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{{DOID
{{DOID
|id=DOID:0060058
|alt_id=DOID:1033;;DOID:353
|name=lymphoma
|namespace=disease_ontology
|def="A hematologic cancer that affects lymphocytes that reside in the lymphatic system and in blood-forming organs." [url:http://en.wikipedia.org/wiki/Lymphoma, url:http://www.nlm.nih.gov/medlineplus/lymphoma.html]
|xref=MSH:D008223;;NCI:C3208;;SNOMEDCT_2010_1_31:118600007;;SNOMEDCT_2010_1_31:188676008;;SNOMEDCT_2010_1_31:188694002;;SNOMEDCT_2010_1_31:188695001;;SNOMEDCT_2010_1_31:188704004;;SNOMEDCT_2010_1_31:189959002;;SNOMEDCT_2010_1_31:189965002;;SNOMEDCT_2010_1_31:21964009;;SNOMEDCT_2010_1_31:269627002;;SNOMEDCT_2010_1_31:414628006;;UMLS_CUI:C0024299;;UMLS_CUI:C0598798
|is_a=DOID:2531
|synonym="lymphoid cancer" EXACT []
|comment=
|comment=
|alt_id=DOID:1033;;DOID:353
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A hematologic cancer that affects lymphocytes that reside in the lymphatic system and in blood-forming organs." [url:http://en.wikipedia.org/wiki/Lymphoma, url:http://www.nlm.nih.gov/medlineplus/lymphoma.html]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=DOID:0060058
|is_a=DOID:2531
|is_obsolete=
|located_in=
|located_in=
|name=lymphoma
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|is_obsolete=
|subset=
|preceded_by=
|synonym="lymphoid cancer" EXACT []
|union_of=
|xref=MSH:D008223;;NCI:C3208;;SNOMEDCT_2010_1_31:118600007;;SNOMEDCT_2010_1_31:188676008;;SNOMEDCT_2010_1_31:188694002;;SNOMEDCT_2010_1_31:188695001;;SNOMEDCT_2010_1_31:188704004;;SNOMEDCT_2010_1_31:189959002;;SNOMEDCT_2010_1_31:189965002;;SNOMEDCT_2010_1_31:21964009;;SNOMEDCT_2010_1_31:269627002;;SNOMEDCT_2010_1_31:414628006;;UMLS_CUI:C0024299;;UMLS_CUI:C0598798
}}
}}

Latest revision as of 16:47, 12 September 2014

Name:lymphoma
Namespace:FANTOM
Definition:"A hematologic cancer that affects lymphocytes that reside in the lymphatic system and in blood-forming organs." [url:http://en.wikipedia.org/wiki/Lymphoma, url:http://www.nlm.nih.gov/medlineplus/lymphoma.html]
Xrefs:
links:

MSH:D008223
NCI:C3208
SNOMEDCT_2010_1_31:118600007
SNOMEDCT_2010_1_31:188676008
SNOMEDCT_2010_1_31:188694002
SNOMEDCT_2010_1_31:188695001
SNOMEDCT_2010_1_31:188704004
SNOMEDCT_2010_1_31:189959002
SNOMEDCT_2010_1_31:189965002
SNOMEDCT_2010_1_31:21964009
SNOMEDCT_2010_1_31:269627002
SNOMEDCT_2010_1_31:414628006
UMLS_CUI:C0024299

UMLS_CUI:C0598798
Synonyms: "lymphoid cancer" EXACT []
Alt_id: DOID:1033
DOID:353

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:DOID:2531(hematologic cancer)



Children


