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{{CL
{{CL
|id=CL:1000428
|alt_id=
|name=stem cell of epidermis
|namespace=cell
|def="A somatic stem cell that is part of the epidermis." [GOC:tfm]
|xref=FMA:70541
|is_a=CL:0000723
|synonym="epidermal stem cell" EXACT [FMA:70541]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A somatic stem cell that is part of the epidermis." [GOC:tfm]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:1000428
|is_a=CL:0000723
|is_obsolete=
|located_in=
|located_in=
|name=stem cell of epidermis
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0001003
|part_of=UBERON:0001003
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="epidermal stem cell" EXACT [FMA:70541]
|union_of=
|xref=FMA:70541
}}
}}

Latest revision as of 16:46, 12 September 2014

Name:stem cell of epidermis
Namespace:FANTOM
Definition:"A somatic stem cell that is part of the epidermis." [GOC:tfm]
Xrefs:
links:
FMA:70541
Synonyms: "epidermal stem cell" EXACT [FMA:70541]


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000723(somatic stem cell)
part_of:UBERON:0001003(skin epidermis)



Children


derives from:FF:0000071 (human hair follicle dermal papilla cell sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

  • 11271-116H2 (Hair Follicle Dermal Papilla Cells, donor1)
  • 11348-117G7 (Hair Follicle Dermal Papilla Cells, donor2)
  • 11420-118F7 (Hair Follicle Dermal Papilla Cells, donor3)

Mouse (Mus musculus)

