DOID:1324: Difference between revisions
From FANTOM5_SSTAR
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|id=DOID:1324
|name=lung cancer
|namespace=
|def="A respiratory system cancer that is located_in the lung." [url:http\://en.wikipedia.org/wiki/Lung_cancer]
|xref=
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{{DOID | {{DOID | ||
| | |alt_id=DOID:13075;;DOID:1322;;DOID:9881 | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def="A respiratory system cancer that is located_in the lung." [url:http://en.wikipedia.org/wiki/Lung_cancer] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=DOID:1324 | |||
|is_a=DOID:0050615 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=lung cancer | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of= | |part_of= | ||
|preceded_by= | |||
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo | |||
|subset= | |||
|synonym= | |||
|union_of= | |||
|xref=ICD9CM:162.3;;SNOMEDCT_2010_1_31:187860004;;SNOMEDCT_2010_1_31:187863002;;SNOMEDCT_2010_1_31:187864008;;SNOMEDCT_2010_1_31:187867001;;SNOMEDCT_2010_1_31:187868006;;SNOMEDCT_2010_1_31:187871003;;SNOMEDCT_2010_1_31:187874006;;SNOMEDCT_2010_1_31:269464000;;UMLS_CUI:C0024624;;UMLS_CUI:C0153491;;UMLS_CUI:C0153492;;UMLS_CUI:C0153493 | |||
}} | }} | ||
Latest revision as of 16:48, 12 September 2014
| Name: | lung cancer | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A respiratory system cancer that is located_in the lung." [url:http://en.wikipedia.org/wiki/Lung_cancer] | ||
| Xrefs: |
| ||
| Alt_id: |
DOID:13075 DOID:1322 DOID:9881 |
Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | DOID:0050615(respiratory system cancer) |
|---|
Children
| is a: | DOID:1325 (bronchus cancer),DOID:3905 (lung carcinoma) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples
Human (Homo sapiens)
- 10408-106B3 (lung adenocarcinoma cell line:PC-14)
- 10457-106G7 (squamous cell lung carcinoma cell line:LC-1F)
- 10462-106H3
- 10468-106H9
- 10472-106I4
- 10486-107A9 (squamous cell lung carcinoma cell line:EBC-1)
- 10499-107C4 (lung adenocarcinoma cell line:A549)
- 10500-107C5
- 10501-107C6 (squamous cell lung carcinoma cell line:RERF-LC-AI)
- 10502-107C7
... further results Mouse (Mus musculus)
- 10408-106B3 (lung adenocarcinoma cell line:PC-14)
- 10457-106G7 (squamous cell lung carcinoma cell line:LC-1F)
- 10462-106H3
- 10468-106H9
- 10472-106I4
- 10486-107A9 (squamous cell lung carcinoma cell line:EBC-1)
- 10499-107C4 (lung adenocarcinoma cell line:A549)
- 10500-107C5
- 10501-107C6 (squamous cell lung carcinoma cell line:RERF-LC-AI)
- 10502-107C7
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:1324 (lung cancer), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.45e-30 | FFCP PHASE2:Hg19::chr2:233352573..233352580,-#_881f7627f0bb39dce6f8d82130fabab8 | p4@ECEL1 |
| 2.45e-30 | FFCP PHASE1:Hg19::chr2:233352573..233352580,-#_881f7627f0bb39dce6f8d82130fabab8 | p4@ECEL1 |
| 1.82e-27 | FFCP PHASE1:Hg19::chr6:45399294..45399301,+#_0c90b2c9641b7d2a52e9e0430a71bdcd | p@chr6:45399294..45399301, + |