is a:DOID:0050743 (mature T-cell and NK-cell neoplasm),DOID:0060060 (non-Hodgkin lymphoma),DOID:707 (B-cell lymphocytic neoplasm)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:0060058 (lymphoma), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.85e-98FFCP PHASE2:Hg19::chr3:31918379..31918390,-#_c3dfdc1f584befab320fd49ba060b413p10@OSBPL10
2.85e-98FFCP PHASE1:Hg19::chr3:31918379..31918390,-#_c3dfdc1f584befab320fd49ba060b413p10@OSBPL10
5.79e-79FFCP PHASE1:Hg19::chr3:31918351..31918363,-#_a854d7d18abb07167ccd84fd625cadabp13@OSBPL10
5.79e-79FFCP PHASE1:Hg19::chr12:113496099..113496108,+#_a854d7d18abb07167ccd84fd625cadabp3@AB384763
5.79e-79FFCP PHASE2:Hg19::chr3:31918351..31918363,-#_a854d7d18abb07167ccd84fd625cadabp13@OSBPL10
5.79e-79FFCP PHASE2:Hg19::chr12:113496099..113496108,+#_a854d7d18abb07167ccd84fd625cadabp3@AB384763
1.49e-64FFCP PHASE2:Hg19::chr12:113495245..113495253,+#_6f65be9d3ab0a6ec31345b13d9cda5e7p5@DTX1
1.49e-64FFCP PHASE1:Hg19::chr12:113495245..113495253,+#_6f65be9d3ab0a6ec31345b13d9cda5e7p5@DTX1
1.84e-63FFCP PHASE1:Hg19::chr5:53467645..53467648,-#_c94d8575fe24bca7c6008dfe5bcdaf3cp@chr5:53467645..53467648, -
1.84e-63FFCP PHASE2:Hg19::chr5:53467645..53467648,-#_c94d8575fe24bca7c6008dfe5bcdaf3cp@chr5:53467645..53467648, -
2.16e-63FFCP PHASE2:Hg19::chr6:88630940..88630960,-#_9ca28450796fb77202d15185510928d5p@chr6:88630940..88630960, -
2.16e-63FFCP PHASE1:Hg19::chr6:88630940..88630960,-#_9ca28450796fb77202d15185510928d5p@chr6:88630940..88630960, -
2.53e-63FFCP PHASE1:Hg19::chr12:113495715..113495725,+#_c59dad41f10e75ed80254b6dcb68b412p8@DTX1
2.53e-63FFCP PHASE2:Hg19::chr12:113495715..113495725,+#_c59dad41f10e75ed80254b6dcb68b412p8@DTX1
2.97e-63FFCP PHASE2:Hg19::chr11:2407318..2407325,+#_aa1128bd46d0344af7b39f9f651692c6p24@CD81
2.97e-63FFCP PHASE1:Hg19::chr11:2407318..2407325,+#_aa1128bd46d0344af7b39f9f651692c6p24@CD81
4.97e-62FFCP PHASE1:Hg19::chr3:31918364..31918375,-#_eef01b37498092f2ec066dae2a19b595p9@OSBPL10
4.97e-62FFCP PHASE2:Hg19::chr3:31918364..31918375,-#_eef01b37498092f2ec066dae2a19b595p9@OSBPL10
6.4e-62FFCP PHASE2:Hg19::chr3:133185620..133185631,+#_ec19b3e7180188b235af668d66a96aa5p@chr3:133185620..133185631, +
6.4e-62FFCP PHASE1:Hg19::chr3:133185620..133185631,+#_ec19b3e7180188b235af668d66a96aa5p@chr3:133185620..133185631, +
1.2e-61FFCP PHASE1:Hg19::chr12:49555310..49555317,+#_1ed6bbf14525677d19ac47e14377e303p@chr12:49555310..49555317, +
1.2e-61FFCP PHASE2:Hg19::chr12:49555310..49555317,+#_1ed6bbf14525677d19ac47e14377e303p@chr12:49555310..49555317, +
1.1e-59FFCP PHASE2:Hg19::chr16:17076780..17076785,+#_05e2437bc8ee87d3cd1b8c77dfd3cbb7p@chr16:17076780..17076785, +
1.1e-59FFCP PHASE1:Hg19::chr14:33449543..33449553,-#_05e2437bc8ee87d3cd1b8c77dfd3cbb7p@chr14:33449543..33449553, -
1.1e-59FFCP PHASE2:Hg19::chr22:22400945..22400954,-#_05e2437bc8ee87d3cd1b8c77dfd3cbb7p@chr22:22400945..22400954, -
