Personal tools

CL:1000398: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{CL
{{CL
|id=CL:1000398
|alt_id=
|name=endothelial cell of hepatic sinusoid
|namespace=cell
|def="An endothelial cell that is part of the hepatic sinusoid." [GOC:tfm]
|xref=FMA:62911
|is_a=CL:0000182;;CL:0002262
|synonym="endotheliocyte of hepatic sinusoid" EXACT [FMA:62911]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="An endothelial cell that is part of the hepatic sinusoid." [GOC:tfm]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:1000398
|is_a=CL:0000182 ;;CL:0002262
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=endothelial cell of hepatic sinusoid
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0001281
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="endotheliocyte of hepatic sinusoid" EXACT [FMA:62911]
|union_of=
|xref=FMA:62911
}}
}}

Latest revision as of 16:46, 12 September 2014

Name:endothelial cell of hepatic sinusoid
Namespace:FANTOM
Definition:"An endothelial cell that is part of the hepatic sinusoid." [GOC:tfm]
Xrefs:
links:
FMA:62911
Synonyms: "endotheliocyte of hepatic sinusoid" EXACT [FMA:62911]


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000182(hepatocyte),CL:0002262(endothelial cell of sinusoid)
part_of:UBERON:0001281(hepatic sinusoid)



Children


derives from:FF:0000076 (hepatic sinusoidal endothelial cell sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:1000398 (endothelial cell of hepatic sinusoid), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
8.99e-131FFCP PHASE1:Hg19::chr7:158330204..158330217,+#_943cb5b8d4bad56b59b1f7fa633654eap2@ENST00000448698
8.99e-131FFCP PHASE2:Hg19::chr7:158330204..158330217,+#_943cb5b8d4bad56b59b1f7fa633654eap2@ENST00000448698
3.07e-86FFCP PHASE1:Mm9::chr1:163794592..163794593,+#_e0395a4bf36a48b5d4069cec6af9a87dp@chr1:163794592..163794593, +
3.07e-86FFCP PHASE1:Mm9::chr18:65159026..65159034,-#_e0395a4bf36a48b5d4069cec6af9a87dp@chr18:65159026..65159034, -
3.07e-86FFCP PHASE1:Mm9::chr7:117101788..117101793,+#_e0395a4bf36a48b5d4069cec6af9a87dp@chr7:117101788..117101793, +
3.07e-86FFCP PHASE2:Mm9::chr18:65159026..65159034,-#_e0395a4bf36a48b5d4069cec6af9a87dp@chr18:65159026..65159034, -
3.07e-86FFCP PHASE2:Mm9::chr7:52781901..52781904,+#_e0395a4bf36a48b5d4069cec6af9a87dp@chr7:52781901..52781904, +
3.07e-86FFCP PHASE1:Mm9::chr2:169549462..169549477,+#_e0395a4bf36a48b5d4069cec6af9a87dp@chr2:169549462..169549477, +
3.07e-86FFCP PHASE1:Mm9::chr4:57687477..57687488,+#_e0395a4bf36a48b5d4069cec6af9a87dp@chr4:57687477..57687488, +
