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{{DOID
{{DOID
|id=DOID:3904
|alt_id=
|name=bronchogenic carcinoma
|namespace=disease_ontology
|def=
|xref=MSH:D002283;;NCI:C35875;;SNOMEDCT_2010_1_31:154485001;;SNOMEDCT_2010_1_31:254622008;;SNOMEDCT_2010_1_31:269561006;;SNOMEDCT_2010_1_31:363493006;;UMLS_CUI:C0007121
|is_a=DOID:1325
|synonym="BC - Bronchogenic carcinoma" EXACT [SNOMEDCT_2005_07_31:254622008];;"bronchial cancer" EXACT [CSP2005:2017-5516];;"Bronchiogenic carcinoma" EXACT [NCI2004_11_17:C35875];;"bronchogenic carcinoma" EXACT [CSP2005:2017-6052];;"Bronchus carcinoma" EXACT [SNOMEDCT_2005_07_31:154485001];;"Bronchus carcinoma" EXACT [SNOMEDCT_2005_07_31:269561006];;"cancer of bronchus" EXACT [SNOMEDCT_2005_07_31:363493006]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=DOID:3904
|is_a=DOID:1325
|is_obsolete=
|located_in=
|located_in=
|name=bronchogenic carcinoma
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|is_obsolete=
|subset=
|preceded_by=
|synonym="BC - Bronchogenic carcinoma" EXACT [SNOMEDCT_2005_07_31:254622008];;"bronchial cancer" EXACT [CSP2005:2017-5516];;"Bronchiogenic carcinoma" EXACT [NCI2004_11_17:C35875];;"bronchogenic carcinoma" EXACT [CSP2005:2017-6052];;"Bronchus carcinoma" EXACT [SNOMEDCT_2005_07_31:154485001];;"Bronchus carcinoma" EXACT [SNOMEDCT_2005_07_31:269561006];;"cancer of bronchus" EXACT [SNOMEDCT_2005_07_31:363493006]
|union_of=
|xref=MSH:D002283;;NCI:C35875;;SNOMEDCT_2010_1_31:154485001;;SNOMEDCT_2010_1_31:254622008;;SNOMEDCT_2010_1_31:269561006;;SNOMEDCT_2010_1_31:363493006;;UMLS_CUI:C0007121
}}
}}

Latest revision as of 16:51, 12 September 2014

Name:bronchogenic carcinoma
Namespace:FANTOM
Xrefs:
links:

MSH:D002283
NCI:C35875
SNOMEDCT_2010_1_31:154485001
SNOMEDCT_2010_1_31:254622008
SNOMEDCT_2010_1_31:269561006
SNOMEDCT_2010_1_31:363493006

UMLS_CUI:C0007121
Synonyms: "BC - Bronchogenic carcinoma" EXACT [SNOMEDCT_2005_07_31:254622008]
"bronchial cancer" EXACT [CSP2005:2017-5516]
"Bronchiogenic carcinoma" EXACT [NCI2004_11_17:C35875]
"bronchogenic carcinoma" EXACT [CSP2005:2017-6052]
"Bronchus carcinoma" EXACT [SNOMEDCT_2005_07_31:154485001]
"Bronchus carcinoma" EXACT [SNOMEDCT_2005_07_31:269561006]
"cancer of bronchus" EXACT [SNOMEDCT_2005_07_31:363493006]

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:DOID:1325(bronchus cancer)



Children
NA

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:3904 (bronchogenic carcinoma), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
4.76e-57FFCP PHASE2:Hg19::chr6:45405332..45405343,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:45405332..45405343, +
4.76e-57FFCP PHASE2:Hg19::chr6:45399245..45399258,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:45399245..45399258, +
