CL:1000497: Difference between revisions
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|located_in= | |located_in= | ||
|name=kidney cell | |name=kidney cell | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0002113 | |part_of=UBERON:0002113 | ||
Latest revision as of 16:47, 12 September 2014
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000548(animal cell),CL:0002371(somatic cell) |
|---|---|
| part_of: | UBERON:0002113(kidney) |
Children
| is a: | CL:0002518 (kidney epithelial cell),CL:0002681 (kidney cortical cell),CL:1000500 (kidney interstitial cell),CL:1000507 (kidney tubule cell),CL:1001318 (renal interstitial pericyte) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10411-106B6 (renal cell carcinoma cell line:OS-RC-2)
- 10466-106H7
- 10471-106I3 (renal cell carcinoma cell line:TUHR10TKB)
- 10517-107E4
- 10518-107E5
- 10519-107E6
- 10540-107G9
- 11514-119H2 (Renal Glomerular Endothelial Cells, donor1)
- 11515-119H3 (Renal Proximal Tubular Epithelial Cell, donor1)
- 11516-119H4 (Renal Cortical Epithelial Cells, donor1)
... further results Mouse (Mus musculus)
- 10411-106B6 (renal cell carcinoma cell line:OS-RC-2)
- 10466-106H7
- 10471-106I3 (renal cell carcinoma cell line:TUHR10TKB)
- 10517-107E4
- 10518-107E5
- 10519-107E6
- 10540-107G9
- 11514-119H2 (Renal Glomerular Endothelial Cells, donor1)
- 11515-119H3 (Renal Proximal Tubular Epithelial Cell, donor1)
- 11516-119H4 (Renal Cortical Epithelial Cells, donor1)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:1000497 (kidney cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.22e-81 | FFCP PHASE1:Hg19::chr10:102495147..102495159,+#_693b373b20f5431a3d2fbf06d2b45b93 | p4@PAX2 |
| 1.22e-81 | FFCP PHASE2:Hg19::chr10:102495147..102495159,+#_693b373b20f5431a3d2fbf06d2b45b93 | p4@PAX2 |
| 3.01e-77 | FFCP PHASE1:Hg19::chr2:693380..693398,+#_f84eaa32524dfc2017ab7f422b076462 | p@chr2:693380..693398, + |
| 3.01e-77 | FFCP PHASE2:Hg19::chr2:693380..693398,+#_f84eaa32524dfc2017ab7f422b076462 | p@chr2:693380..693398, + |
| 8.45e-77 | FFCP PHASE1:Hg19::chr7:27219833..27219845,-#_9954e1e099de37977e09a98815fcbf93 | p7@HOXA10 |
| 8.45e-77 | FFCP PHASE2:Hg19::chr7:27219833..27219845,-#_9954e1e099de37977e09a98815fcbf93 | p7@HOXA10 |
| 1.12e-73 | FFCP PHASE2:Hg19::chr15:66420804..66420837,-#_b2cbaf3cd1713cf51b209dec2c20dd55 | p4@MEGF11 |
| 1.12e-73 | FFCP PHASE1:Hg19::chr15:66420804..66420837,-#_b2cbaf3cd1713cf51b209dec2c20dd55 | p4@MEGF11 |
| 1.5e-71 | FFCP PHASE2:Hg19::chr1:1100457..1100470,+#_27ef40beba9daf2efbec0f0eae6a5362 | p@chr1:1100457..1100470, + |
