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{{DOID
{{DOID
|id=DOID:0060084
|alt_id=
|name=cell type benign neoplasm
|namespace=disease_ontology
|def="A benign neoplasm that is classified by the type of cell or tissue from which it is derived." [url:http\://en.wikipedia.org/wiki/Benign_tumor]
|xref=
|is_a=DOID:0060072
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=lschriml
|created_by=lschriml
|obo_creation_date=2011-07-14T11:59:48Z
|def="A benign neoplasm that is classified by the type of cell or tissue from which it is derived." [url:http://en.wikipedia.org/wiki/Benign_tumor]
|subset=
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|is_obsolete=
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|name=cell type benign neoplasm
|namespace=FANTOM
|obo_creation_date=2011-07-14T11:59:48Z
|part_of=
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|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
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}}

Latest revision as of 16:48, 12 September 2014

Name:cell type benign neoplasm
Namespace:FANTOM
Definition:"A benign neoplasm that is classified by the type of cell or tissue from which it is derived." [url:http://en.wikipedia.org/wiki/Benign_tumor]
Created by:lschriml
Creation date:2011-07-14T11:59:48Z

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:DOID:0060072(benign neoplasm)



Children


is a:DOID:127 (leiomyoma),DOID:255 (hemangioma),DOID:2615 (papilloma)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

Mouse (Mus musculus)