4.76e-57FFCP PHASE2:Hg19::chr6:45399533..45399540,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:45399533..45399540, +
4.76e-57FFCP PHASE1:Hg19::chr6:45399294..45399301,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:45399294..45399301, +
4.76e-57FFCP PHASE2:Hg19::chr6:45405393..45405412,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:45405393..45405412, +
4.76e-57FFCP PHASE2:Hg19::chr6:45399263..45399274,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:45399263..45399274, +
4.76e-57FFCP PHASE2:Hg19::chr6:125378873..125378876,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:125378873..125378876, +
4.76e-57FFCP PHASE1:Hg19::chr6:45405332..45405343,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:45405332..45405343, +
4.76e-57FFCP PHASE1:Hg19::chr6:45399245..45399258,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:45399245..45399258, +
4.76e-57FFCP PHASE1:Hg19::chr6:45399533..45399540,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:45399533..45399540, +
4.76e-57FFCP PHASE1:Hg19::chr6:45405393..45405412,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:45405393..45405412, +
4.76e-57FFCP PHASE2:Hg19::chr6:45399294..45399301,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:45399294..45399301, +
4.76e-57FFCP PHASE1:Hg19::chr6:45399263..45399274,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:45399263..45399274, +
4.76e-57FFCP PHASE1:Hg19::chr6:125378873..125378876,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:125378873..125378876, +
1.49e-38FFCP PHASE1:Hg19::chr8:40525350..40525354,-#_3efaffa271a7215afa8f9beebeea155ap@chr8:40525350..40525354, -
1.49e-38FFCP PHASE2:Hg19::chr6:73786620..73786627,+#_3efaffa271a7215afa8f9beebeea155ap@chr6:73786620..73786627, +
1.49e-38FFCP PHASE1:Hg19::chr6:45399724..45399733,+#_3efaffa271a7215afa8f9beebeea155ap@chr6:45399724..45399733, +
1.49e-38FFCP PHASE1:Hg19::chr6:73786593..73786601,+#_3efaffa271a7215afa8f9beebeea155ap@chr6:73786593..73786601, +
1.49e-38FFCP PHASE1:Hg19::chr6:45399422..45399430,+#_3efaffa271a7215afa8f9beebeea155ap@chr6:45399422..45399430, +
1.49e-38FFCP PHASE1:Hg19::chr6:73786620..73786627,+#_3efaffa271a7215afa8f9beebeea155ap@chr6:73786620..73786627, +
1.49e-38FFCP PHASE2:Hg19::chr8:40525350..40525354,-#_3efaffa271a7215afa8f9beebeea155ap@chr8:40525350..40525354, -
1.49e-38FFCP PHASE2:Hg19::chr6:45399724..45399733,+#_3efaffa271a7215afa8f9beebeea155ap@chr6:45399724..45399733, +
1.49e-38FFCP PHASE2:Hg19::chr6:73786593..73786601,+#_3efaffa271a7215afa8f9beebeea155ap@chr6:73786593..73786601, +
1.49e-38FFCP PHASE2:Hg19::chr6:45399422..45399430,+#_3efaffa271a7215afa8f9beebeea155ap@chr6:45399422..45399430, +
1.8e-38FFCP PHASE2:Hg19::chr18:10085554..10085562,+#_a89e065dbffaa49eaeb69500b6779beep@chr18:10085554..10085562, +
1.8e-38FFCP PHASE1:Hg19::chr18:10085554..10085562,+#_a89e065dbffaa49eaeb69500b6779beep@chr18:10085554..10085562, +
