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{{CL
{{CL
|id=CL:1000494
|alt_id=
|name=epithelial cell of renal tubule
|namespace=cell
|def="An epithelial cell that is part of the renal tubule." [GOC:tfm]
|xref=FMA:86785;;KUPO:0001022
|is_a=CL:0002518;;CL:1000507
|synonym="kidney tubule epithelial cell" EXACT []
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="An epithelial cell that is part of the renal tubule." [GOC:tfm]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:1000494
|is_a=CL:1000449 ;;CL:1000507
|is_obsolete=
|located_in=
|located_in=
|part_of=UBERON:0004810
|name=nephron tubule epithelial cell
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0001231;;UBERON:0004810
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|subset=
|synonym="kidney tubule epithelial cell" EXACT []
|union_of=
|xref=FMA:86785;;KUPO:0001022
}}
}}

Latest revision as of 16:47, 12 September 2014

Name:nephron tubule epithelial cell
Namespace:FANTOM
Definition:"An epithelial cell that is part of the renal tubule." [GOC:tfm]
Xrefs:
links:

FMA:86785

KUPO:0001022
Synonyms: "kidney tubule epithelial cell" EXACT []


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:1000449(epithelial cell of nephron),CL:1000507(kidney tubule cell)
part_of:UBERON:0001231(nephron tubule),UBERON:0004810(nephron tubule epithelium)