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:0060084 (cell type benign neoplasm), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.41e-147FFCP PHASE1:Hg19::chr3:132975986..132975997,-#_b27cdd33379734f7d2ccae287b408ef5p1@uc003epl.2
5.41e-147FFCP PHASE2:Hg19::chr3:132975986..132975997,-#_b27cdd33379734f7d2ccae287b408ef5p1@uc003epl.2
8.98e-131FFCP PHASE2:Hg19::chr1:152842532..152842539,+#_f7b4a2a363b6b6d43cd143c9de545242p@chr1:152842532..152842539, +
8.98e-131FFCP PHASE2:Hg19::chr1:152842546..152842554,+#_f7b4a2a363b6b6d43cd143c9de545242p@chr1:152842546..152842554, +
8.98e-131FFCP PHASE1:Hg19::chr1:152842532..152842539,+#_f7b4a2a363b6b6d43cd143c9de545242p@chr1:152842532..152842539, +
8.98e-131FFCP PHASE1:Hg19::chr1:152842546..152842554,+#_f7b4a2a363b6b6d43cd143c9de545242p@chr1:152842546..152842554, +
2.33e-118FFCP PHASE1:Hg19::chr3:132976005..132976010,-#_f555932bf39d69a839a6ba1418d480a0p2@ENST00000505721
2.33e-118FFCP PHASE2:Hg19::chr3:132976005..132976010,-#_f555932bf39d69a839a6ba1418d480a0p2@ENST00000505721
3.48e-118FFCP PHASE2:Hg19::chr2:218192886..218192899,-#_70762f448ad82860d79672710b2da202p@chr2:218192886..218192899, -
3.48e-118FFCP PHASE1:Hg19::chr2:218192886..218192899,-#_70762f448ad82860d79672710b2da202p@chr2:218192886..218192899, -
5.41e-85FFCP PHASE1:Hg19::chr8:42037558..42037573,-#_2cf9f6f28a1a218ef35b3083f7255899p@chr8:42037558..42037573, -
5.41e-85FFCP PHASE2:Hg19::chr8:42037558..42037573,-#_2cf9f6f28a1a218ef35b3083f7255899p@chr8:42037558..42037573, -
1.28e-84FFCP PHASE1:Hg19::chr3:141150971..141150978,+#_8cc5c6c300605e25ce1abcb7e4dda252p60@ZBTB38
1.28e-84FFCP PHASE2:Hg19::chr3:141150971..141150978,+#_8cc5c6c300605e25ce1abcb7e4dda252p60@ZBTB38
2.39e-66FFCP PHASE2:Hg19::chr2:218192853..218192858,-#_2a39caa533d592507ab8897ee55a4304p@chr2:218192853..218192858, -
2.39e-66FFCP PHASE1:Hg19::chr2:218192853..218192858,-#_2a39caa533d592507ab8897ee55a4304p@chr2:218192853..218192858, -
4.68e-66FFCP PHASE1:Hg19::chr1:163045452..163045464,+#_dd02dece8a5c34fd1cbd8004eaae70f9p@chr1:163045452..163045464, +
4.68e-66FFCP PHASE2:Hg19::chr1:163045452..163045464,+#_dd02dece8a5c34fd1cbd8004eaae70f9p@chr1:163045452..163045464, +
2.43e-60FFCP PHASE2:Hg19::chr22:44708774..44708788,-#_8d922b1a01f7244629a34014afeb6a22p3@KIAA1644
2.43e-60FFCP PHASE1:Hg19::chr22:44708774..44708788,-#_8d922b1a01f7244629a34014afeb6a22p3@KIAA1644
4.17e-55FFCP PHASE2:Hg19::chr2:207406777..207406786,+#_304bcde8aaeeca946ba68e59bd560f91p9@ADAM23
4.17e-55FFCP PHASE1:Hg19::chr2:207406777..207406786,+#_304bcde8aaeeca946ba68e59bd560f91p9@ADAM23
1.41e-46FFCP PHASE2:Hg19::chr8:42040287..42040298,-#_5f11ec06c50a04660e4d7a653eb7a7ebp10@PLAT
1.41e-46FFCP PHASE1:Hg19::chr8:42040287..42040298,-#_5f11ec06c50a04660e4d7a653eb7a7ebp10@PLAT
9.77e-45FFCP PHASE2:Hg19::chr7:12134329..12134354,-#_43e823fd186ab0135b8e96cf5acfba15p@chr7:12134329..12134354, -
9.77e-45FFCP PHASE1:Hg19::chr7:12134329..12134354,-#_43e823fd186ab0135b8e96cf5acfba15p@chr7:12134329..12134354, -
9.77e-45FFCP PHASE2:Hg19::chr2:218193183..218193196,-#_43e823fd186ab0135b8e96cf5acfba15p@chr2:218193183..218193196, -
9.77e-45FFCP PHASE1:Hg19::chr2:218193183..218193196,-#_43e823fd186ab0135b8e96cf5acfba15p@chr2:218193183..218193196, -
6.94e-44FFCP PHASE1:Hg19::chr6:86200265..86200276,+#_adcd956d86c47f10f238d8331566d297p@chr6:86200265..86200276, +
6.94e-44FFCP PHASE2:Hg19::chr6:86200265..86200276,+#_adcd956d86c47f10f238d8331566d297p@chr6:86200265..86200276, +
1.23e-38FFCP PHASE2:Hg19::chrX:7077952..7077959,+#_44a2c872580c742db9ba058f00b8fe69p18@STS
1.23e-38FFCP PHASE1:Hg19::chrX:7077952..7077959,+#_44a2c872580c742db9ba058f00b8fe69p18@STS