2.18e-38FFCP PHASE1:Hg19::chr2:233352641..233352675,+#_2f810072074677b83937c1f2a5e1735bp@chr2:233352641..233352675, +
2.18e-38FFCP PHASE2:Hg19::chr2:233352641..233352675,+#_2f810072074677b83937c1f2a5e1735bp@chr2:233352641..233352675, +
1.14e-32FFCP PHASE1:Hg19::chr14:106916169..106916203,+#_0f3f47edfc78ae20205a26a9a4185251p@chr14:106916169..106916203, +
1.14e-32FFCP PHASE2:Hg19::chr14:106916169..106916203,+#_0f3f47edfc78ae20205a26a9a4185251p@chr14:106916169..106916203, +
1.78e-29FFCP PHASE2:Hg19::chr2:234862417..234862434,+#_39df5efeecaef77fad20cc2f4b578036p6@TRPM8
1.78e-29FFCP PHASE2:Hg19::chr14:60958049..60958051,-#_39df5efeecaef77fad20cc2f4b578036p@chr14:60958049..60958051, -
1.78e-29FFCP PHASE2:Hg19::chr11:86502231..86502240,-#_39df5efeecaef77fad20cc2f4b578036p@chr11:86502231..86502240, -
1.78e-29FFCP PHASE1:Hg19::chr2:220594700..220594702,+#_39df5efeecaef77fad20cc2f4b578036p6@ENST00000442416
1.78e-29FFCP PHASE1:Hg19::chr2:103235211..103235247,+#_39df5efeecaef77fad20cc2f4b578036p@chr2:103235211..103235247, +
1.78e-29FFCP PHASE1:Hg19::chr14:58415850..58415853,-#_39df5efeecaef77fad20cc2f4b578036p@chr14:58415850..58415853, -
1.78e-29FFCP PHASE2:Hg19::chr6:998897..998898,-#_39df5efeecaef77fad20cc2f4b578036p@chr6:998897..998898, -
1.78e-29FFCP PHASE2:Hg19::chr4:3838289..3838308,-#_39df5efeecaef77fad20cc2f4b578036p@chr4:3838289..3838308, -
1.78e-29FFCP PHASE2:Hg19::chr12:79756320..79756329,-#_39df5efeecaef77fad20cc2f4b578036p@chr12:79756320..79756329, -
1.78e-29FFCP PHASE1:Hg19::chr9:226208..226216,-#_39df5efeecaef77fad20cc2f4b578036p@chr9:226208..226216, -
1.78e-29FFCP PHASE1:Hg19::chr7:26482715..26482738,-#_39df5efeecaef77fad20cc2f4b578036p@chr7:26482715..26482738, -
1.78e-29FFCP PHASE1:Hg19::chr6:45399278..45399287,+#_39df5efeecaef77fad20cc2f4b578036p@chr6:45399278..45399287, +
1.78e-29FFCP PHASE2:Hg19::chr3:150914094..150914095,+#_39df5efeecaef77fad20cc2f4b578036p@chr3:150914094..150914095, +
1.78e-29FFCP PHASE2:Hg19::chr11:42142040..42142055,+#_39df5efeecaef77fad20cc2f4b578036p@chr11:42142040..42142055, +
1.78e-29FFCP PHASE1:Hg19::chr8:97962018..97962029,-#_39df5efeecaef77fad20cc2f4b578036p@chr8:97962018..97962029, -
1.78e-29FFCP PHASE1:Hg19::chr3:102635409..102635414,-#_39df5efeecaef77fad20cc2f4b578036p@chr3:102635409..102635414, -
1.78e-29FFCP PHASE1:Hg19::chr2:23850233..23850248,+#_39df5efeecaef77fad20cc2f4b578036p@chr2:23850233..23850248, +
1.78e-29FFCP PHASE2:Hg19::chrX:48056224..48056233,-#_39df5efeecaef77fad20cc2f4b578036p1@SSX5
1.78e-29FFCP PHASE2:Hg19::chr7:95766200..95766209,-#_39df5efeecaef77fad20cc2f4b578036p@chr7:95766200..95766209, -
1.78e-29FFCP PHASE2:Hg19::chr14:57127856..57127863,+#_39df5efeecaef77fad20cc2f4b578036p@chr14:57127856..57127863, +
1.78e-29FFCP PHASE1:Hg19::chr7:79840127..79840130,+#_39df5efeecaef77fad20cc2f4b578036p@chr7:79840127..79840130, +