| 1.82e-27 | FFCP PHASE2:Hg19::chr6:45405393..45405412,+#_0c90b2c9641b7d2a52e9e0430a71bdcd | p@chr6:45405393..45405412, + |
| 1.82e-27 | FFCP PHASE1:Hg19::chr6:45405332..45405343,+#_0c90b2c9641b7d2a52e9e0430a71bdcd | p@chr6:45405332..45405343, + |
| 1.82e-27 | FFCP PHASE1:Hg19::chr6:125378873..125378876,+#_0c90b2c9641b7d2a52e9e0430a71bdcd | p@chr6:125378873..125378876, + |
| 1.82e-27 | FFCP PHASE2:Hg19::chr7:157944243..157944249,-#_0c90b2c9641b7d2a52e9e0430a71bdcd | p@chr7:157944243..157944249, - |
| 1.82e-27 | FFCP PHASE2:Hg19::chr6:45399245..45399258,+#_0c90b2c9641b7d2a52e9e0430a71bdcd | p@chr6:45399245..45399258, + |
| 1.82e-27 | FFCP PHASE2:Hg19::chr6:45399533..45399540,+#_0c90b2c9641b7d2a52e9e0430a71bdcd | p@chr6:45399533..45399540, + |
| 1.82e-27 | FFCP PHASE1:Hg19::chr6:45405393..45405412,+#_0c90b2c9641b7d2a52e9e0430a71bdcd | p@chr6:45405393..45405412, + |
| 1.82e-27 | FFCP PHASE1:Hg19::chr7:157944243..157944249,-#_0c90b2c9641b7d2a52e9e0430a71bdcd | p@chr7:157944243..157944249, - |
| 1.82e-27 | FFCP PHASE1:Hg19::chr6:45399245..45399258,+#_0c90b2c9641b7d2a52e9e0430a71bdcd | p@chr6:45399245..45399258, + |
| 1.82e-27 | FFCP PHASE2:Hg19::chr6:45399263..45399274,+#_0c90b2c9641b7d2a52e9e0430a71bdcd | p@chr6:45399263..45399274, + |
| 1.82e-27 | FFCP PHASE1:Hg19::chr6:45399533..45399540,+#_0c90b2c9641b7d2a52e9e0430a71bdcd | p@chr6:45399533..45399540, + |
| 1.82e-27 | FFCP PHASE1:Hg19::chr6:45399263..45399274,+#_0c90b2c9641b7d2a52e9e0430a71bdcd | p@chr6:45399263..45399274, + |
| 1.82e-27 | FFCP PHASE2:Hg19::chr7:31938679..31938703,-#_0c90b2c9641b7d2a52e9e0430a71bdcd | p@chr7:31938679..31938703, - |
| 1.82e-27 | FFCP PHASE2:Hg19::chr6:45399294..45399301,+#_0c90b2c9641b7d2a52e9e0430a71bdcd | p@chr6:45399294..45399301, + |
| 1.82e-27 | FFCP PHASE1:Hg19::chr7:31938679..31938703,-#_0c90b2c9641b7d2a52e9e0430a71bdcd | p@chr7:31938679..31938703, - |
| 1.82e-27 | FFCP PHASE2:Hg19::chr6:45405332..45405343,+#_0c90b2c9641b7d2a52e9e0430a71bdcd | p@chr6:45405332..45405343, + |
| 1.82e-27 | FFCP PHASE2:Hg19::chr6:125378873..125378876,+#_0c90b2c9641b7d2a52e9e0430a71bdcd | p@chr6:125378873..125378876, + |
| 1.78e-24 | FFCP PHASE2:Hg19::chr6:73785930..73785949,-#_719f6aeb676b3b895635698590d7b613 | p@chr6:73785930..73785949, - |
| 1.78e-24 | FFCP PHASE1:Hg19::chr6:73785930..73785949,-#_719f6aeb676b3b895635698590d7b613 | p@chr6:73785930..73785949, - |
| 1.93e-24 | FFCP PHASE2:Hg19::chr10:5057199..5057247,-#_7712ad52b76a5d6be571d6723537e1a4 | p@chr10:5057199..5057247, - |
| 1.93e-24 | FFCP PHASE1:Hg19::chr10:5057199..5057247,-#_7712ad52b76a5d6be571d6723537e1a4 | p@chr10:5057199..5057247, - |
| 7.51e-24 | FFCP PHASE2:Hg19::chr1:161085273..161085285,+#_fdf641d5d37359ef5154caa6781bb30a | p@chr1:161085273..161085285, + |
| 7.51e-24 | FFCP PHASE1:Hg19::chr1:161085273..161085285,+#_fdf641d5d37359ef5154caa6781bb30a | p@chr1:161085273..161085285, + |
| 1.95e-21 | FFCP PHASE2:Hg19::chr14:36990061..36990072,-#_9587368bf2d05a0ca9bb9ee025adad7e | p11@NKX2-1 |