3.07e-86FFCP PHASE1:Mm9::chr15:97402708..97402712,+#_e0395a4bf36a48b5d4069cec6af9a87dp@chr15:97402708..97402712, +
3.07e-86FFCP PHASE2:Mm9::chr17:35093616..35093631,-#_e0395a4bf36a48b5d4069cec6af9a87dp@chr17:35093616..35093631, -
3.07e-86FFCP PHASE1:Mm9::chr2:133323630..133323631,+#_e0395a4bf36a48b5d4069cec6af9a87dp@chr2:133323630..133323631, +
3.07e-86FFCP PHASE1:Mm9::chr17:35106749..35106752,-#_e0395a4bf36a48b5d4069cec6af9a87dp@chr17:35106749..35106752, -
3.07e-86FFCP PHASE1:Mm9::chr1:186559285..186559288,+#_e0395a4bf36a48b5d4069cec6af9a87dp@chr1:186559285..186559288, +
3.07e-86FFCP PHASE1:Mm9::chr11:109223779..109223789,-#_e0395a4bf36a48b5d4069cec6af9a87dp@chr11:109223779..109223789, -
3.07e-86FFCP PHASE2:Mm9::chr17:24807620..24807650,-#_e0395a4bf36a48b5d4069cec6af9a87dp@chr17:24807620..24807650, -
3.07e-86FFCP PHASE1:Mm9::chr8:127816016..127816021,+#_e0395a4bf36a48b5d4069cec6af9a87dp@chr8:127816016..127816021, +
3.07e-86FFCP PHASE1:Mm9::chr4:43407825..43407830,+#_e0395a4bf36a48b5d4069cec6af9a87dp@chr4:43407825..43407830, +
3.07e-86FFCP PHASE2:Mm9::chr18:60398371..60398393,-#_e0395a4bf36a48b5d4069cec6af9a87dp@chr18:60398371..60398393, -
3.07e-86FFCP PHASE2:Mm9::chr8:89310639..89310641,-#_e0395a4bf36a48b5d4069cec6af9a87dp@chr8:89310639..89310641, -
3.07e-86FFCP PHASE2:Mm9::chr13:113542610..113542614,+#_e0395a4bf36a48b5d4069cec6af9a87dp@chr13:113542610..113542614, +
3.07e-86FFCP PHASE1:Mm9::chr1:138241693..138241697,+#_e0395a4bf36a48b5d4069cec6af9a87dp@chr1:138241693..138241697, +
3.07e-86FFCP PHASE1:Mm9::chr10:93895817..93895819,-#_e0395a4bf36a48b5d4069cec6af9a87dp@chr10:93895817..93895819, -
3.07e-86FFCP PHASE2:Mm9::chr10:93819538..93819549,+#_e0395a4bf36a48b5d4069cec6af9a87dp@chr10:93819538..93819549, +
3.07e-86FFCP PHASE1:Mm9::chr17:34798597..34798606,+#_e0395a4bf36a48b5d4069cec6af9a87dp@chr17:34798597..34798606, +
3.07e-86FFCP PHASE1:Mm9::chr12:25364645..25364655,+#_e0395a4bf36a48b5d4069cec6af9a87dp@chr12:25364645..25364655, +
3.07e-86FFCP PHASE2:Mm9::chr12:81955014..81955018,+#_e0395a4bf36a48b5d4069cec6af9a87dp@chr12:81955014..81955018, +
3.07e-86FFCP PHASE1:Mm9::chr11:68437375..68437378,+#_e0395a4bf36a48b5d4069cec6af9a87dp@chr11:68437375..68437378, +
3.07e-86FFCP PHASE2:Mm9::chr5:124112234..124112240,+#_e0395a4bf36a48b5d4069cec6af9a87dp@chr5:124112234..124112240, +
3.07e-86FFCP PHASE2:Mm9::chr8:127816016..127816021,+#_e0395a4bf36a48b5d4069cec6af9a87dp@chr8:127816016..127816021, +
3.07e-86FFCP PHASE2:Mm9::chr10:85585991..85586025,-#_e0395a4bf36a48b5d4069cec6af9a87dp@chr10:85585991..85586025, -
3.07e-86FFCP PHASE2:Mm9::chr12:85288471..85288502,+#_e0395a4bf36a48b5d4069cec6af9a87dp@chr12:85288471..85288502, +