  • 11271-116H2 (Hair Follicle Dermal Papilla Cells, donor1)
  • 11348-117G7 (Hair Follicle Dermal Papilla Cells, donor2)
  • 11420-118F7 (Hair Follicle Dermal Papilla Cells, donor3)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:1000428 (stem cell of epidermis), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.39e-66FFCP PHASE2:Hg19::chr7:127963997..127964004,-#_19bfb3ccb07ee985d324d92de2037a1fp@chr7:127963997..127964004, -
2.39e-66FFCP PHASE1:Hg19::chr7:127963997..127964004,-#_19bfb3ccb07ee985d324d92de2037a1fp@chr7:127963997..127964004, -
4.68e-66FFCP PHASE2:Hg19::chr16:85617034..85617043,-#_e74a8dd416247212b9159c41463dc576p@chr16:85617034..85617043, -
4.68e-66FFCP PHASE1:Hg19::chr16:85617034..85617043,-#_e74a8dd416247212b9159c41463dc576p@chr16:85617034..85617043, -
6.53e-66FFCP PHASE2:Hg19::chr5:174252850..174252859,+#_28b8c763cb83dd4a5bbf314ea62e8a76p@chr5:174252850..174252859, +
6.53e-66FFCP PHASE1:Hg19::chr5:174252850..174252859,+#_28b8c763cb83dd4a5bbf314ea62e8a76p@chr5:174252850..174252859, +
1.33e-60FFCP PHASE2:Hg19::chr20:940152..940156,-#_00a2661e69455ed4d3b68d9d6f68fa90p@chr20:940152..940156, -
1.33e-60FFCP PHASE1:Hg19::chr20:940152..940156,-#_00a2661e69455ed4d3b68d9d6f68fa90p@chr20:940152..940156, -
9.99e-60FFCP PHASE1:Hg19::chr1:119530682..119530692,-#_152cb757b848ff36fad73ec889d62646p10@TBX15
9.99e-60FFCP PHASE2:Hg19::chr1:119530682..119530692,-#_152cb757b848ff36fad73ec889d62646p10@TBX15
1.83e-59FFCP PHASE1:Hg19::chr17:73682761..73682766,+#_928f6bb12df57be057eebc404cd6963dp@chr17:73682761..73682766, +
1.83e-59FFCP PHASE2:Hg19::chr17:73682761..73682766,+#_928f6bb12df57be057eebc404cd6963dp@chr17:73682761..73682766, +
2.87e-53FFCP PHASE1:Hg19::chr12:2163623..2163634,+#_87044b52532a436c41217eba26f526c0p@chr12:2163623..2163634, +
2.87e-53FFCP PHASE1:Hg19::chr12:5198401..5198415,+#_87044b52532a436c41217eba26f526c0p@chr12:5198401..5198415, +
2.87e-53FFCP PHASE2:Hg19::chr12:2163623..2163634,+#_87044b52532a436c41217eba26f526c0p@chr12:2163623..2163634, +
2.87e-53FFCP PHASE2:Hg19::chr12:5198401..5198415,+#_87044b52532a436c41217eba26f526c0p@chr12:5198401..5198415, +
1.22e-44FFCP PHASE1:Hg19::chr16:85617044..85617059,-#_f924ee9e677dbaa911ee983266a110cfp@chr16:85617044..85617059, -
1.22e-44FFCP PHASE1:Hg19::chr10:15760985..15760992,-#_f924ee9e677dbaa911ee983266a110cfp@chr10:15760985..15760992, -
1.22e-44FFCP PHASE2:Hg19::chr10:15760985..15760992,-#_f924ee9e677dbaa911ee983266a110cfp@chr10:15760985..15760992, -
1.22e-44FFCP PHASE2:Hg19::chr16:85617044..85617059,-#_f924ee9e677dbaa911ee983266a110cfp@chr16:85617044..85617059, -
1.01e-38FFCP PHASE1:Hg19::chr15:39534820..39534834,+#_9b7c74bdfd4a38a5d36e0bc9587d65ecp@chr15:39534820..39534834, +
1.01e-38FFCP PHASE2:Hg19::chr15:39534820..39534834,+#_9b7c74bdfd4a38a5d36e0bc9587d65ecp@chr15:39534820..39534834, +
