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{{CL
{{CL
|id=CL:0002553
|alt_id=
|name=fibroblast of lung
|namespace=cell
|def="A fibroblast that is part of lung." [GOC:tfm]
|xref=BTO:0000764
|is_a=CL:0000057
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=tmeehan
|created_by=tmeehan
|obo_creation_date=2011-02-28T05:11:03Z
|def="A fibroblast that is part of lung." [GOC:tfm]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0002553
|is_a=CL:0000057 ;;CL_0000057
|is_obsolete=
|located_in=
|located_in=
|name=lung fibroblast
|namespace=FANTOM
|obo_creation_date=2011-02-28T05:11:03Z
|part_of=UBERON:0002048
|part_of=UBERON:0002048
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|subset=
|synonym=
|union_of=
|xref=BTO:0000764
}}
}}

Latest revision as of 16:44, 12 September 2014

Name:lung fibroblast
Namespace:FANTOM
Definition:"A fibroblast that is part of lung." [GOC:tfm]
Xrefs:
links:
BTO:0000764
Created by:tmeehan
Creation date:2011-02-28T05:11:03Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000057(fibroblast),CL_0000057()
part_of:UBERON:0002048(lung)



Children


is a:FF:10730-110B1 (non-small cell lung cancer cell line:NCI-H1385)
derives from:FF:0000064 (human fibroblast of lung sample),FF:0100161 (lung fibroblast cell line sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002553 (lung fibroblast), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE2:Hg19::chr4:93512357..93512364,+#_1f6119cd07eee58613b0c3b98b0b66f9p@chr4:93512357..93512364, +
5.42e-195FFCP PHASE1:Hg19::chr4:93512357..93512364,+#_1f6119cd07eee58613b0c3b98b0b66f9p@chr4:93512357..93512364, +
5.42e-195FFCP PHASE2:Hg19::chr18:63412128..63412151,+#_1f6119cd07eee58613b0c3b98b0b66f9p@chr18:63412128..63412151, +
5.42e-195FFCP PHASE2:Hg19::chr8:13988549..13988555,+#_1f6119cd07eee58613b0c3b98b0b66f9p@chr8:13988549..13988555, +
5.42e-195FFCP PHASE2:Hg19::chr18:63412228..63412270,+#_1f6119cd07eee58613b0c3b98b0b66f9p@chr18:63412228..63412270, +
5.42e-195FFCP PHASE1:Hg19::chr18:63412128..63412151,+#_1f6119cd07eee58613b0c3b98b0b66f9p@chr18:63412128..63412151, +
5.42e-195FFCP PHASE1:Hg19::chr8:13988549..13988555,+#_1f6119cd07eee58613b0c3b98b0b66f9p@chr8:13988549..13988555, +
5.42e-195FFCP PHASE1:Hg19::chr18:63412228..63412270,+#_1f6119cd07eee58613b0c3b98b0b66f9p@chr18:63412228..63412270, +
9.37e-99FFCP PHASE1:Hg19::chr2:115918789..115918795,-#_f1d55c7b75671969cd2bcbf3f2aa4fabp3@ENST00000448663
9.37e-99FFCP PHASE1:Hg19::chr6:28479346..28479352,+#_f1d55c7b75671969cd2bcbf3f2aa4fabp@chr6:28479346..28479352, +
9.37e-99FFCP PHASE2:Hg19::chr8:114449612..114449615,-#_f1d55c7b75671969cd2bcbf3f2aa4fabp10@CSMD3
9.37e-99FFCP PHASE1:Hg19::chr11:13809056..13809057,+#_f1d55c7b75671969cd2bcbf3f2aa4fabp@chr11:13809056..13809057, +
9.37e-99FFCP PHASE1:Hg19::chr8:114449612..114449615,-#_f1d55c7b75671969cd2bcbf3f2aa4fabp10@CSMD3
9.37e-99FFCP PHASE2:Hg19::chr1:246382944..246382951,-#_f1d55c7b75671969cd2bcbf3f2aa4fabp@chr1:246382944..246382951, -
9.37e-99FFCP PHASE2:Hg19::chr4:116434644..116434654,+#_f1d55c7b75671969cd2bcbf3f2aa4fabp@chr4:116434644..116434654, +
9.37e-99FFCP PHASE2:Hg19::chr11:13809056..13809057,+#_f1d55c7b75671969cd2bcbf3f2aa4fabp@chr11:13809056..13809057, +
9.37e-99FFCP PHASE1:Hg19::chr4:116434644..116434654,+#_f1d55c7b75671969cd2bcbf3f2aa4fabp@chr4:116434644..116434654, +