3.07e-86FFCP PHASE1:Mm9::chr6:34549876..34549892,-#_e0395a4bf36a48b5d4069cec6af9a87dp@chr6:34549876..34549892, -
3.07e-86FFCP PHASE1:Mm9::chr18:38831400..38831402,-#_e0395a4bf36a48b5d4069cec6af9a87dp@chr18:38831400..38831402, -
3.07e-86FFCP PHASE1:Mm9::chr10:85587155..85587188,+#_e0395a4bf36a48b5d4069cec6af9a87dp@chr10:85587155..85587188, +
3.07e-86FFCP PHASE2:Mm9::chr14:8928284..8928331,+#_e0395a4bf36a48b5d4069cec6af9a87dp@chr14:8928284..8928331, +
3.07e-86FFCP PHASE1:Mm9::chr13:113542610..113542614,+#_e0395a4bf36a48b5d4069cec6af9a87dp@chr13:113542610..113542614, +
3.07e-86FFCP PHASE2:Mm9::chr10:8471698..8471701,+#_e0395a4bf36a48b5d4069cec6af9a87dp@chr10:8471698..8471701, +
3.07e-86FFCP PHASE1:Mm9::chr11:117829935..117829959,-#_e0395a4bf36a48b5d4069cec6af9a87dp@chr11:117829935..117829959, -
3.07e-86FFCP PHASE2:Mm9::chr5:53111093..53111095,+#_e0395a4bf36a48b5d4069cec6af9a87dp@chr5:53111093..53111095, +
3.07e-86FFCP PHASE2:Mm9::chr13:96429295..96429302,-#_e0395a4bf36a48b5d4069cec6af9a87dp@chr13:96429295..96429302, -
3.07e-86FFCP PHASE2:Mm9::chr12:25364645..25364655,+#_e0395a4bf36a48b5d4069cec6af9a87dp@chr12:25364645..25364655, +
3.07e-86FFCP PHASE2:Mm9::chr19:29573929..29573932,+#_e0395a4bf36a48b5d4069cec6af9a87dp@chr19:29573929..29573932, +
3.07e-86FFCP PHASE1:Mm9::chr7:87919399..87919406,+#_e0395a4bf36a48b5d4069cec6af9a87dp@chr7:87919399..87919406, +
3.07e-86FFCP PHASE2:Mm9::chr18:35900327..35900366,+#_e0395a4bf36a48b5d4069cec6af9a87dp@chr18:35900327..35900366, +
3.07e-86FFCP PHASE2:Mm9::chr4:57687477..57687488,+#_e0395a4bf36a48b5d4069cec6af9a87dp@chr4:57687477..57687488, +
3.07e-86FFCP PHASE1:Mm9::chr6:92938260..92938264,-#_e0395a4bf36a48b5d4069cec6af9a87dp@chr6:92938260..92938264, -
3.07e-86FFCP PHASE2:Mm9::chr8:25530071..25530072,+#_e0395a4bf36a48b5d4069cec6af9a87dp@chr8:25530071..25530072, +
3.07e-86FFCP PHASE2:Mm9::chr12:74684893..74684910,-#_e0395a4bf36a48b5d4069cec6af9a87dp@chr12:74684893..74684910, -
3.07e-86FFCP PHASE2:Mm9::chr4:126939557..126939562,+#_e0395a4bf36a48b5d4069cec6af9a87dp@chr4:126939557..126939562, +
3.07e-86FFCP PHASE1:Mm9::chr13:5840965..5840966,+#_e0395a4bf36a48b5d4069cec6af9a87dp@chr13:5840965..5840966, +
3.07e-86FFCP PHASE1:Mm9::chr5:33088768..33088773,+#_e0395a4bf36a48b5d4069cec6af9a87dp@chr5:33088768..33088773, +
3.07e-86FFCP PHASE2:Mm9::chr17:34798555..34798562,+#_e0395a4bf36a48b5d4069cec6af9a87dp@chr17:34798555..34798562, +
3.07e-86FFCP PHASE2:Mm9::chr16:91441786..91441787,-#_e0395a4bf36a48b5d4069cec6af9a87dp@chr16:91441786..91441787, -
3.07e-86FFCP PHASE1:Mm9::chr18:44793802..44793835,+#_e0395a4bf36a48b5d4069cec6af9a87dp@chr18:44793802..44793835, +