| 1.5e-71 | FFCP PHASE1:Hg19::chr1:1100457..1100470,+#_27ef40beba9daf2efbec0f0eae6a5362 | p@chr1:1100457..1100470, + |
| 7.66e-69 | FFCP PHASE2:Hg19::chr1:81001398..81001426,+#_7e6ab29361a47e0c147ce1cb4af37a08 | p1@ENST00000418041, p1@ENST00000443104 |
| 7.66e-69 | FFCP PHASE1:Hg19::chr1:81001398..81001426,+#_7e6ab29361a47e0c147ce1cb4af37a08 | p1@ENST00000418041, p1@ENST00000443104 |
| 1.69e-67 | FFCP PHASE1:Hg19::chr9:133986782..133986794,+#_8b510df620c3fa00481e7ae0e62ffb56 | p4@AIF1L |
| 1.69e-67 | FFCP PHASE2:Hg19::chr9:133986782..133986794,+#_8b510df620c3fa00481e7ae0e62ffb56 | p4@AIF1L |
| 4.89e-63 | FFCP PHASE2:Hg19::chr18:3456189..3456200,+#_6eef30c551476012e966f08bec07620f | p@chr18:3456189..3456200, + |
| 4.89e-63 | FFCP PHASE1:Hg19::chr18:3456189..3456200,+#_6eef30c551476012e966f08bec07620f | p@chr18:3456189..3456200, + |
| 5.16e-63 | FFCP PHASE2:Hg19::chr21:41029235..41029269,+#_6fc8622b155a4f7b20ec5b2b17a75b4f | p2@B3GALT5 |
| 5.16e-63 | FFCP PHASE1:Hg19::chr21:41029235..41029269,+#_6fc8622b155a4f7b20ec5b2b17a75b4f | p2@B3GALT5 |
| 1.46e-62 | FFCP PHASE2:Hg19::chr10:102505954..102505973,+#_92ab51db238f2637e5a408e0f6597bf8 | p3@PAX2 |
| 1.46e-62 | FFCP PHASE1:Hg19::chr10:102505954..102505973,+#_92ab51db238f2637e5a408e0f6597bf8 | p3@PAX2 |
| 7.39e-61 | FFCP PHASE2:Hg19::chr17:36104873..36104903,-#_79160887379036cc1a6750c91f43dad8 | p3@HNF1B |
| 7.39e-61 | FFCP PHASE1:Hg19::chr17:36104873..36104903,-#_79160887379036cc1a6750c91f43dad8 | p3@HNF1B |
| 1.5e-58 | FFCP PHASE2:Hg19::chr20:6033532..6033548,-#_c2e3766be77d176f3ba2e19bf32a3cbf | p2@AB527789 |
| 1.5e-58 | FFCP PHASE1:Hg19::chr20:6033532..6033548,-#_c2e3766be77d176f3ba2e19bf32a3cbf | p2@AB527789 |
| 7.19e-55 | FFCP PHASE1:Hg19::chr16:86768403..86768437,+#_b68cb5e76816b50327bfb0aac8342559 | p@chr16:86768403..86768437, + |
| 7.19e-55 | FFCP PHASE2:Hg19::chr16:86768403..86768437,+#_b68cb5e76816b50327bfb0aac8342559 | p@chr16:86768403..86768437, + |
| 1.07e-54 | FFCP PHASE2:Hg19::chr7:7606139..7606151,-#_dfeffc054db93fd9ea7ac30f5405d2ae | p@chr7:7606139..7606151, - |
| 1.07e-54 | FFCP PHASE1:Hg19::chr7:7606139..7606151,-#_dfeffc054db93fd9ea7ac30f5405d2ae | p@chr7:7606139..7606151, - |
| 8.92e-54 | FFCP PHASE1:Hg19::chr21:46826248..46826282,-#_e169619e5a772d03f65546ebf878c012 | p@chr21:46826248..46826282, - |
| 8.92e-54 | FFCP PHASE2:Hg19::chr21:46826248..46826282,-#_e169619e5a772d03f65546ebf878c012 | p@chr21:46826248..46826282, - |
| 5.64e-52 | FFCP PHASE2:Hg19::chr20:6034607..6034616,-#_75a9e25b3df3f6e5fb422493220da079 | p6@LRRN4 |