1.78e-29FFCP PHASE2:Hg19::chr4:157516018..157516023,+#_39df5efeecaef77fad20cc2f4b578036p@chr4:157516018..157516023, +
1.78e-29FFCP PHASE1:Hg19::chr8:38459926..38459928,+#_39df5efeecaef77fad20cc2f4b578036p@chr8:38459926..38459928, +
1.78e-29FFCP PHASE1:Hg19::chr11:41519057..41519065,-#_39df5efeecaef77fad20cc2f4b578036p@chr11:41519057..41519065, -
1.78e-29FFCP PHASE1:Hg19::chr15:89655929..89655934,+#_39df5efeecaef77fad20cc2f4b578036p@chr15:89655929..89655934, +
1.78e-29FFCP PHASE1:Hg19::chr10:129704382..129704389,+#_39df5efeecaef77fad20cc2f4b578036p@chr10:129704382..129704389, +
1.78e-29FFCP PHASE1:Hg19::chr17:79970753..79970763,+#_39df5efeecaef77fad20cc2f4b578036p15@ASPSCR1
1.78e-29FFCP PHASE2:Hg19::chr6:64762702..64762707,+#_39df5efeecaef77fad20cc2f4b578036p@chr6:64762702..64762707, +
1.78e-29FFCP PHASE2:Hg19::chr3:86701902..86701920,-#_39df5efeecaef77fad20cc2f4b578036p@chr3:86701902..86701920, -
1.78e-29FFCP PHASE2:Hg19::chr21:26151976..26151979,+#_39df5efeecaef77fad20cc2f4b578036p@chr21:26151976..26151979, +
1.78e-29FFCP PHASE2:Hg19::chr18:39258990..39258996,-#_39df5efeecaef77fad20cc2f4b578036p@chr18:39258990..39258996, -
1.78e-29FFCP PHASE2:Hg19::chr17:58979826..58979836,+#_39df5efeecaef77fad20cc2f4b578036p@chr17:58979826..58979836, +
1.78e-29FFCP PHASE2:Hg19::chr13:95133382..95133389,-#_39df5efeecaef77fad20cc2f4b578036p@chr13:95133382..95133389, -
1.78e-29FFCP PHASE2:Hg19::chr8:98103977..98103981,-#_39df5efeecaef77fad20cc2f4b578036p@chr8:98103977..98103981, -
1.78e-29FFCP PHASE1:Hg19::chr16:11118533..11118538,+#_39df5efeecaef77fad20cc2f4b578036p12@CLEC16A
1.78e-29FFCP PHASE2:Hg19::chr5:33619040..33619056,-#_39df5efeecaef77fad20cc2f4b578036p@chr5:33619040..33619056, -
1.78e-29FFCP PHASE2:Hg19::chr2:241625621..241625629,+#_39df5efeecaef77fad20cc2f4b578036p2@ENST00000407635
1.78e-29FFCP PHASE2:Hg19::chr11:20538015..20538023,-#_39df5efeecaef77fad20cc2f4b578036p@chr11:20538015..20538023, -
1.78e-29FFCP PHASE1:Hg19::chr8:85893922..85893940,+#_39df5efeecaef77fad20cc2f4b578036p@chr8:85893922..85893940, +
1.78e-29FFCP PHASE1:Hg19::chr2:97626588..97626595,-#_39df5efeecaef77fad20cc2f4b578036p@chr2:97626588..97626595, -
1.78e-29FFCP PHASE1:Hg19::chr10:65821760..65821780,+#_39df5efeecaef77fad20cc2f4b578036p@chr10:65821760..65821780, +
1.78e-29FFCP PHASE2:Hg19::chr10:129704473..129704478,+#_39df5efeecaef77fad20cc2f4b578036p@chr10:129704473..129704478, +
1.78e-29FFCP PHASE1:Hg19::chr9:9763035..9763040,-#_39df5efeecaef77fad20cc2f4b578036p@chr9:9763035..9763040, -
1.78e-29FFCP PHASE1:Hg19::chr6:998859..998863,-#_39df5efeecaef77fad20cc2f4b578036p@chr6:998859..998863, -
1.78e-29FFCP PHASE1:Hg19::chr4:3344577..3344588,+#_39df5efeecaef77fad20cc2f4b578036p@chr4:3344577..3344588, +