3.07e-86FFCP PHASE2:Mm9::chr14:15179132..15179141,+#_e0395a4bf36a48b5d4069cec6af9a87dp8@Il3ra
3.07e-86FFCP PHASE1:Mm9::chr1:173044327..173044331,+#_e0395a4bf36a48b5d4069cec6af9a87dp@chr1:173044327..173044331, +
3.07e-86FFCP PHASE1:Mm9::chr14:8928284..8928331,+#_e0395a4bf36a48b5d4069cec6af9a87dp@chr14:8928284..8928331, +
3.07e-86FFCP PHASE2:Mm9::chr11:118287827..118287833,-#_e0395a4bf36a48b5d4069cec6af9a87dp@chr11:118287827..118287833, -
3.07e-86FFCP PHASE2:Mm9::chr6:129180613..129180616,+#_e0395a4bf36a48b5d4069cec6af9a87dp@chr6:129180613..129180616, +
3.07e-86FFCP PHASE1:Mm9::chr11:118287827..118287833,-#_e0395a4bf36a48b5d4069cec6af9a87dp@chr11:118287827..118287833, -
3.07e-86FFCP PHASE1:Mm9::chr4:86335502..86335509,+#_e0395a4bf36a48b5d4069cec6af9a87dp@chr4:86335502..86335509, +
3.07e-86FFCP PHASE1:Mm9::chr10:8471698..8471701,+#_e0395a4bf36a48b5d4069cec6af9a87dp@chr10:8471698..8471701, +
3.07e-86FFCP PHASE2:Mm9::chr4:137487112..137487117,+#_e0395a4bf36a48b5d4069cec6af9a87dp@chr4:137487112..137487117, +
3.07e-86FFCP PHASE1:Mm9::chr2:84756280..84756286,+#_e0395a4bf36a48b5d4069cec6af9a87dp@chr2:84756280..84756286, +
3.07e-86FFCP PHASE2:Mm9::chr10:94580525..94580530,+#_e0395a4bf36a48b5d4069cec6af9a87dp@chr10:94580525..94580530, +
3.07e-86FFCP PHASE2:Mm9::chr12:8400090..8400093,+#_e0395a4bf36a48b5d4069cec6af9a87dp@chr12:8400090..8400093, +
3.07e-86FFCP PHASE2:Mm9::chr1:173044327..173044331,+#_e0395a4bf36a48b5d4069cec6af9a87dp@chr1:173044327..173044331, +
3.07e-86FFCP PHASE2:Mm9::chr9:42915101..42915106,-#_e0395a4bf36a48b5d4069cec6af9a87dp@chr9:42915101..42915106, -
3.07e-86FFCP PHASE2:Mm9::chr5:32912678..32912687,+#_e0395a4bf36a48b5d4069cec6af9a87dp@chr5:32912678..32912687, +
3.07e-86FFCP PHASE2:Mm9::chr17:35093764..35093773,-#_e0395a4bf36a48b5d4069cec6af9a87dp@chr17:35093764..35093773, -
3.07e-86FFCP PHASE1:Mm9::chr15:32178407..32178408,-#_e0395a4bf36a48b5d4069cec6af9a87dp@chr15:32178407..32178408, -
3.07e-86FFCP PHASE2:Mm9::chr10:8586393..8586401,+#_e0395a4bf36a48b5d4069cec6af9a87dp@chr10:8586393..8586401, +
3.07e-86FFCP PHASE2:Mm9::chr10:117419958..117419964,+#_e0395a4bf36a48b5d4069cec6af9a87dp@chr10:117419958..117419964, +
3.07e-86FFCP PHASE1:Mm9::chr12:86691503..86691504,-#_e0395a4bf36a48b5d4069cec6af9a87dp@chr12:86691503..86691504, -
3.07e-86FFCP PHASE2:Mm9::chr13:113543694..113543702,-#_e0395a4bf36a48b5d4069cec6af9a87dp@chr13:113543694..113543702, -
3.07e-86FFCP PHASE2:Mm9::chr11:117737077..117737096,-#_e0395a4bf36a48b5d4069cec6af9a87dp@chr11:117737077..117737096, -
3.07e-86FFCP PHASE1:Mm9::chr10:93942324..93942342,-#_e0395a4bf36a48b5d4069cec6af9a87dp@chr10:93942324..93942342, -