2.18e-38FFCP PHASE1:Hg19::chr3:147109858..147109861,+#_dd5570816af5c9e29947464964695785p@chr3:147109858..147109861, +
2.18e-38FFCP PHASE2:Hg19::chr3:147109858..147109861,+#_dd5570816af5c9e29947464964695785p@chr3:147109858..147109861, +
2.64e-38FFCP PHASE1:Hg19::chr3:147128048..147128057,+#_57623cad9cc5266ce3c528652026d073p4@AB464362
2.64e-38FFCP PHASE2:Hg19::chr3:147128048..147128057,+#_57623cad9cc5266ce3c528652026d073p4@AB464362
2.7e-38FFCP PHASE1:Hg19::chr3:147112699..147112713,-#_d39b4cd129888fb419f018ee7760e8bbp@chr3:147112699..147112713, -
2.7e-38FFCP PHASE2:Hg19::chr3:147112699..147112713,-#_d39b4cd129888fb419f018ee7760e8bbp@chr3:147112699..147112713, -
4.48e-38FFCP PHASE1:Hg19::chr21:47405885..47405896,+#_9d4fc6d6216ea14d3a15d076aa294fddp@chr21:47405885..47405896, +
4.48e-38FFCP PHASE2:Hg19::chr21:47405885..47405896,+#_9d4fc6d6216ea14d3a15d076aa294fddp@chr21:47405885..47405896, +
8.41e-38FFCP PHASE1:Hg19::chr15:80800274..80800278,-#_cb3602ad2ee95829444102b2b90602c5p@chr15:80800274..80800278, -
8.41e-38FFCP PHASE2:Hg19::chr15:80800274..80800278,-#_cb3602ad2ee95829444102b2b90602c5p@chr15:80800274..80800278, -
5.51e-34FFCP PHASE2:Hg19::chr17:38174999..38175001,+#_a0806491c974a1a445264d60bb1d88b9p8@CASC3
5.51e-34FFCP PHASE2:Hg19::chr2:235904638..235904641,-#_a0806491c974a1a445264d60bb1d88b9p@chr2:235904638..235904641, -
5.51e-34FFCP PHASE1:Hg19::chr2:235904638..235904641,-#_a0806491c974a1a445264d60bb1d88b9p@chr2:235904638..235904641, -
5.51e-34FFCP PHASE1:Hg19::chr17:38174999..38175001,+#_a0806491c974a1a445264d60bb1d88b9p8@CASC3
5.96e-34FFCP PHASE1:Hg19::chr2:30864461..30864472,+#_9564332c1daf1f3e5fc6e2008dffedadp11@LCLAT1
5.96e-34FFCP PHASE2:Hg19::chr12:69754026..69754035,+#_9564332c1daf1f3e5fc6e2008dffedadp@chr12:69754026..69754035, +
5.96e-34FFCP PHASE2:Hg19::chr4:151246994..151247003,-#_9564332c1daf1f3e5fc6e2008dffedadp@chr4:151246994..151247003, -
5.96e-34FFCP PHASE1:Hg19::chr5:53358788..53358795,-#_9564332c1daf1f3e5fc6e2008dffedadp@chr5:53358788..53358795, -
5.96e-34FFCP PHASE1:Hg19::chr8:23210765..23210805,+#_9564332c1daf1f3e5fc6e2008dffedadp@chr8:23210765..23210805, +
5.96e-34FFCP PHASE1:Hg19::chr4:151246994..151247003,-#_9564332c1daf1f3e5fc6e2008dffedadp@chr4:151246994..151247003, -
5.96e-34FFCP PHASE2:Hg19::chr13:45914842..45914847,-#_9564332c1daf1f3e5fc6e2008dffedadp14@TPT1
5.96e-34FFCP PHASE2:Hg19::chr5:53358788..53358795,-#_9564332c1daf1f3e5fc6e2008dffedadp@chr5:53358788..53358795, -
5.96e-34FFCP PHASE2:Hg19::chr9:3330877..3330914,-#_9564332c1daf1f3e5fc6e2008dffedadp@chr9:3330877..3330914, -
5.96e-34FFCP PHASE2:Hg19::chr11:6341147..6341156,-#_9564332c1daf1f3e5fc6e2008dffedadp14@PRKCDBP
5.96e-34FFCP PHASE2:Hg19::chr8:23210765..23210805,+#_9564332c1daf1f3e5fc6e2008dffedadp@chr8:23210765..23210805, +
5.96e-34FFCP PHASE1:Hg19::chr9:3330877..3330914,-#_9564332c1daf1f3e5fc6e2008dffedadp@chr9:3330877..3330914, -