1.1e-59FFCP PHASE2:Hg19::chr9:96029313..96029322,+#_05e2437bc8ee87d3cd1b8c77dfd3cbb7p9@WNK2
1.1e-59FFCP PHASE2:Hg19::chr12:2296630..2296642,+#_05e2437bc8ee87d3cd1b8c77dfd3cbb7p@chr12:2296630..2296642, +
1.1e-59FFCP PHASE1:Hg19::chr20:46040936..46040941,-#_05e2437bc8ee87d3cd1b8c77dfd3cbb7p5@ENST00000437920
1.1e-59FFCP PHASE1:Hg19::chr9:96030936..96030946,-#_05e2437bc8ee87d3cd1b8c77dfd3cbb7p@chr9:96030936..96030946, -
1.1e-59FFCP PHASE1:Hg19::chr8:67526476..67526487,-#_05e2437bc8ee87d3cd1b8c77dfd3cbb7p18@MYBL1
1.1e-59FFCP PHASE2:Hg19::chr16:11301814..11301825,+#_05e2437bc8ee87d3cd1b8c77dfd3cbb7p2@AK127887
1.1e-59FFCP PHASE2:Hg19::chr3:182129942..182129947,-#_05e2437bc8ee87d3cd1b8c77dfd3cbb7p@chr3:182129942..182129947, -
1.1e-59FFCP PHASE2:Hg19::chr14:33449523..33449537,-#_05e2437bc8ee87d3cd1b8c77dfd3cbb7p@chr14:33449523..33449537, -
1.1e-59FFCP PHASE2:Hg19::chr12:25157568..25157581,+#_05e2437bc8ee87d3cd1b8c77dfd3cbb7p@chr12:25157568..25157581, +
1.1e-59FFCP PHASE2:Hg19::chr3:187694197..187694208,-#_05e2437bc8ee87d3cd1b8c77dfd3cbb7p3@ENST00000446091, p3@uc003frr.1
1.1e-59FFCP PHASE1:Hg19::chr14:33449602..33449615,-#_05e2437bc8ee87d3cd1b8c77dfd3cbb7p@chr14:33449602..33449615, -
1.1e-59FFCP PHASE1:Hg19::chr1:154838149..154838194,+#_05e2437bc8ee87d3cd1b8c77dfd3cbb7p@chr1:154838149..154838194, +
1.1e-59FFCP PHASE1:Hg19::chr7:106732075..106732086,+#_05e2437bc8ee87d3cd1b8c77dfd3cbb7p10@PRKAR2B
1.1e-59FFCP PHASE2:Hg19::chr9:96030923..96030932,-#_05e2437bc8ee87d3cd1b8c77dfd3cbb7p@chr9:96030923..96030932, -
1.1e-59FFCP PHASE2:Hg19::chr3:133185639..133185654,+#_05e2437bc8ee87d3cd1b8c77dfd3cbb7p@chr3:133185639..133185654, +
1.1e-59FFCP PHASE1:Hg19::chr1:6614821..6614842,-#_05e2437bc8ee87d3cd1b8c77dfd3cbb7p3@NOL9
1.1e-59FFCP PHASE1:Hg19::chr6:150938045..150938069,+#_05e2437bc8ee87d3cd1b8c77dfd3cbb7p@chr6:150938045..150938069, +
1.1e-59FFCP PHASE1:Hg19::chr6:149188785..149188792,+#_05e2437bc8ee87d3cd1b8c77dfd3cbb7p@chr6:149188785..149188792, +
1.1e-59FFCP PHASE1:Hg19::chr21:36430055..36430067,+#_05e2437bc8ee87d3cd1b8c77dfd3cbb7p@chr21:36430055..36430067, +
1.1e-59FFCP PHASE1:Hg19::chr15:52043573..52043583,-#_05e2437bc8ee87d3cd1b8c77dfd3cbb7p16@LYSMD2
1.1e-59FFCP PHASE1:Hg19::chr12:2296630..2296642,+#_05e2437bc8ee87d3cd1b8c77dfd3cbb7p@chr12:2296630..2296642, +
1.1e-59FFCP PHASE1:Hg19::chr9:96029287..96029296,+#_05e2437bc8ee87d3cd1b8c77dfd3cbb7p15@WNK2
1.1e-59FFCP PHASE2:Hg19::chr14:33449543..33449553,-#_05e2437bc8ee87d3cd1b8c77dfd3cbb7p@chr14:33449543..33449553, -
1.1e-59FFCP PHASE2:Hg19::chr12:25179157..25179161,+#_05e2437bc8ee87d3cd1b8c77dfd3cbb7p@chr12:25179157..25179161, +
1.1e-59FFCP PHASE1:Hg19::chr20:42948601..42948615,-#_05e2437bc8ee87d3cd1b8c77dfd3cbb7p@chr20:42948601..42948615, -