3.07e-86FFCP PHASE2:Mm9::chr10:93895817..93895819,-#_e0395a4bf36a48b5d4069cec6af9a87dp@chr10:93895817..93895819, -
3.07e-86FFCP PHASE1:Mm9::chr2:11935531..11935538,-#_e0395a4bf36a48b5d4069cec6af9a87dp@chr2:11935531..11935538, -
3.07e-86FFCP PHASE1:Mm9::chr17:35093377..35093381,+#_e0395a4bf36a48b5d4069cec6af9a87dp@chr17:35093377..35093381, +
3.07e-86FFCP PHASE2:Mm9::chr7:87919399..87919406,+#_e0395a4bf36a48b5d4069cec6af9a87dp@chr7:87919399..87919406, +
3.07e-86FFCP PHASE2:Mm9::chr9:62199266..62199267,+#_e0395a4bf36a48b5d4069cec6af9a87dp@chr9:62199266..62199267, +
3.07e-86FFCP PHASE2:Mm9::chr10:85586219..85586227,+#_e0395a4bf36a48b5d4069cec6af9a87dp@chr10:85586219..85586227, +
3.07e-86FFCP PHASE2:Mm9::chr3:9705000..9705004,-#_e0395a4bf36a48b5d4069cec6af9a87dp4@Pag1
3.07e-86FFCP PHASE2:Mm9::chr1:66883923..66883955,-#_e0395a4bf36a48b5d4069cec6af9a87dp@chr1:66883923..66883955, -
3.07e-86FFCP PHASE2:Mm9::chr17:67870501..67870507,+#_e0395a4bf36a48b5d4069cec6af9a87dp@chr17:67870501..67870507, +
3.07e-86FFCP PHASE2:Mm9::chr8:87745380..87745385,+#_e0395a4bf36a48b5d4069cec6af9a87dp@chr8:87745380..87745385, +
3.07e-86FFCP PHASE1:Mm9::chr17:24807620..24807650,-#_e0395a4bf36a48b5d4069cec6af9a87dp@chr17:24807620..24807650, -
3.07e-86FFCP PHASE1:Mm9::chr15:82193340..82193343,+#_e0395a4bf36a48b5d4069cec6af9a87dp@chr15:82193340..82193343, +
3.07e-86FFCP PHASE1:Mm9::chr18:39297570..39297573,-#_e0395a4bf36a48b5d4069cec6af9a87dp@chr18:39297570..39297573, -
3.07e-86FFCP PHASE1:Mm9::chr14:15179132..15179141,+#_e0395a4bf36a48b5d4069cec6af9a87dp8@Il3ra
3.07e-86FFCP PHASE2:Mm9::chr2:11935531..11935538,-#_e0395a4bf36a48b5d4069cec6af9a87dp@chr2:11935531..11935538, -
3.07e-86FFCP PHASE2:Mm9::chr7:118133901..118133904,-#_e0395a4bf36a48b5d4069cec6af9a87dp@chr7:118133901..118133904, -
3.07e-86FFCP PHASE1:Mm9::chr8:87745380..87745385,+#_e0395a4bf36a48b5d4069cec6af9a87dp@chr8:87745380..87745385, +
3.07e-86FFCP PHASE1:Mm9::chr13:113543694..113543702,-#_e0395a4bf36a48b5d4069cec6af9a87dp@chr13:113543694..113543702, -
3.07e-86FFCP PHASE2:Mm9::chr10:60279719..60279737,-#_e0395a4bf36a48b5d4069cec6af9a87dp@chr10:60279719..60279737, -
3.07e-86FFCP PHASE1:Mm9::chr8:3311867..3311873,+#_e0395a4bf36a48b5d4069cec6af9a87dp@chr8:3311867..3311873, +
3.07e-86FFCP PHASE1:Mm9::chr18:35881716..35881727,-#_e0395a4bf36a48b5d4069cec6af9a87dp@chr18:35881716..35881727, -
3.07e-86FFCP PHASE1:Mm9::chr13:96429295..96429302,-#_e0395a4bf36a48b5d4069cec6af9a87dp@chr13:96429295..96429302, -

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=CL:1000398&oldid=3275577"