| 1.95e-21 | FFCP PHASE1:Hg19::chr14:36990061..36990072,-#_9587368bf2d05a0ca9bb9ee025adad7e | p11@NKX2-1 |
| 5.53e-21 | FFCP PHASE2:Hg19::chr8:63077406..63077421,-#_ea4b553313db99b162fa0c781a66d717 | p@chr8:63077406..63077421, - |
| 5.53e-21 | FFCP PHASE1:Hg19::chr8:63077406..63077421,-#_ea4b553313db99b162fa0c781a66d717 | p@chr8:63077406..63077421, - |
| 1.2e-20 | FFCP PHASE2:Hg19::chr14:36989407..36989410,-#_9d2fa23bef08c177eff16632da0a8ee8 | p15@NKX2-1 |
| 1.2e-20 | FFCP PHASE1:Hg19::chr14:36989407..36989410,-#_9d2fa23bef08c177eff16632da0a8ee8 | p15@NKX2-1 |
| 1.91e-20 | FFCP PHASE2:Hg19::chr2:194367545..194367554,+#_f8e2296a21069037ea1e06b56c19d61c | p@chr2:194367545..194367554, + |
| 1.91e-20 | FFCP PHASE1:Hg19::chr2:194367545..194367554,+#_f8e2296a21069037ea1e06b56c19d61c | p@chr2:194367545..194367554, + |
| 1.04e-19 | FFCP PHASE2:Hg19::chr14:36989412..36989423,-#_ffff225bea2fde8e80993c84fee5d15a | p12@NKX2-1 |
| 1.04e-19 | FFCP PHASE1:Hg19::chr14:36989412..36989423,-#_ffff225bea2fde8e80993c84fee5d15a | p12@NKX2-1 |
| 1.04e-18 | FFCP PHASE1:Hg19::chr6:73786593..73786601,+#_a5174381efccb52017eb3ea810aa6661 | p@chr6:73786593..73786601, + |
| 1.04e-18 | FFCP PHASE2:Hg19::chr6:73786620..73786627,+#_a5174381efccb52017eb3ea810aa6661 | p@chr6:73786620..73786627, + |
| 1.04e-18 | FFCP PHASE2:Hg19::chr6:45399422..45399430,+#_a5174381efccb52017eb3ea810aa6661 | p@chr6:45399422..45399430, + |
| 1.04e-18 | FFCP PHASE1:Hg19::chr11:69518108..69518118,-#_a5174381efccb52017eb3ea810aa6661 | p@chr11:69518108..69518118, - |
| 1.04e-18 | FFCP PHASE1:Hg19::chr13:70823810..70823813,+#_a5174381efccb52017eb3ea810aa6661 | p@chr13:70823810..70823813, + |
| 1.04e-18 | FFCP PHASE1:Hg19::chr5:92526866..92526914,-#_a5174381efccb52017eb3ea810aa6661 | p@chr5:92526866..92526914, - |
| 1.04e-18 | FFCP PHASE1:Hg19::chr6:73786620..73786627,+#_a5174381efccb52017eb3ea810aa6661 | p@chr6:73786620..73786627, + |
| 1.04e-18 | FFCP PHASE1:Hg19::chr11:69518332..69518343,-#_a5174381efccb52017eb3ea810aa6661 | p@chr11:69518332..69518343, - |
| 1.04e-18 | FFCP PHASE1:Hg19::chr6:45399422..45399430,+#_a5174381efccb52017eb3ea810aa6661 | p@chr6:45399422..45399430, + |
| 1.04e-18 | FFCP PHASE2:Hg19::chr11:69518108..69518118,-#_a5174381efccb52017eb3ea810aa6661 | p@chr11:69518108..69518118, - |
| 1.04e-18 | FFCP PHASE2:Hg19::chr12:57638896..57638928,-#_a5174381efccb52017eb3ea810aa6661 | p@chr12:57638896..57638928, - |
| 1.04e-18 | FFCP PHASE2:Hg19::chr8:40525350..40525354,-#_a5174381efccb52017eb3ea810aa6661 | p@chr8:40525350..40525354, - |
| 1.04e-18 | FFCP PHASE2:Hg19::chr7:1968190..1968198,-#_a5174381efccb52017eb3ea810aa6661 | p@chr7:1968190..1968198, - |
| 1.04e-18 | FFCP PHASE2:Hg19::chr4:3344434..3344441,+#_a5174381efccb52017eb3ea810aa6661 | p@chr4:3344434..3344441, + |
| 1.04e-18 | FFCP PHASE2:Hg19::chr11:69518332..69518343,-#_a5174381efccb52017eb3ea810aa6661 | p@chr11:69518332..69518343, - |