| 5.64e-52 | FFCP PHASE1:Hg19::chr20:6034607..6034616,-#_75a9e25b3df3f6e5fb422493220da079 | p6@LRRN4 |
| 1.2e-51 | FFCP PHASE1:Hg19::chr10:102505493..102505546,+#_83eefcc11dcf1beda5dddf0ba54c2c5c | p2@PAX2 |
| 1.2e-51 | FFCP PHASE2:Hg19::chr10:102505493..102505546,+#_83eefcc11dcf1beda5dddf0ba54c2c5c | p2@PAX2 |
| 3.69e-51 | FFCP PHASE2:Hg19::chr9:119741711..119741743,-#_cd357b9705bf43fe71d82c9d960c0d69 | p@chr9:119741711..119741743, - |
| 3.69e-51 | FFCP PHASE1:Hg19::chr9:119741711..119741743,-#_cd357b9705bf43fe71d82c9d960c0d69 | p@chr9:119741711..119741743, - |
| 4.43e-51 | FFCP PHASE2:Hg19::chr5:74244100..74244117,+#_410a282ec95f9f2dfdbfadf25a5b39f9 | p@chr5:74244100..74244117, + |
| 4.43e-51 | FFCP PHASE1:Hg19::chr5:74244100..74244117,+#_410a282ec95f9f2dfdbfadf25a5b39f9 | p@chr5:74244100..74244117, + |
| 1.34e-48 | FFCP PHASE1:Hg19::chr16:86604624..86604648,+#_ff53ae9fe459be388862893d0b6afc42 | p@chr16:86604624..86604648, + |
| 1.34e-48 | FFCP PHASE2:Hg19::chr16:86604624..86604648,+#_ff53ae9fe459be388862893d0b6afc42 | p@chr16:86604624..86604648, + |
| 1.53e-46 | FFCP PHASE2:Hg19::chr16:3068288..3068312,-#_7123ec4c647a1965930d32107bad4838 | p2@CLDN6 |
| 1.53e-46 | FFCP PHASE1:Hg19::chr16:3068288..3068312,-#_7123ec4c647a1965930d32107bad4838 | p2@CLDN6 |
| 2.27e-46 | FFCP PHASE1:Hg19::chr20:6034576..6034592,-#_83dc478b2422a2376ce1c8417e632434 | p3@LRRN4 |
| 2.27e-46 | FFCP PHASE2:Hg19::chr20:6034576..6034592,-#_83dc478b2422a2376ce1c8417e632434 | p3@LRRN4 |
| 8.5e-46 | FFCP PHASE2:Hg19::chr17:36065029..36065045,-#_21631292b8790d1c91e5cf186528bac2 | p@chr17:36065029..36065045, - |
| 8.5e-46 | FFCP PHASE1:Hg19::chr17:36065029..36065045,-#_21631292b8790d1c91e5cf186528bac2 | p@chr17:36065029..36065045, - |
| 1.97e-44 | FFCP PHASE2:Hg19::chr9:133986807..133986821,+#_409764b8ef1efe5ffa3e6fce68f17e23 | p3@AIF1L |
| 1.97e-44 | FFCP PHASE1:Hg19::chr9:133986807..133986821,+#_409764b8ef1efe5ffa3e6fce68f17e23 | p3@AIF1L |
| 1.2e-43 | FFCP PHASE2:Hg19::chr7:140227349..140227360,-#_84077ba86846098e3f1b0c156784ac5c | p@chr7:140227349..140227360, - |
| 1.2e-43 | FFCP PHASE1:Hg19::chr7:140227349..140227360,-#_84077ba86846098e3f1b0c156784ac5c | p@chr7:140227349..140227360, - |
| 1.96e-43 | FFCP PHASE1:Hg19::chr7:27219754..27219759,-#_aa7a095191b3e79f92faa566d74e932c | p16@HOXA10 |
| 1.96e-43 | FFCP PHASE2:Hg19::chr7:27219754..27219759,-#_aa7a095191b3e79f92faa566d74e932c | p16@HOXA10 |
| 2.02e-43 | FFCP PHASE1:Hg19::chr20:6034672..6034714,-#_ddfec703367ca0197de3d1ea3b6b79ef | p2@LRRN4 |
| 2.02e-43 | FFCP PHASE2:Hg19::chr20:6034672..6034714,-#_ddfec703367ca0197de3d1ea3b6b79ef | p2@LRRN4 |