Children


is a:CL:1000615 (kidney cortex tubule cell)
derives from:FF:0000151 (human renal epithelial cell sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:1000494 (nephron tubule epithelial cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.6e-125FFCP PHASE2:Hg19::chr15:66420804..66420837,-#_a2d11ab92f4279f01742335d2a12b988p4@MEGF11
3.6e-125FFCP PHASE1:Hg19::chr15:66420804..66420837,-#_a2d11ab92f4279f01742335d2a12b988p4@MEGF11
4.27e-99FFCP PHASE1:Hg19::chr1:1100457..1100470,+#_ee899c43d147ff72e120562533739923p@chr1:1100457..1100470, +
4.27e-99FFCP PHASE2:Hg19::chr1:1100457..1100470,+#_ee899c43d147ff72e120562533739923p@chr1:1100457..1100470, +
6.34e-89FFCP PHASE2:Hg19::chr2:693380..693398,+#_8f19da73a76a06311d579cb12a15d1b0p@chr2:693380..693398, +
6.34e-89FFCP PHASE1:Hg19::chr2:693380..693398,+#_8f19da73a76a06311d579cb12a15d1b0p@chr2:693380..693398, +
6.95e-79FFCP PHASE1:Hg19::chr1:81001398..81001426,+#_d4f946b1a6981cf3c372161c078d38edp1@ENST00000418041, p1@ENST00000443104
6.95e-79FFCP PHASE2:Hg19::chr1:81001398..81001426,+#_d4f946b1a6981cf3c372161c078d38edp1@ENST00000418041, p1@ENST00000443104
1.14e-78FFCP PHASE2:Hg19::chr7:27219833..27219845,-#_130636b9ba0974e62055d58846c5a9e9p7@HOXA10
1.14e-78FFCP PHASE1:Hg19::chr7:27219833..27219845,-#_130636b9ba0974e62055d58846c5a9e9p7@HOXA10
2.82e-76FFCP PHASE2:Hg19::chr7:7606139..7606151,-#_dbf603f221799e349621fcdcd12adf4cp@chr7:7606139..7606151, -
2.82e-76FFCP PHASE1:Hg19::chr7:7606139..7606151,-#_dbf603f221799e349621fcdcd12adf4cp@chr7:7606139..7606151, -
2.46e-75FFCP PHASE1:Hg19::chr10:102505954..102505973,+#_0fa682311686e739ac5e6b33cd0778aep3@PAX2
2.46e-75FFCP PHASE2:Hg19::chr10:102505954..102505973,+#_0fa682311686e739ac5e6b33cd0778aep3@PAX2
2.88e-75FFCP PHASE1:Hg19::chr18:3456189..3456200,+#_eafdd04270e35d48af402d65c4681880p@chr18:3456189..3456200, +
2.88e-75FFCP PHASE2:Hg19::chr18:3456189..3456200,+#_eafdd04270e35d48af402d65c4681880p@chr18:3456189..3456200, +
1.48e-74FFCP PHASE1:Hg19::chr21:41029235..41029269,+#_88c062375efc512521ebb2a48ad7506ap2@B3GALT5
1.48e-74FFCP PHASE2:Hg19::chr21:41029235..41029269,+#_88c062375efc512521ebb2a48ad7506ap2@B3GALT5
2.7e-74FFCP PHASE1:Hg19::chr7:140227349..140227360,-#_5b667dc6a9975affbab8d276574fa00ap@chr7:140227349..140227360, -
2.7e-74FFCP PHASE2:Hg19::chr7:140227349..140227360,-#_5b667dc6a9975affbab8d276574fa00ap@chr7:140227349..140227360, -
5.32e-74FFCP PHASE1:Hg19::chr10:102495147..102495159,+#_8ce74231a7a1d46765ca3b053be9d3e1p4@PAX2
5.32e-74FFCP PHASE2:Hg19::chr10:102495147..102495159,+#_8ce74231a7a1d46765ca3b053be9d3e1p4@PAX2
5.85e-74FFCP PHASE1:Hg19::chr9:133986782..133986794,+#_2a2feb625af1b9699f3ea12aa81568b9p4@AIF1L
5.85e-74FFCP PHASE2:Hg19::chr9:133986782..133986794,+#_2a2feb625af1b9699f3ea12aa81568b9p4@AIF1L
1.31e-72FFCP PHASE1:Hg19::chr20:6034607..6034616,-#_dd975398345938165845a523a831f92cp6@LRRN4
1.31e-72FFCP PHASE2:Hg19::chr20:6034607..6034616,-#_dd975398345938165845a523a831f92cp6@LRRN4
1.88e-70FFCP PHASE1:Hg19::chr20:6033532..6033548,-#_5884e87b032578501ab9897dda27e9a1p2@AB527789
1.88e-70FFCP PHASE2:Hg19::chr20:6033532..6033548,-#_5884e87b032578501ab9897dda27e9a1p2@AB527789
1.06e-64FFCP PHASE1:Hg19::chr16:3068288..3068312,-#_819bed5b22c3ce4c1c2ffcdc6c707469p2@CLDN6
1.06e-64FFCP PHASE2:Hg19::chr16:3068288..3068312,-#_819bed5b22c3ce4c1c2ffcdc6c707469p2@CLDN6
2.76e-64FFCP PHASE1:Hg19::chr7:98453821..98453843,-#_480c03e34abccc64514de9d6ab0f2b18p@chr7:98453821..98453843, -
2.76e-64FFCP PHASE2:Hg19::chr7:98453821..98453843,-#_480c03e34abccc64514de9d6ab0f2b18p@chr7:98453821..98453843, -