1.1e-59FFCP PHASE2:Hg19::chr20:46040936..46040941,-#_05e2437bc8ee87d3cd1b8c77dfd3cbb7p5@ENST00000437920
1.1e-59FFCP PHASE2:Hg19::chr9:96030936..96030946,-#_05e2437bc8ee87d3cd1b8c77dfd3cbb7p@chr9:96030936..96030946, -
1.1e-59FFCP PHASE2:Hg19::chr8:67526476..67526487,-#_05e2437bc8ee87d3cd1b8c77dfd3cbb7p18@MYBL1
1.1e-59FFCP PHASE1:Hg19::chr16:11301790..11301804,+#_05e2437bc8ee87d3cd1b8c77dfd3cbb7p1@AK127887
1.1e-59FFCP PHASE1:Hg19::chr12:25157568..25157581,+#_05e2437bc8ee87d3cd1b8c77dfd3cbb7p@chr12:25157568..25157581, +
1.1e-59FFCP PHASE1:Hg19::chr22:22400945..22400954,-#_05e2437bc8ee87d3cd1b8c77dfd3cbb7p@chr22:22400945..22400954, -
1.1e-59FFCP PHASE1:Hg19::chr3:182129942..182129947,-#_05e2437bc8ee87d3cd1b8c77dfd3cbb7p@chr3:182129942..182129947, -
1.1e-59FFCP PHASE1:Hg19::chr9:96029313..96029322,+#_05e2437bc8ee87d3cd1b8c77dfd3cbb7p9@WNK2
1.1e-59FFCP PHASE2:Hg19::chr14:33449602..33449615,-#_05e2437bc8ee87d3cd1b8c77dfd3cbb7p@chr14:33449602..33449615, -
1.1e-59FFCP PHASE1:Hg19::chr3:187694197..187694208,-#_05e2437bc8ee87d3cd1b8c77dfd3cbb7p3@ENST00000446091, p3@uc003frr.1
1.1e-59FFCP PHASE1:Hg19::chr16:17076780..17076785,+#_05e2437bc8ee87d3cd1b8c77dfd3cbb7p@chr16:17076780..17076785, +
1.1e-59FFCP PHASE1:Hg19::chr3:133185639..133185654,+#_05e2437bc8ee87d3cd1b8c77dfd3cbb7p@chr3:133185639..133185654, +
1.1e-59FFCP PHASE1:Hg19::chr16:11301814..11301825,+#_05e2437bc8ee87d3cd1b8c77dfd3cbb7p2@AK127887
1.1e-59FFCP PHASE2:Hg19::chr1:154838149..154838194,+#_05e2437bc8ee87d3cd1b8c77dfd3cbb7p@chr1:154838149..154838194, +
1.1e-59FFCP PHASE2:Hg19::chr15:52043573..52043583,-#_05e2437bc8ee87d3cd1b8c77dfd3cbb7p16@LYSMD2
1.1e-59FFCP PHASE1:Hg19::chr14:33449523..33449537,-#_05e2437bc8ee87d3cd1b8c77dfd3cbb7p@chr14:33449523..33449537, -
1.1e-59FFCP PHASE1:Hg19::chr12:25179157..25179161,+#_05e2437bc8ee87d3cd1b8c77dfd3cbb7p@chr12:25179157..25179161, +
1.1e-59FFCP PHASE2:Hg19::chr9:96029287..96029296,+#_05e2437bc8ee87d3cd1b8c77dfd3cbb7p15@WNK2
1.1e-59FFCP PHASE2:Hg19::chr1:6614821..6614842,-#_05e2437bc8ee87d3cd1b8c77dfd3cbb7p3@NOL9
1.1e-59FFCP PHASE2:Hg19::chr7:106732075..106732086,+#_05e2437bc8ee87d3cd1b8c77dfd3cbb7p10@PRKAR2B
1.1e-59FFCP PHASE2:Hg19::chr6:150938045..150938069,+#_05e2437bc8ee87d3cd1b8c77dfd3cbb7p@chr6:150938045..150938069, +
1.1e-59FFCP PHASE1:Hg19::chr9:96030923..96030932,-#_05e2437bc8ee87d3cd1b8c77dfd3cbb7p@chr9:96030923..96030932, -
1.1e-59FFCP PHASE2:Hg19::chr20:42948601..42948615,-#_05e2437bc8ee87d3cd1b8c77dfd3cbb7p@chr20:42948601..42948615, -
1.1e-59FFCP PHASE2:Hg19::chr6:149188785..149188792,+#_05e2437bc8ee87d3cd1b8c77dfd3cbb7p@chr6:149188785..149188792, +
1.1e-59FFCP PHASE2:Hg19::chr21:36430055..36430067,+#_05e2437bc8ee87d3cd1b8c77dfd3cbb7p@chr21:36430055..36430067, +