5.96e-34FFCP PHASE2:Hg19::chr20:55403726..55403730,+#_9564332c1daf1f3e5fc6e2008dffedadp@chr20:55403726..55403730, +
5.96e-34FFCP PHASE2:Hg19::chr10:90750010..90750015,+#_9564332c1daf1f3e5fc6e2008dffedadp15@FAS
5.96e-34FFCP PHASE1:Hg19::chr20:55403726..55403730,+#_9564332c1daf1f3e5fc6e2008dffedadp@chr20:55403726..55403730, +
5.96e-34FFCP PHASE2:Hg19::chr15:40773537..40773544,-#_9564332c1daf1f3e5fc6e2008dffedadp1@ENST00000489027
5.96e-34FFCP PHASE1:Hg19::chr13:114108115..114108122,-#_9564332c1daf1f3e5fc6e2008dffedadp13@ADPRHL1
5.96e-34FFCP PHASE2:Hg19::chr6:26305727..26305730,-#_9564332c1daf1f3e5fc6e2008dffedadp@chr6:26305727..26305730, -
5.96e-34FFCP PHASE1:Hg19::chr6:26305727..26305730,-#_9564332c1daf1f3e5fc6e2008dffedadp@chr6:26305727..26305730, -
5.96e-34FFCP PHASE2:Hg19::chr5:150398982..150399013,-#_9564332c1daf1f3e5fc6e2008dffedadp@chr5:150398982..150399013, -
5.96e-34FFCP PHASE1:Hg19::chr13:30075330..30075333,+#_9564332c1daf1f3e5fc6e2008dffedadp@chr13:30075330..30075333, +
5.96e-34FFCP PHASE1:Hg19::chr5:150398982..150399013,-#_9564332c1daf1f3e5fc6e2008dffedadp@chr5:150398982..150399013, -
5.96e-34FFCP PHASE2:Hg19::chr9:88939319..88939326,-#_9564332c1daf1f3e5fc6e2008dffedadp25@ZCCHC6
5.96e-34FFCP PHASE1:Hg19::chr9:88939319..88939326,-#_9564332c1daf1f3e5fc6e2008dffedadp25@ZCCHC6
5.96e-34FFCP PHASE1:Hg19::chr12:69754026..69754035,+#_9564332c1daf1f3e5fc6e2008dffedadp@chr12:69754026..69754035, +
5.96e-34FFCP PHASE1:Hg19::chr11:118789349..118789355,+#_9564332c1daf1f3e5fc6e2008dffedadp@chr11:118789349..118789355, +
5.96e-34FFCP PHASE1:Hg19::chr6:168333065..168333071,+#_9564332c1daf1f3e5fc6e2008dffedadp33@MLLT4
5.96e-34FFCP PHASE1:Hg19::chr15:40773537..40773544,-#_9564332c1daf1f3e5fc6e2008dffedadp1@ENST00000489027
5.96e-34FFCP PHASE2:Hg19::chr6:168333065..168333071,+#_9564332c1daf1f3e5fc6e2008dffedadp33@MLLT4
5.96e-34FFCP PHASE2:Hg19::chr7:93928562..93928567,+#_9564332c1daf1f3e5fc6e2008dffedadp@chr7:93928562..93928567, +
5.96e-34FFCP PHASE1:Hg19::chr13:45914842..45914847,-#_9564332c1daf1f3e5fc6e2008dffedadp14@TPT1
5.96e-34FFCP PHASE1:Hg19::chr7:93928562..93928567,+#_9564332c1daf1f3e5fc6e2008dffedadp@chr7:93928562..93928567, +
5.96e-34FFCP PHASE2:Hg19::chr13:50654430..50654438,+#_9564332c1daf1f3e5fc6e2008dffedadp@chr13:50654430..50654438, +
5.96e-34FFCP PHASE2:Hg19::chr11:118789349..118789355,+#_9564332c1daf1f3e5fc6e2008dffedadp@chr11:118789349..118789355, +
5.96e-34FFCP PHASE1:Hg19::chr11:6341147..6341156,-#_9564332c1daf1f3e5fc6e2008dffedadp14@PRKCDBP
5.96e-34FFCP PHASE1:Hg19::chr3:124485247..124485272,-#_9564332c1daf1f3e5fc6e2008dffedadp@chr3:124485247..124485272, -
5.96e-34FFCP PHASE2:Hg19::chr9:35748867..35748868,-#_9564332c1daf1f3e5fc6e2008dffedadp13@GBA2
5.96e-34FFCP PHASE2:Hg19::chr13:114108115..114108122,-#_9564332c1daf1f3e5fc6e2008dffedadp13@ADPRHL1