1.24e-63FFCP PHASE2:Hg19::chr16:86604624..86604648,+#_f66b6e3c2e3c4a47f6fa518d12b2bc99p@chr16:86604624..86604648, +
1.24e-63FFCP PHASE1:Hg19::chr16:86604624..86604648,+#_f66b6e3c2e3c4a47f6fa518d12b2bc99p@chr16:86604624..86604648, +
4.48e-60FFCP PHASE1:Hg19::chr9:133986807..133986821,+#_9b038b5a322a6f53b00c27bd1f4abe11p3@AIF1L
4.48e-60FFCP PHASE2:Hg19::chr9:133986807..133986821,+#_9b038b5a322a6f53b00c27bd1f4abe11p3@AIF1L
1.1e-59FFCP PHASE1:Hg19::chr1:20465872..20465881,+#_bc533eed9d6e89d5178aaef5aa31bed0p2@PLA2G2F
1.1e-59FFCP PHASE2:Hg19::chr1:20465872..20465881,+#_bc533eed9d6e89d5178aaef5aa31bed0p2@PLA2G2F
2.05e-59FFCP PHASE1:Hg19::chr2:31361432..31361442,-#_b9fac2870f7390333933ca090c2bd37ap6@GALNT14
2.05e-59FFCP PHASE2:Hg19::chr2:31361432..31361442,-#_b9fac2870f7390333933ca090c2bd37ap6@GALNT14
8.36e-59FFCP PHASE1:Hg19::chr20:6033120..6033128,-#_bbb536a753c0205fc1a2af7d62f84c58p4@AB527789
8.36e-59FFCP PHASE2:Hg19::chr20:6033120..6033128,-#_bbb536a753c0205fc1a2af7d62f84c58p4@AB527789
7.62e-57FFCP PHASE1:Hg19::chr7:27219754..27219759,-#_7823601da81164d8b5b1140168a3c195p16@HOXA10
7.62e-57FFCP PHASE2:Hg19::chr7:27219754..27219759,-#_7823601da81164d8b5b1140168a3c195p16@HOXA10
1.32e-55FFCP PHASE1:Hg19::chr21:46826248..46826282,-#_b731af98bb3125e0c356d2b4fbfe937cp@chr21:46826248..46826282, -
1.32e-55FFCP PHASE2:Hg19::chr21:46826248..46826282,-#_b731af98bb3125e0c356d2b4fbfe937cp@chr21:46826248..46826282, -
6.62e-55FFCP PHASE1:Hg19::chr2:693362..693373,+#_4c1a8db81d0186ee6f80de24c31a5794p@chr2:693362..693373, +
6.62e-55FFCP PHASE2:Hg19::chr2:693362..693373,+#_4c1a8db81d0186ee6f80de24c31a5794p@chr2:693362..693373, +
1.99e-53FFCP PHASE2:Hg19::chr17:36104873..36104903,-#_67f6602f169e66d9a4168ffd87939238p3@HNF1B
1.99e-53FFCP PHASE1:Hg19::chr17:36104873..36104903,-#_67f6602f169e66d9a4168ffd87939238p3@HNF1B
7.76e-53FFCP PHASE1:Hg19::chr10:102505493..102505546,+#_5414e143b4e1a1ddd1374ff3e7fe0c6ap2@PAX2
7.76e-53FFCP PHASE2:Hg19::chr10:102505493..102505546,+#_5414e143b4e1a1ddd1374ff3e7fe0c6ap2@PAX2
2.69e-52FFCP PHASE1:Hg19::chr9:71735910..71735923,+#_48d3066d52ddb6a6a8849c5433620580p16@TJP2
2.69e-52FFCP PHASE2:Hg19::chr9:71735910..71735923,+#_48d3066d52ddb6a6a8849c5433620580p16@TJP2
1.51e-50FFCP PHASE1:Hg19::chr14:57960456..57960478,-#_8056fd4bac95a1c564bf1ec4d4e3e3d7p2@C14orf105
1.51e-50FFCP PHASE2:Hg19::chr14:57960456..57960478,-#_8056fd4bac95a1c564bf1ec4d4e3e3d7p2@C14orf105
2.93e-50FFCP PHASE2:Hg19::chr3:190105935..190105966,+#_756586d523701aec0b0068befd8916a7p1@CLDN16
2.93e-50FFCP PHASE1:Hg19::chr3:190105935..190105966,+#_756586d523701aec0b0068befd8916a7p1@CLDN16
4.36e-50FFCP PHASE1:Hg19::chr5:74244100..74244117,+#_7ad10ac94aab098cc26cf2ce60214a09p@chr5:74244100..74244117, +
4.36e-50FFCP PHASE2:Hg19::chr5:74244100..74244117,+#_7ad10ac94aab098cc26cf2ce60214a09p@chr5:74244100..74244117, +
4.9e-49FFCP PHASE1:Hg19::chr7:140227303..140227330,-#_eb5ced6affd2d6db0caf4090aebd17b6p@chr7:140227303..140227330, -
4.9e-49FFCP PHASE2:Hg19::chr7:140227303..140227330,-#_eb5ced6affd2d6db0caf4090aebd17b6p@chr7:140227303..140227330, -
3.7e-48FFCP PHASE2:Hg19::chr7:7606153..7606181,-#_1dd11bf5c2e4d820fa18d2cc1851984ap@chr7:7606153..7606181, -
3.7e-48FFCP PHASE1:Hg19::chr7:7606153..7606181,-#_1dd11bf5c2e4d820fa18d2cc1851984ap@chr7:7606153..7606181, -
8.06e-47FFCP PHASE1:Hg19::chr17:35293932..35293947,-#_f0fc059f2b70594dc300006c5354847cp2@ENST00000529264
8.06e-47FFCP PHASE2:Hg19::chr17:35293932..35293947,-#_f0fc059f2b70594dc300006c5354847cp2@ENST00000529264
