7.14e-26 | FFCP PHASE1:Hg19::chr8:123580995..123581003,-#_730d85a5e8cb02ecf9b97b29e31ddf89 | p@chr8:123580995..123581003, - |
| 7.14e-26 | FFCP PHASE1:Hg19::chr10:103040652..103040655,+#_730d85a5e8cb02ecf9b97b29e31ddf89 | p1@ENST00000492301 |
| 7.14e-26 | FFCP PHASE1:Hg19::chr6:34208414..34208429,+#_730d85a5e8cb02ecf9b97b29e31ddf89 | p16@HMGA1 |
| 7.14e-26 | FFCP PHASE1:Hg19::chr17:61995172..61995199,-#_730d85a5e8cb02ecf9b97b29e31ddf89 | p@chr17:61995172..61995199, - |
| 7.14e-26 | FFCP PHASE1:Hg19::chr18:65175930..65175941,+#_730d85a5e8cb02ecf9b97b29e31ddf89 | p@chr18:65175930..65175941, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr2:73302288..73302299,-#_730d85a5e8cb02ecf9b97b29e31ddf89 | p13@RAB11FIP5 |
| 7.14e-26 | FFCP PHASE1:Hg19::chr19:15509437..15509442,-#_730d85a5e8cb02ecf9b97b29e31ddf89 | p@chr19:15509437..15509442, - |
| 9.18e-26 | FFCP PHASE2:Hg19::chr6:148593641..148593643,+#_c5f7f709704ba344e2f679ac9265a509 | p@chr6:148593641..148593643, + |
| 9.18e-26 | FFCP PHASE2:Hg19::chr9:33797981..33798005,-#_c5f7f709704ba344e2f679ac9265a509 | p@chr9:33797981..33798005, - |
| 9.18e-26 | FFCP PHASE2:Hg19::chr3:11675748..11675759,-#_c5f7f709704ba344e2f679ac9265a509 | p@chr3:11675748..11675759, - |
| 9.18e-26 | FFCP PHASE1:Hg19::chr5:146890197..146890224,-#_c5f7f709704ba344e2f679ac9265a509 | p@chr5:146890197..146890224, - |
| 9.18e-26 | FFCP PHASE1:Hg19::chr8:37374492..37374499,-#_c5f7f709704ba344e2f679ac9265a509 | p1@ENST00000521989 |
| 9.18e-26 | FFCP PHASE1:Hg19::chr4:114257151..114257163,+#_c5f7f709704ba344e2f679ac9265a509 | p28@ANK2 |
| 9.18e-26 | FFCP PHASE2:Hg19::chr4:74392579..74392583,+#_c5f7f709704ba344e2f679ac9265a509 | p@chr4:74392579..74392583, + |
| 9.18e-26 | FFCP PHASE2:Hg19::chr15:71371688..71371691,-#_c5f7f709704ba344e2f679ac9265a509 | p@chr15:71371688..71371691, - |
| 9.18e-26 | FFCP PHASE2:Hg19::chr11:13484984..13484992,+#_c5f7f709704ba344e2f679ac9265a509 | p5@BC031228 |
| 9.18e-26 | FFCP PHASE1:Hg19::chr8:94712896..94712909,+#_c5f7f709704ba344e2f679ac9265a509 | p10@FAM92A1 |
| 9.18e-26 | FFCP PHASE1:Hg19::chr2:84316409..84316414,-#_c5f7f709704ba344e2f679ac9265a509 | p@chr2:84316409..84316414, - |
| 9.18e-26 | FFCP PHASE2:Hg19::chr19:681941..681952,+#_c5f7f709704ba344e2f679ac9265a509 | p@chr19:681941..681952, + |
| 9.18e-26 | FFCP PHASE1:Hg19::chr15:71371688..71371691,-#_c5f7f709704ba344e2f679ac9265a509 | p@chr15:71371688..71371691, - |
| 9.18e-26 | FFCP PHASE2:Hg19::chr1:185703364..185703371,-#_c5f7f709704ba344e2f679ac9265a509 | p@chr1:185703364..185703371, - |
| 9.18e-26 | FFCP PHASE1:Hg19::chr6:148593641..148593643,+#_c5f7f709704ba344e2f679ac9265a509 | p@chr6:148593641..148593643, + |
| 9.18e-26 | FFCP PHASE1:Hg19::chr2:238116338..238116342,-#_c5f7f709704ba344e2f679ac9265a509 | p@chr2:238116338..238116342, - |
| 9.18e-26 | FFCP PHASE1:Hg19::chr9:33797981..33798005,-#_c5f7f709704ba344e2f679ac9265a509 | p@chr9:33797981..33798005, - |
| 9.18e-26 | FFCP PHASE1:Hg19::chr11:13484984..13484992,+#_c5f7f709704ba344e2f679ac9265a509 | p5@BC031228 |
| 9.18e-26 | FFCP PHASE2:Hg19::chr8:37374492..37374499,-#_c5f7f709704ba344e2f679ac9265a509 | p1@ENST00000521989 |
| 9.18e-26 | FFCP PHASE1:Hg19::chr4:74392579..74392583,+#_c5f7f709704ba344e2f679ac9265a509 | p@chr4:74392579..74392583, + |
| 9.18e-26 | FFCP PHASE2:Hg19::chr5:146890197..146890224,-#_c5f7f709704ba344e2f679ac9265a509 | p@chr5:146890197..146890224, - |
| 9.18e-26 | FFCP PHASE2:Hg19::chr2:84316409..84316414,-#_c5f7f709704ba344e2f679ac9265a509 | p@chr2:84316409..84316414, - |
| 9.18e-26 | FFCP PHASE1:Hg19::chr3:11675748..11675759,-#_c5f7f709704ba344e2f679ac9265a509 | p@chr3:11675748..11675759, - |
| 9.18e-26 | FFCP PHASE2:Hg19::chr4:114257151..114257163,+#_c5f7f709704ba344e2f679ac9265a509 | p28@ANK2 |