5.96e-34FFCP PHASE1:Hg19::chr9:35748867..35748868,-#_9564332c1daf1f3e5fc6e2008dffedadp13@GBA2
5.96e-34FFCP PHASE1:Hg19::chr10:90750010..90750015,+#_9564332c1daf1f3e5fc6e2008dffedadp15@FAS
5.96e-34FFCP PHASE2:Hg19::chr2:30864461..30864472,+#_9564332c1daf1f3e5fc6e2008dffedadp11@LCLAT1
5.96e-34FFCP PHASE2:Hg19::chr13:30075330..30075333,+#_9564332c1daf1f3e5fc6e2008dffedadp@chr13:30075330..30075333, +
5.96e-34FFCP PHASE2:Hg19::chr3:124485247..124485272,-#_9564332c1daf1f3e5fc6e2008dffedadp@chr3:124485247..124485272, -
5.96e-34FFCP PHASE1:Hg19::chr13:50654430..50654438,+#_9564332c1daf1f3e5fc6e2008dffedadp@chr13:50654430..50654438, +
6.51e-34FFCP PHASE2:Hg19::chr15:90344831..90344839,-#_2ad41b860ca980214a2769b02ea6f601p@chr15:90344831..90344839, -
6.51e-34FFCP PHASE1:Hg19::chr15:90344831..90344839,-#_2ad41b860ca980214a2769b02ea6f601p@chr15:90344831..90344839, -
7.56e-34FFCP PHASE2:Hg19::chr7:1705417..1705429,+#_490b6bb3014859e9d415ec9149d18e3ep@chr7:1705417..1705429, +
7.56e-34FFCP PHASE1:Hg19::chr7:1705417..1705429,+#_490b6bb3014859e9d415ec9149d18e3ep@chr7:1705417..1705429, +
7.56e-34FFCP PHASE1:Hg19::chr3:147114993..147115013,-#_490b6bb3014859e9d415ec9149d18e3ep5@ZIC4
7.56e-34FFCP PHASE2:Hg19::chr3:147114993..147115013,-#_490b6bb3014859e9d415ec9149d18e3ep5@ZIC4
7.7e-34FFCP PHASE2:Hg19::chr3:147128031..147128038,+#_4837d887fabd05f1d8264da57f8d5237p7@AB464362
7.7e-34FFCP PHASE1:Hg19::chr3:147128031..147128038,+#_4837d887fabd05f1d8264da57f8d5237p7@AB464362
8.46e-34FFCP PHASE1:Hg19::chr3:134046037..134046050,+#_4ff268bd93421b781ee0249858706c99p@chr3:134046037..134046050, +
8.46e-34FFCP PHASE2:Hg19::chr3:134046037..134046050,+#_4ff268bd93421b781ee0249858706c99p@chr3:134046037..134046050, +
9.1e-34FFCP PHASE2:Hg19::chr17:17418548..17418557,-#_f4118ce487bb322e0da1449fdf252859p@chr17:17418548..17418557, -
9.1e-34FFCP PHASE2:Hg19::chr15:33018927..33018930,+#_f4118ce487bb322e0da1449fdf252859p@chr15:33018927..33018930, +
9.1e-34FFCP PHASE1:Hg19::chr17:17418548..17418557,-#_f4118ce487bb322e0da1449fdf252859p@chr17:17418548..17418557, -
9.1e-34FFCP PHASE1:Hg19::chr15:33018927..33018930,+#_f4118ce487bb322e0da1449fdf252859p@chr15:33018927..33018930, +
1.32e-33FFCP PHASE2:Hg19::chr7:140341251..140341265,-#_b0f50b36ed6619777696b6221bf9ce1bp3@DENND2A
1.32e-33FFCP PHASE1:Hg19::chr7:140341251..140341265,-#_b0f50b36ed6619777696b6221bf9ce1bp3@DENND2A
2.07e-33FFCP PHASE2:Hg19::chr4:107237244..107237257,+#_b0d2ac5adc5810a21ce8f23ed69b916fp8@AIMP1
2.07e-33FFCP PHASE1:Hg19::chr4:107237244..107237257,+#_b0d2ac5adc5810a21ce8f23ed69b916fp8@AIMP1
4.17e-30FFCP PHASE1:Hg19::chr19:15442274..15442284,+#_82777620220e73f1fcedfe209f26fb9dp@chr19:15442274..15442284, +
4.17e-30FFCP PHASE2:Hg19::chr19:15442274..15442284,+#_82777620220e73f1fcedfe209f26fb9dp@chr19:15442274..15442284, +

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