1.85e-36FFCP PHASE2:Hg19::chr6:86204236..86204247,+#_13cf4724976c6dc35fae1ea3199cf9e4p@chr6:86204236..86204247, +
1.85e-36FFCP PHASE1:Hg19::chr6:86204236..86204247,+#_13cf4724976c6dc35fae1ea3199cf9e4p@chr6:86204236..86204247, +
2.98e-36FFCP PHASE2:Hg19::chr1:198203826..198203841,+#_ec5f480cbc6ecc7c326b28ddf4090a35p@chr1:198203826..198203841, +
2.98e-36FFCP PHASE1:Hg19::chr1:198203826..198203841,+#_ec5f480cbc6ecc7c326b28ddf4090a35p@chr1:198203826..198203841, +
4.66e-34FFCP PHASE1:Hg19::chr13:32313685..32313699,+#_9297d4b0db4fc980e806c113e3748d82p2@RXFP2
4.66e-34FFCP PHASE2:Hg19::chr13:32313685..32313699,+#_9297d4b0db4fc980e806c113e3748d82p2@RXFP2
5.96e-34FFCP PHASE1:Hg19::chr1:46379338..46379343,+#_704ceecee2f611217932d8f960451806p13@MAST2
5.96e-34FFCP PHASE1:Hg19::chr4:187518318..187518321,-#_704ceecee2f611217932d8f960451806p53@FAT1
5.96e-34FFCP PHASE2:Hg19::chr3:132975822..132975848,-#_704ceecee2f611217932d8f960451806p@chr3:132975822..132975848, -
5.96e-34FFCP PHASE2:Hg19::chr7:12134356..12134370,-#_704ceecee2f611217932d8f960451806p@chr7:12134356..12134370, -
5.96e-34FFCP PHASE2:Hg19::chr3:132975886..132975894,-#_704ceecee2f611217932d8f960451806p1@ENST00000504993
5.96e-34FFCP PHASE2:Hg19::chr11:102712977..102712984,-#_704ceecee2f611217932d8f960451806p@chr11:102712977..102712984, -
5.96e-34FFCP PHASE2:Hg19::chr6:130763941..130763951,+#_704ceecee2f611217932d8f960451806p@chr6:130763941..130763951, +
5.96e-34FFCP PHASE1:Hg19::chr3:132975822..132975848,-#_704ceecee2f611217932d8f960451806p@chr3:132975822..132975848, -
5.96e-34FFCP PHASE1:Hg19::chr7:12134356..12134370,-#_704ceecee2f611217932d8f960451806p@chr7:12134356..12134370, -
5.96e-34FFCP PHASE1:Hg19::chr3:132975886..132975894,-#_704ceecee2f611217932d8f960451806p1@ENST00000504993
5.96e-34FFCP PHASE1:Hg19::chr11:102712977..102712984,-#_704ceecee2f611217932d8f960451806p@chr11:102712977..102712984, -
5.96e-34FFCP PHASE2:Hg19::chr1:46379338..46379343,+#_704ceecee2f611217932d8f960451806p13@MAST2
5.96e-34FFCP PHASE1:Hg19::chr6:130763941..130763951,+#_704ceecee2f611217932d8f960451806p@chr6:130763941..130763951, +
5.96e-34FFCP PHASE2:Hg19::chr4:187518318..187518321,-#_704ceecee2f611217932d8f960451806p53@FAT1
9.1e-34FFCP PHASE2:Hg19::chr13:32313658..32313668,+#_b77e877bc22477102e0f5ad74ae8c86dp3@RXFP2
9.1e-34FFCP PHASE1:Hg19::chr13:32313658..32313668,+#_b77e877bc22477102e0f5ad74ae8c86dp3@RXFP2
8.26e-33FFCP PHASE2:Hg19::chr21:30000326..30000330,+#_35e26630c95d93cb21305eb3c7fffc37p@chr21:30000326..30000330, +
8.26e-33FFCP PHASE1:Hg19::chr21:30000326..30000330,+#_35e26630c95d93cb21305eb3c7fffc37p@chr21:30000326..30000330, +
2.41e-32FFCP PHASE2:Hg19::chr6:130761678..130761702,+#_e9696078c6239f2c955b23d981c5c587p1@AB385516
2.41e-32FFCP PHASE1:Hg19::chr6:130761678..130761702,+#_e9696078c6239f2c955b23d981c5c587p1@AB385516
1.3e-31FFCP PHASE2:Hg19::chr8:42042654..42042665,-#_0a722e4b7a39d8cd7d49ce335e2d0cf6p9@PLAT
1.3e-31FFCP PHASE1:Hg19::chr8:42042654..42042665,-#_0a722e4b7a39d8cd7d49ce335e2d0cf6p9@PLAT
7.37e-31FFCP PHASE2:Hg19::chr2:220326139..220326158,+#_7f9cf95065d860d668707d0f6ce9edfbp10@SPEG
7.37e-31FFCP PHASE1:Hg19::chr2:220326139..220326158,+#_7f9cf95065d860d668707d0f6ce9edfbp10@SPEG
1.0e-30FFCP PHASE1:Hg19::chr7:27219651..27219660,-#_62693abf5dce9550272f68dbaf71ec18p4@ENST00000470747
1.0e-30FFCP PHASE2:Hg19::chr7:27219651..27219660,-#_62693abf5dce9550272f68dbaf71ec18p4@ENST00000470747
1.71e-30FFCP PHASE1:Hg19::chr8:42033253..42033264,-#_506e064d14768ad0da260a0cd28b39cdp@chr8:42033253..42033264, -
1.71e-30FFCP PHASE2:Hg19::chr8:42033253..42033264,-#_506e064d14768ad0da260a0cd28b39cdp@chr8:42033253..42033264, -