1.78e-29FFCP PHASE1:Hg19::chr16:7428243..7428259,+#_39df5efeecaef77fad20cc2f4b578036p@chr16:7428243..7428259, +
1.78e-29FFCP PHASE2:Hg19::chr5:134920622..134920655,+#_39df5efeecaef77fad20cc2f4b578036p@chr5:134920622..134920655, +
1.78e-29FFCP PHASE2:Hg19::chr14:60194070..60194083,-#_39df5efeecaef77fad20cc2f4b578036p25@RTN1
1.78e-29FFCP PHASE2:Hg19::chr13:76563913..76563916,+#_39df5efeecaef77fad20cc2f4b578036p@chr13:76563913..76563916, +
1.78e-29FFCP PHASE2:Hg19::chr10:66459172..66459188,-#_39df5efeecaef77fad20cc2f4b578036p@chr10:66459172..66459188, -
1.78e-29FFCP PHASE1:Hg19::chr6:31681859..31681865,-#_39df5efeecaef77fad20cc2f4b578036p3@LY6G6E
1.78e-29FFCP PHASE2:Hg19::chr8:98015654..98015697,-#_39df5efeecaef77fad20cc2f4b578036p@chr8:98015654..98015697, -
1.78e-29FFCP PHASE2:Hg19::chr6:154729003..154729006,-#_39df5efeecaef77fad20cc2f4b578036p@chr6:154729003..154729006, -
1.78e-29FFCP PHASE1:Hg19::chr6:129513919..129513922,+#_39df5efeecaef77fad20cc2f4b578036p@chr6:129513919..129513922, +
1.78e-29FFCP PHASE1:Hg19::chr2:97626065..97626084,-#_39df5efeecaef77fad20cc2f4b578036p@chr2:97626065..97626084, -
1.78e-29FFCP PHASE2:Hg19::chrX:135764624..135764645,-#_39df5efeecaef77fad20cc2f4b578036p@chrX:135764624..135764645, -
1.78e-29FFCP PHASE1:Hg19::chr14:60194331..60194336,-#_39df5efeecaef77fad20cc2f4b578036p36@RTN1
1.78e-29FFCP PHASE2:Hg19::chr7:120381610..120381618,+#_39df5efeecaef77fad20cc2f4b578036p@chr7:120381610..120381618, +
1.78e-29FFCP PHASE1:Hg19::chr3:86289712..86289720,+#_39df5efeecaef77fad20cc2f4b578036p@chr3:86289712..86289720, +
1.78e-29FFCP PHASE2:Hg19::chr9:129291797..129291800,-#_39df5efeecaef77fad20cc2f4b578036p@chr9:129291797..129291800, -
1.78e-29FFCP PHASE2:Hg19::chr6:23637711..23637717,-#_39df5efeecaef77fad20cc2f4b578036p@chr6:23637711..23637717, -
1.78e-29FFCP PHASE2:Hg19::chr20:2779199..2779205,-#_39df5efeecaef77fad20cc2f4b578036p13@CPXM1
1.78e-29FFCP PHASE1:Hg19::chr8:98075951..98075959,-#_39df5efeecaef77fad20cc2f4b578036p@chr8:98075951..98075959, -
1.78e-29FFCP PHASE1:Hg19::chr5:28572013..28572023,-#_39df5efeecaef77fad20cc2f4b578036p@chr5:28572013..28572023, -
1.78e-29FFCP PHASE1:Hg19::chr2:241625540..241625541,+#_39df5efeecaef77fad20cc2f4b578036p14@ENST00000407635
1.78e-29FFCP PHASE2:Hg19::chr5:134907210..134907215,-#_39df5efeecaef77fad20cc2f4b578036p@chr5:134907210..134907215, -
1.78e-29FFCP PHASE2:Hg19::chr2:130568628..130568649,+#_39df5efeecaef77fad20cc2f4b578036p@chr2:130568628..130568649, +
1.78e-29FFCP PHASE2:Hg19::chr14:58439259..58439262,-#_39df5efeecaef77fad20cc2f4b578036p@chr14:58439259..58439262, -
1.78e-29FFCP PHASE2:Hg19::chr3:78334430..78334433,-#_39df5efeecaef77fad20cc2f4b578036p@chr3:78334430..78334433, -
1.78e-29FFCP PHASE2:Hg19::chr2:135169581..135169587,+#_39df5efeecaef77fad20cc2f4b578036p@chr2:135169581..135169587, +

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