| 1.04e-18 | FFCP PHASE2:Hg19::chr6:45399724..45399733,+#_a5174381efccb52017eb3ea810aa6661 | p@chr6:45399724..45399733, + |
| 1.04e-18 | FFCP PHASE1:Hg19::chr8:40525350..40525354,-#_a5174381efccb52017eb3ea810aa6661 | p@chr8:40525350..40525354, - |
| 1.04e-18 | FFCP PHASE1:Hg19::chr7:1968190..1968198,-#_a5174381efccb52017eb3ea810aa6661 | p@chr7:1968190..1968198, - |
| 1.04e-18 | FFCP PHASE2:Hg19::chr7:1968200..1968208,-#_a5174381efccb52017eb3ea810aa6661 | p@chr7:1968200..1968208, - |
| 1.04e-18 | FFCP PHASE2:Hg19::chr13:70823810..70823813,+#_a5174381efccb52017eb3ea810aa6661 | p@chr13:70823810..70823813, + |
| 1.04e-18 | FFCP PHASE2:Hg19::chr6:73786593..73786601,+#_a5174381efccb52017eb3ea810aa6661 | p@chr6:73786593..73786601, + |
| 1.04e-18 | FFCP PHASE1:Hg19::chr4:3344434..3344441,+#_a5174381efccb52017eb3ea810aa6661 | p@chr4:3344434..3344441, + |
| 1.04e-18 | FFCP PHASE1:Hg19::chr12:57638896..57638928,-#_a5174381efccb52017eb3ea810aa6661 | p@chr12:57638896..57638928, - |
| 1.04e-18 | FFCP PHASE1:Hg19::chr7:1968200..1968208,-#_a5174381efccb52017eb3ea810aa6661 | p@chr7:1968200..1968208, - |
| 1.04e-18 | FFCP PHASE1:Hg19::chr6:45399724..45399733,+#_a5174381efccb52017eb3ea810aa6661 | p@chr6:45399724..45399733, + |
| 1.04e-18 | FFCP PHASE2:Hg19::chr5:92526866..92526914,-#_a5174381efccb52017eb3ea810aa6661 | p@chr5:92526866..92526914, - |
| 1.13e-18 | FFCP PHASE2:Hg19::chr5:77683792..77683799,+#_7bc36c7d86f0cf1e6a5c74ea74493605 | p@chr5:77683792..77683799, + |
| 1.13e-18 | FFCP PHASE1:Hg19::chr4:3310694..3310716,-#_7bc36c7d86f0cf1e6a5c74ea74493605 | p@chr4:3310694..3310716, - |
| 1.13e-18 | FFCP PHASE1:Hg19::chr19:6828544..6828554,+#_7bc36c7d86f0cf1e6a5c74ea74493605 | p@chr19:6828544..6828554, + |
| 1.13e-18 | FFCP PHASE1:Hg19::chr16:19396252..19396261,+#_7bc36c7d86f0cf1e6a5c74ea74493605 | p@chr16:19396252..19396261, + |
| 1.13e-18 | FFCP PHASE1:Hg19::chr12:53686428..53686432,+#_7bc36c7d86f0cf1e6a5c74ea74493605 | p@chr12:53686428..53686432, + |
| 1.13e-18 | FFCP PHASE1:Hg19::chr5:77683792..77683799,+#_7bc36c7d86f0cf1e6a5c74ea74493605 | p@chr5:77683792..77683799, + |
| 1.13e-18 | FFCP PHASE1:Hg19::chr18:10085554..10085562,+#_7bc36c7d86f0cf1e6a5c74ea74493605 | p@chr18:10085554..10085562, + |
| 1.13e-18 | FFCP PHASE2:Hg19::chr7:44574294..44574303,-#_7bc36c7d86f0cf1e6a5c74ea74493605 | p@chr7:44574294..44574303, - |
| 1.13e-18 | FFCP PHASE2:Hg19::chr18:10085554..10085562,+#_7bc36c7d86f0cf1e6a5c74ea74493605 | p@chr18:10085554..10085562, + |
| 1.13e-18 | FFCP PHASE1:Hg19::chr7:44574294..44574303,-#_7bc36c7d86f0cf1e6a5c74ea74493605 | p@chr7:44574294..44574303, - |
| 1.13e-18 | FFCP PHASE2:Hg19::chr16:19396252..19396261,+#_7bc36c7d86f0cf1e6a5c74ea74493605 | p@chr16:19396252..19396261, + |
| 1.13e-18 | FFCP PHASE2:Hg19::chr4:3310694..3310716,-#_7bc36c7d86f0cf1e6a5c74ea74493605 | p@chr4:3310694..3310716, - |
| 1.13e-18 | FFCP PHASE2:Hg19::chr12:53686428..53686432,+#_7bc36c7d86f0cf1e6a5c74ea74493605 | p@chr12:53686428..53686432, + |
| 1.13e-18 | FFCP PHASE2:Hg19::chr19:6828544..6828554,+#_7bc36c7d86f0cf1e6a5c74ea74493605 | p@chr19:6828544..6828554, + |