| 3.63e-43 | FFCP PHASE1:Hg19::chr10:91043420..91043437,+#_8dae49b5c7b3bcfc92959f5a6e7d8520 | p1@ENST00000444849 |
| 3.63e-43 | FFCP PHASE2:Hg19::chr10:91043420..91043437,+#_8dae49b5c7b3bcfc92959f5a6e7d8520 | p1@ENST00000444849 |
| 1.11e-42 | FFCP PHASE1:Hg19::chr11:117695415..117695426,-#_223366ac729ff3cb55cc29f8a5fce97a | p3@FXYD2 |
| 1.11e-42 | FFCP PHASE2:Hg19::chr11:117695415..117695426,-#_223366ac729ff3cb55cc29f8a5fce97a | p3@FXYD2 |
| 7.78e-42 | FFCP PHASE2:Hg19::chr7:140227303..140227330,-#_9ee1e3c19fd3f8df6a3ddd531f0655ae | p@chr7:140227303..140227330, - |
| 7.78e-42 | FFCP PHASE1:Hg19::chr7:140227303..140227330,-#_9ee1e3c19fd3f8df6a3ddd531f0655ae | p@chr7:140227303..140227330, - |
| 1.15e-41 | FFCP PHASE2:Hg19::chr2:165603346..165603357,-#_964d475d0d6c650de5872ce1f04cf4dd | p@chr2:165603346..165603357, - |
| 1.15e-41 | FFCP PHASE1:Hg19::chr2:165603346..165603357,-#_964d475d0d6c650de5872ce1f04cf4dd | p@chr2:165603346..165603357, - |
| 3.58e-41 | FFCP PHASE2:Hg19::chr20:6033140..6033181,-#_1be3a9f1cd9a28089017667cf6dd03e7 | p1@AB527789 |
| 3.58e-41 | FFCP PHASE1:Hg19::chr20:6033140..6033181,-#_1be3a9f1cd9a28089017667cf6dd03e7 | p1@AB527789 |
| 3.25e-40 | FFCP PHASE1:Hg19::chr20:6819236..6819281,+#_db0b2ec196e3ca3889a90f9695872af2 | p@chr20:6819236..6819281, + |
| 3.25e-40 | FFCP PHASE2:Hg19::chr20:6819236..6819281,+#_db0b2ec196e3ca3889a90f9695872af2 | p@chr20:6819236..6819281, + |
| 2.67e-38 | FFCP PHASE2:Hg19::chr14:57960456..57960478,-#_e6e8cf31c5967ec66534f8695c226474 | p2@C14orf105 |
| 2.67e-38 | FFCP PHASE1:Hg19::chr14:57960456..57960478,-#_e6e8cf31c5967ec66534f8695c226474 | p2@C14orf105 |
| 6.71e-38 | FFCP PHASE1:Hg19::chr9:133986740..133986750,+#_1f78d27d9e804b38776c917d25806f0e | p7@AIF1L |
| 6.71e-38 | FFCP PHASE2:Hg19::chr9:133986740..133986750,+#_1f78d27d9e804b38776c917d25806f0e | p7@AIF1L |
| 6.87e-38 | FFCP PHASE2:Hg19::chr1:47655966..47655990,-#_7121f9ce147f263ae9833cf1d4199b42 | p2@PDZK1IP1 |
| 6.87e-38 | FFCP PHASE1:Hg19::chr1:47655966..47655990,-#_7121f9ce147f263ae9833cf1d4199b42 | p2@PDZK1IP1 |
| 1.38e-37 | FFCP PHASE2:Hg19::chr15:85403302..85403304,+#_e02bfed596c2be6e189817eb60651f36 | p@chr15:85403302..85403304, + |
| 1.38e-37 | FFCP PHASE1:Hg19::chr15:85403302..85403304,+#_e02bfed596c2be6e189817eb60651f36 | p@chr15:85403302..85403304, + |
| 2.5e-37 | FFCP PHASE1:Hg19::chr7:98453821..98453843,-#_34ecbc0d6f8bc0b415b0a9f0d4d8fa99 | p@chr7:98453821..98453843, - |
| 2.5e-37 | FFCP PHASE2:Hg19::chr7:98453821..98453843,-#_34ecbc0d6f8bc0b415b0a9f0d4d8fa99 | p@chr7:98453821..98453843, - |