1.1e-59FFCP PHASE2:Hg19::chr16:11301790..11301804,+#_05e2437bc8ee87d3cd1b8c77dfd3cbb7p1@AK127887
1.24e-59FFCP PHASE1:Hg19::chr12:113496125..113496146,+#_62ab79716a3681af2e9b4cc1111d7a77p1@AB384763
1.24e-59FFCP PHASE2:Hg19::chr12:113496125..113496146,+#_62ab79716a3681af2e9b4cc1111d7a77p1@AB384763
1.16e-54FFCP PHASE1:Hg19::chr20:61640680..61640707,+#_5d0c05fa1a5990ebc7261d6f68b33e7dp3@LOC63930
1.16e-54FFCP PHASE2:Hg19::chr20:61640680..61640707,+#_5d0c05fa1a5990ebc7261d6f68b33e7dp3@LOC63930
1.84e-54FFCP PHASE1:Hg19::chr12:8765396..8765408,-#_83e025f2fb805d658936dd2b72c1b581p2@AICDA
1.84e-54FFCP PHASE2:Hg19::chr12:8765396..8765408,-#_83e025f2fb805d658936dd2b72c1b581p2@AICDA
4.61e-53FFCP PHASE1:Hg19::chr21:43283523..43283544,-#_624cc05852b5ff9f6731ba73a7c6a6e8p3@PRDM15
4.61e-53FFCP PHASE2:Hg19::chr12:8765428..8765439,-#_624cc05852b5ff9f6731ba73a7c6a6e8p3@AICDA
4.61e-53FFCP PHASE2:Hg19::chr21:43283523..43283544,-#_624cc05852b5ff9f6731ba73a7c6a6e8p3@PRDM15
4.61e-53FFCP PHASE1:Hg19::chr12:8765428..8765439,-#_624cc05852b5ff9f6731ba73a7c6a6e8p3@AICDA
5.27e-53FFCP PHASE1:Hg19::chr12:122462311..122462330,-#_270628e63a43b471b320298c62f419cep@chr12:122462311..122462330, -
5.27e-53FFCP PHASE2:Hg19::chr12:122462311..122462330,-#_270628e63a43b471b320298c62f419cep@chr12:122462311..122462330, -
6.89e-53FFCP PHASE1:Hg19::chr12:113495162..113495172,+#_3625a926f8d598e0c840834679c1fed1p11@DTX1
6.89e-53FFCP PHASE2:Hg19::chr12:113495162..113495172,+#_3625a926f8d598e0c840834679c1fed1p11@DTX1
1.77e-50FFCP PHASE2:Hg19::chr11:111224162..111224190,-#_69e5b058914399846da5adebd50d6aecp@chr11:111224162..111224190, -
1.77e-50FFCP PHASE1:Hg19::chr11:111224162..111224190,-#_69e5b058914399846da5adebd50d6aecp@chr11:111224162..111224190, -
1.57e-45FFCP PHASE1:Hg19::chr16:12640952..12640965,-#_05fd3420b9ba10622250c480c68fbc33p@chr16:12640952..12640965, -
1.57e-45FFCP PHASE2:Hg19::chr16:12640952..12640965,-#_05fd3420b9ba10622250c480c68fbc33p@chr16:12640952..12640965, -
1.88e-45FFCP PHASE2:Hg19::chr4:8230897..8230923,+#_1e8a4cb23062733bb1d97a39c063b2c1p7@SH3TC1
1.88e-45FFCP PHASE1:Hg19::chr4:8230897..8230923,+#_1e8a4cb23062733bb1d97a39c063b2c1p7@SH3TC1
2.22e-45FFCP PHASE2:Hg19::chr17:9962959..9962966,-#_8e0d2112c1e5a67aed0cbc56f802bcafp@chr17:9962959..9962966, -
2.22e-45FFCP PHASE1:Hg19::chr12:111115637..111115643,-#_8e0d2112c1e5a67aed0cbc56f802bcafp@chr12:111115637..111115643, -
2.22e-45FFCP PHASE1:Hg19::chr17:9962959..9962966,-#_8e0d2112c1e5a67aed0cbc56f802bcafp@chr17:9962959..9962966, -
2.22e-45FFCP PHASE2:Hg19::chr12:111115637..111115643,-#_8e0d2112c1e5a67aed0cbc56f802bcafp@chr12:111115637..111115643, -

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