8.19e-47FFCP PHASE1:Hg19::chr6:24358114..24358125,-#_6eb1c409f789017928b1d9e8e0c3c3f5p4@DCDC2
8.19e-47FFCP PHASE2:Hg19::chr6:24358114..24358125,-#_6eb1c409f789017928b1d9e8e0c3c3f5p4@DCDC2
1.44e-46FFCP PHASE2:Hg19::chr2:177016336..177016350,+#_48a22f059221ec81c852e31e09e027dbp1@HOXD4
1.44e-46FFCP PHASE1:Hg19::chr2:177016336..177016350,+#_48a22f059221ec81c852e31e09e027dbp1@HOXD4
3.39e-46FFCP PHASE2:Hg19::chr7:27219849..27219867,-#_282d4c2778c74d8fee673a958b2cef4dp6@HOXA10
3.39e-46FFCP PHASE1:Hg19::chr7:27219849..27219867,-#_282d4c2778c74d8fee673a958b2cef4dp6@HOXA10
5.96e-46FFCP PHASE2:Hg19::chr20:6034576..6034592,-#_19b268ee766e0cddfcf6f174f2622ebap3@LRRN4
5.96e-46FFCP PHASE1:Hg19::chr20:6034576..6034592,-#_19b268ee766e0cddfcf6f174f2622ebap3@LRRN4
1.77e-45FFCP PHASE2:Hg19::chr2:165603346..165603357,-#_4c0bd1fcadb0e312a939ab98fc28233ep@chr2:165603346..165603357, -
1.77e-45FFCP PHASE1:Hg19::chr2:165603346..165603357,-#_4c0bd1fcadb0e312a939ab98fc28233ep@chr2:165603346..165603357, -
5.1e-45FFCP PHASE1:Hg19::chr6:30890599..30890626,+#_76220e231dbd01b7aa60608d0164f4aap4@VARS2
5.1e-45FFCP PHASE2:Hg19::chr6:30890599..30890626,+#_76220e231dbd01b7aa60608d0164f4aap4@VARS2
5.13e-45FFCP PHASE2:Hg19::chr9:133986740..133986750,+#_8000ec140d6a0dbbc75d08f9f925f729p7@AIF1L
5.13e-45FFCP PHASE1:Hg19::chr9:133986740..133986750,+#_8000ec140d6a0dbbc75d08f9f925f729p7@AIF1L
5.16e-45FFCP PHASE1:Hg19::chr20:62327738..62327751,+#_d4136cccc6a5def983c76b1dd7380d6cp2@TNFRSF6B
5.16e-45FFCP PHASE2:Hg19::chr20:62327738..62327751,+#_d4136cccc6a5def983c76b1dd7380d6cp2@TNFRSF6B
6.97e-45FFCP PHASE2:Hg19::chr9:112260040..112260045,+#_9e97ea2cbb72d0af0ea41a1d8a07c4bep@chr9:112260040..112260045, +
6.97e-45FFCP PHASE1:Hg19::chr9:112260040..112260045,+#_9e97ea2cbb72d0af0ea41a1d8a07c4bep@chr9:112260040..112260045, +
7.39e-45FFCP PHASE1:Hg19::chr20:6034241..6034256,-#_38625507c20849f8bbf9c5488b58bb9ap@chr20:6034241..6034256, -
7.39e-45FFCP PHASE2:Hg19::chr20:6034241..6034256,-#_38625507c20849f8bbf9c5488b58bb9ap@chr20:6034241..6034256, -
1.28e-44FFCP PHASE1:Hg19::chr10:102505312..102505320,+#_a012c9f44b6e39dc3343153547b731c3p6@PAX2
1.28e-44FFCP PHASE2:Hg19::chr10:102505312..102505320,+#_a012c9f44b6e39dc3343153547b731c3p6@PAX2
1.67e-44FFCP PHASE2:Hg19::chr9:119741711..119741743,-#_52fe1ca10a06304f686d719d1231c582p@chr9:119741711..119741743, -
1.67e-44FFCP PHASE1:Hg19::chr9:119741711..119741743,-#_52fe1ca10a06304f686d719d1231c582p@chr9:119741711..119741743, -
4.94e-44FFCP PHASE2:Hg19::chr7:27160553..27160560,+#_00c7efeede4165c99aae62f007507325p1@ENST00000523364, p1@uc010kux.1
4.94e-44FFCP PHASE1:Hg19::chr7:27160553..27160560,+#_00c7efeede4165c99aae62f007507325p1@ENST00000523364, p1@uc010kux.1
9.32e-44FFCP PHASE2:Hg19::chr11:117688216..117688234,-#_8af1d529bb535f0d5b5b94181d437e3bp2@DSCAML1
9.32e-44FFCP PHASE1:Hg19::chr11:117688216..117688234,-#_8af1d529bb535f0d5b5b94181d437e3bp2@DSCAML1
1.2e-43FFCP PHASE1:Hg19::chr1:47655966..47655990,-#_443628df499801a74e927016ab1f68c1p2@PDZK1IP1
1.2e-43FFCP PHASE2:Hg19::chr1:47655966..47655990,-#_443628df499801a74e927016ab1f68c1p2@PDZK1IP1
1.45e-43FFCP PHASE1:Hg19::chr11:117695245..117695263,-#_93a1037bab9f5f65e2c6f5d665f3786dp7@FXYD2
1.45e-43FFCP PHASE2:Hg19::chr11:117695245..117695263,-#_93a1037bab9f5f65e2c6f5d665f3786dp7@FXYD2
5.15e-43FFCP PHASE2:Hg19::chr10:91043420..91043437,+#_277b0d60a41c461faaf03037d3f163b5p1@ENST00000444849
5.15e-43FFCP PHASE1:Hg19::chr10:91043420..91043437,+#_277b0d60a41c461faaf03037d3f163b5p1@ENST00000444849

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