| 2.78e-37 | FFCP PHASE1:Hg19::chr8:21911054..21911086,+#_9e020fe1efbeb11a23e07c4e4cb15758 | p9@EPB49 |
| 2.78e-37 | FFCP PHASE2:Hg19::chr8:21911054..21911086,+#_9e020fe1efbeb11a23e07c4e4cb15758 | p9@EPB49 |
| 2.84e-37 | FFCP PHASE2:Hg19::chr20:6034598..6034603,-#_3bf10b18d61431328beb556370d3f0a5 | p7@LRRN4 |
| 2.84e-37 | FFCP PHASE1:Hg19::chr20:6034598..6034603,-#_3bf10b18d61431328beb556370d3f0a5 | p7@LRRN4 |
| 1.18e-36 | FFCP PHASE1:Hg19::chr7:47579188..47579231,-#_e22be78fd8ff6cd142afa6b7e69d9dfb | p13@TNS3 |
| 1.18e-36 | FFCP PHASE2:Hg19::chr7:47579188..47579231,-#_e22be78fd8ff6cd142afa6b7e69d9dfb | p13@TNS3 |
| 1.37e-36 | FFCP PHASE2:Hg19::chr10:102495136..102495146,+#_22b8cd3b2278926165491e6c7337123b | p8@PAX2 |
| 1.37e-36 | FFCP PHASE1:Hg19::chr10:102495136..102495146,+#_22b8cd3b2278926165491e6c7337123b | p8@PAX2 |
| 1.53e-36 | FFCP PHASE2:Hg19::chr2:108994466..108994485,+#_19ba05bca5d7bfddd9bc7ed34ddc06de | p3@SULT1C4 |
| 1.53e-36 | FFCP PHASE1:Hg19::chr2:108994466..108994485,+#_19ba05bca5d7bfddd9bc7ed34ddc06de | p3@SULT1C4 |
| 4.44e-36 | FFCP PHASE1:Hg19::chr9:71735910..71735923,+#_d294bde808f1088d226d5f879f24555f | p16@TJP2 |
| 4.44e-36 | FFCP PHASE2:Hg19::chr9:71735910..71735923,+#_d294bde808f1088d226d5f879f24555f | p16@TJP2 |
| 8.2e-36 | FFCP PHASE2:Hg19::chr1:94713418..94713436,+#_c77bc4e61aa4842ae1dfcdcd5b940386 | p1@ENST00000413103 |
| 8.2e-36 | FFCP PHASE1:Hg19::chr1:94713418..94713436,+#_c77bc4e61aa4842ae1dfcdcd5b940386 | p1@ENST00000413103 |
| 1.09e-35 | FFCP PHASE1:Hg19::chr1:20465872..20465881,+#_b6fd4d17b058290a28bba2dea4daa6d5 | p2@PLA2G2F |
| 1.09e-35 | FFCP PHASE2:Hg19::chr1:20465872..20465881,+#_b6fd4d17b058290a28bba2dea4daa6d5 | p2@PLA2G2F |
| 1.53e-35 | FFCP PHASE2:Hg19::chr20:6034828..6034857,-#_aa3866d687d9183bbcec5e8354b36da5 | p5@LRRN4 |
| 1.53e-35 | FFCP PHASE1:Hg19::chr20:6034828..6034857,-#_aa3866d687d9183bbcec5e8354b36da5 | p5@LRRN4 |
| 1.98e-35 | FFCP PHASE1:Hg19::chr11:117695449..117695466,-#_d7dd505a0513394ac3ccaeb16febe9fa | p1@FXYD2 |
| 1.98e-35 | FFCP PHASE2:Hg19::chr11:117695449..117695466,-#_d7dd505a0513394ac3ccaeb16febe9fa | p1@FXYD2 |
| 3.12e-35 | FFCP PHASE1:Hg19::chr2:31361543..31361564,-#_9aad6b4c32f6c8e50f09cefc2a4a1475 | p5@GALNT14 |
| 3.12e-35 | FFCP PHASE2:Hg19::chr2:31361543..31361564,-#_9aad6b4c32f6c8e50f09cefc2a4a1475 | p5@GALNT14 |
| 3.29e-35 | FFCP PHASE2:Hg19::chr2:31361503..31361541,-#_8440f4b31f1b50bfef148f06a1e06220 | p4@GALNT14 |
| 3.29e-35 | FFCP PHASE1:Hg19::chr2:31361503..31361541,-#_8440f4b31f1b50bfef148f06a1e06220 | p4@GALNT14 |