1.98e-30FFCP PHASE2:Hg19::chr3:141151044..141151053,+#_abe0afcef8d2961bc07f1aa50b43b2e0p51@ZBTB38
1.98e-30FFCP PHASE1:Hg19::chr3:141151044..141151053,+#_abe0afcef8d2961bc07f1aa50b43b2e0p51@ZBTB38
3.59e-30FFCP PHASE1:Hg19::chr10:90974443..90974454,-#_a80b2c2fe861ae77cb9f331eaa0794a2p@chr10:90974443..90974454, -
3.59e-30FFCP PHASE2:Hg19::chr10:90974443..90974454,-#_a80b2c2fe861ae77cb9f331eaa0794a2p@chr10:90974443..90974454, -
8.26e-30FFCP PHASE2:Hg19::chr7:84349931..84349955,-#_96c1b91dc0e192fb38bc73f756e2d8b7p@chr7:84349931..84349955, -
8.26e-30FFCP PHASE1:Hg19::chr7:84349931..84349955,-#_96c1b91dc0e192fb38bc73f756e2d8b7p@chr7:84349931..84349955, -
1.8e-29FFCP PHASE2:Hg19::chr9:106854088..106854104,-#_4816a7e38eabc8866e2f55d401878828p@chr9:106854088..106854104, -
1.8e-29FFCP PHASE1:Hg19::chr9:106854088..106854104,-#_4816a7e38eabc8866e2f55d401878828p@chr9:106854088..106854104, -
6.14e-29FFCP PHASE1:Hg19::chr3:98518094..98518105,-#_17967820b1fafeac29977b2c4d505ca4p39@DCBLD2
6.14e-29FFCP PHASE2:Hg19::chr3:98518094..98518105,-#_17967820b1fafeac29977b2c4d505ca4p39@DCBLD2
6.28e-29FFCP PHASE2:Hg19::chr10:90988088..90988122,-#_52e21bace1aa5bb4d2683236be2cd436p@chr10:90988088..90988122, -
6.28e-29FFCP PHASE1:Hg19::chr10:90988088..90988122,-#_52e21bace1aa5bb4d2683236be2cd436p@chr10:90988088..90988122, -
6.84e-28FFCP PHASE2:Hg19::chr1:219615990..219616001,-#_af5cd7e39f8c6aa2f803f19518dc88ddp1@ENST00000420762
6.84e-28FFCP PHASE1:Hg19::chr1:219615990..219616001,-#_af5cd7e39f8c6aa2f803f19518dc88ddp1@ENST00000420762
8.12e-28FFCP PHASE1:Hg19::chr4:6279204..6279216,+#_7f84fc9be9b5cdad16a858043d47d0edp6@WFS1
8.12e-28FFCP PHASE2:Hg19::chr4:6279204..6279216,+#_7f84fc9be9b5cdad16a858043d47d0edp6@WFS1
9.35e-28FFCP PHASE1:Hg19::chr8:42045498..42045512,-#_da9240f2c0f9be7bdb7f8b426d268aa2p6@PLAT
9.35e-28FFCP PHASE2:Hg19::chr8:42045498..42045512,-#_da9240f2c0f9be7bdb7f8b426d268aa2p6@PLAT
1.06e-27FFCP PHASE2:Hg19::chr6:17281802..17281817,+#_6d3c5473e2007b2cf185f005ce313d04p13@RBM24
1.06e-27FFCP PHASE1:Hg19::chr3:151871166..151871172,+#_6d3c5473e2007b2cf185f005ce313d04p@chr3:151871166..151871172, +
1.06e-27FFCP PHASE1:Hg19::chr6:17281802..17281817,+#_6d3c5473e2007b2cf185f005ce313d04p13@RBM24
1.06e-27FFCP PHASE2:Hg19::chr3:151871166..151871172,+#_6d3c5473e2007b2cf185f005ce313d04p@chr3:151871166..151871172, +
1.82e-27FFCP PHASE2:Hg19::chr3:69811826..69811835,+#_13c56b853b6bca00f80033add096f7d4p16@MITF
1.82e-27FFCP PHASE1:Hg19::chr3:69811826..69811835,+#_13c56b853b6bca00f80033add096f7d4p16@MITF
2.72e-27FFCP PHASE2:Hg19::chr7:129962463..129962477,+#_7258a700d3d7d81673c1831c50798954p@chr7:129962463..129962477, +
2.72e-27FFCP PHASE1:Hg19::chr7:129962463..129962477,+#_7258a700d3d7d81673c1831c50798954p@chr7:129962463..129962477, +
2.98e-27FFCP PHASE1:Hg19::chr1:163042618..163042628,+#_dbddb6737272f2a99fa74828a5a4c682p@chr1:163042618..163042628, +
2.98e-27FFCP PHASE2:Hg19::chr1:163042618..163042628,+#_dbddb6737272f2a99fa74828a5a4c682p@chr1:163042618..163042628, +
3.26e-27FFCP PHASE2:Hg19::chr12:75875762..75875778,+#_d98a9755c6da6358a94bf48c83b9ecf4p@chr12:75875762..75875778, +
3.26e-27FFCP PHASE1:Hg19::chr12:75875762..75875778,+#_d98a9755c6da6358a94bf48c83b9ecf4p@chr12:75875762..75875778, +
4.65e-27FFCP PHASE2:Hg19::chr14:76447469..76447487,-#_c7ff828390d0b37751b093746033ecf3p12@TGFB3
4.65e-27FFCP PHASE1:Hg19::chr14:76447469..76447487,-#_c7ff828390d0b37751b093746033ecf3p12@TGFB3
5.31e-27FFCP PHASE1:Hg19::chr10:90975757..90975768,-#_af6984e2a61990d78262374d98a2964cp@chr10:90975757..90975768, -
5.31e-27FFCP PHASE2:Hg19::chr10:90975757..90975768,-#_af6984e2a61990d78262374d98a2964cp@chr10:90975757..90975768, -

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