| 1.24e-18 | FFCP PHASE1:Hg19::chr18:71843159..71843180,+#_c5a8225237e23ce8f9924984e267540f | p@chr18:71843159..71843180, + |
| 1.24e-18 | FFCP PHASE2:Hg19::chr18:71843121..71843138,+#_c5a8225237e23ce8f9924984e267540f | p@chr18:71843121..71843138, + |
| 1.24e-18 | FFCP PHASE2:Hg19::chr6:18208425..18208436,+#_c5a8225237e23ce8f9924984e267540f | p@chr6:18208425..18208436, + |
| 1.24e-18 | FFCP PHASE2:Hg19::chr1:156779602..156779619,-#_c5a8225237e23ce8f9924984e267540f | p@chr1:156779602..156779619, - |
| 1.24e-18 | FFCP PHASE2:Hg19::chr2:233352641..233352675,+#_c5a8225237e23ce8f9924984e267540f | p@chr2:233352641..233352675, + |
| 1.24e-18 | FFCP PHASE1:Hg19::chr18:72611750..72611755,+#_c5a8225237e23ce8f9924984e267540f | p@chr18:72611750..72611755, + |
| 1.24e-18 | FFCP PHASE2:Hg19::chr18:71843159..71843180,+#_c5a8225237e23ce8f9924984e267540f | p@chr18:71843159..71843180, + |
| 1.24e-18 | FFCP PHASE1:Hg19::chr6:18208425..18208436,+#_c5a8225237e23ce8f9924984e267540f | p@chr6:18208425..18208436, + |
| 1.24e-18 | FFCP PHASE1:Hg19::chr1:156779602..156779619,-#_c5a8225237e23ce8f9924984e267540f | p@chr1:156779602..156779619, - |
| 1.24e-18 | FFCP PHASE1:Hg19::chr2:233352641..233352675,+#_c5a8225237e23ce8f9924984e267540f | p@chr2:233352641..233352675, + |
| 1.24e-18 | FFCP PHASE2:Hg19::chr18:72611750..72611755,+#_c5a8225237e23ce8f9924984e267540f | p@chr18:72611750..72611755, + |
| 1.24e-18 | FFCP PHASE1:Hg19::chr18:71843121..71843138,+#_c5a8225237e23ce8f9924984e267540f | p@chr18:71843121..71843138, + |
| 4.45e-18 | FFCP PHASE1:Hg19::chr11:123325116..123325128,+#_c425b8074bd8ebdb61b87affa5091cf5 | p4@ENST00000525757, p4@uc001pyv.1 |
| 4.45e-18 | FFCP PHASE2:Hg19::chr11:123325116..123325128,+#_c425b8074bd8ebdb61b87affa5091cf5 | p4@ENST00000525757, p4@uc001pyv.1 |
| 5.55e-18 | FFCP PHASE2:Hg19::chrY:59027988..59028000,+#_fca7849cb7b2fa0f64c495807f3bee37 | p@chrY:59027988..59028000, + |
| 5.55e-18 | FFCP PHASE1:Hg19::chrY:59027988..59028000,+#_fca7849cb7b2fa0f64c495807f3bee37 | p@chrY:59027988..59028000, + |
| 8.77e-18 | FFCP PHASE1:Hg19::chr14:36982935..36982943,-#_ded7a0d1e86df119554861531a80e2d3 | p9@SFTA3 |
| 8.77e-18 | FFCP PHASE1:Hg19::chr11:17555398..17555410,-#_ded7a0d1e86df119554861531a80e2d3 | p9@USH1C |
| 8.77e-18 | FFCP PHASE2:Hg19::chr11:17555398..17555410,-#_ded7a0d1e86df119554861531a80e2d3 | p9@USH1C |
| 8.77e-18 | FFCP PHASE2:Hg19::chr14:36982935..36982943,-#_ded7a0d1e86df119554861531a80e2d3 | p9@SFTA3 |
| 1.04e-17 | FFCP PHASE2:Hg19::chr5:92899690..92899725,-#_011f8fdf1a2512c5a49224865dd0cffc | p@chr5:92899690..92899725, - |
| 1.04e-17 | FFCP PHASE1:Hg19::chr5:92899690..92899725,-#_011f8fdf1a2512c5a49224865dd0cffc | p@chr5:92899690..92899725, - |
| 1.04e-17 | FFCP PHASE2:Hg19::chr8:73387046..73387050,-#_011f8fdf1a2512c5a49224865dd0cffc | p@chr8:73387046..73387050, - |
| 1.04e-17 | FFCP PHASE1:Hg19::chr8:73387046..73387050,-#_011f8fdf1a2512c5a49224865dd0cffc | p@chr8:73387046..73387050, - |