9.37e-99FFCP PHASE2:Hg19::chr6:28479346..28479352,+#_f1d55c7b75671969cd2bcbf3f2aa4fabp@chr6:28479346..28479352, +
9.37e-99FFCP PHASE2:Hg19::chr2:115918789..115918795,-#_f1d55c7b75671969cd2bcbf3f2aa4fabp3@ENST00000448663
9.37e-99FFCP PHASE1:Hg19::chr1:246382944..246382951,-#_f1d55c7b75671969cd2bcbf3f2aa4fabp@chr1:246382944..246382951, -
2.55e-98FFCP PHASE1:Hg19::chr10:22657523..22657534,+#_d6ea3cce7706220617c0ae8f951cc8c4p@chr10:22657523..22657534, +
2.55e-98FFCP PHASE2:Hg19::chr13:110782380..110782393,-#_d6ea3cce7706220617c0ae8f951cc8c4p@chr13:110782380..110782393, -
2.55e-98FFCP PHASE2:Hg19::chr8:114449616..114449629,-#_d6ea3cce7706220617c0ae8f951cc8c4p3@CSMD3
2.55e-98FFCP PHASE2:Hg19::chr7:157944243..157944249,-#_d6ea3cce7706220617c0ae8f951cc8c4p@chr7:157944243..157944249, -
2.55e-98FFCP PHASE2:Hg19::chr10:22657489..22657502,+#_d6ea3cce7706220617c0ae8f951cc8c4p@chr10:22657489..22657502, +
2.55e-98FFCP PHASE2:Hg19::chr6:18208412..18208420,+#_d6ea3cce7706220617c0ae8f951cc8c4p@chr6:18208412..18208420, +
2.55e-98FFCP PHASE2:Hg19::chr7:25354153..25354185,+#_d6ea3cce7706220617c0ae8f951cc8c4p@chr7:25354153..25354185, +
2.55e-98FFCP PHASE1:Hg19::chr7:157944243..157944249,-#_d6ea3cce7706220617c0ae8f951cc8c4p@chr7:157944243..157944249, -
2.55e-98FFCP PHASE2:Hg19::chrX:118161803..118161808,-#_d6ea3cce7706220617c0ae8f951cc8c4p@chrX:118161803..118161808, -
2.55e-98FFCP PHASE2:Hg19::chr10:22657523..22657534,+#_d6ea3cce7706220617c0ae8f951cc8c4p@chr10:22657523..22657534, +
2.55e-98FFCP PHASE1:Hg19::chr13:110782380..110782393,-#_d6ea3cce7706220617c0ae8f951cc8c4p@chr13:110782380..110782393, -
2.55e-98FFCP PHASE1:Hg19::chr8:114449616..114449629,-#_d6ea3cce7706220617c0ae8f951cc8c4p3@CSMD3
2.55e-98FFCP PHASE1:Hg19::chr7:25354153..25354185,+#_d6ea3cce7706220617c0ae8f951cc8c4p@chr7:25354153..25354185, +
2.55e-98FFCP PHASE1:Hg19::chr6:18208412..18208420,+#_d6ea3cce7706220617c0ae8f951cc8c4p@chr6:18208412..18208420, +
2.55e-98FFCP PHASE1:Hg19::chr10:22657489..22657502,+#_d6ea3cce7706220617c0ae8f951cc8c4p@chr10:22657489..22657502, +
2.55e-98FFCP PHASE1:Hg19::chrX:118161803..118161808,-#_d6ea3cce7706220617c0ae8f951cc8c4p@chrX:118161803..118161808, -
1.23e-66FFCP PHASE2:Hg19::chr11:69518332..69518343,-#_4859e9cc68bb844d16be3516852e2527p@chr11:69518332..69518343, -
1.23e-66FFCP PHASE2:Hg19::chr1:168356398..168356401,+#_4859e9cc68bb844d16be3516852e2527p@chr1:168356398..168356401, +
1.23e-66FFCP PHASE1:Hg19::chr10:5407085..5407093,+#_4859e9cc68bb844d16be3516852e2527p5@UCN3
1.23e-66FFCP PHASE1:Hg19::chr11:69518108..69518118,-#_4859e9cc68bb844d16be3516852e2527p@chr11:69518108..69518118, -
1.23e-66FFCP PHASE1:Hg19::chr1:168356398..168356401,+#_4859e9cc68bb844d16be3516852e2527p@chr1:168356398..168356401, +
1.23e-66FFCP PHASE2:Hg19::chr18:63418785..63418796,+#_4859e9cc68bb844d16be3516852e2527p@chr18:63418785..63418796, +
1.23e-66FFCP PHASE2:Hg19::chr1:239571457..239571466,+#_4859e9cc68bb844d16be3516852e2527p18@CHRM3
1.23e-66FFCP PHASE2:Hg19::chr17:26715557..26715559,+#_4859e9cc68bb844d16be3516852e2527p@chr17:26715557..26715559, +
1.23e-66FFCP PHASE2:Hg19::chr12:57638896..57638928,-#_4859e9cc68bb844d16be3516852e2527p@chr12:57638896..57638928, -
1.23e-66FFCP PHASE2:Hg19::chr19:51412411..51412426,-#_4859e9cc68bb844d16be3516852e2527p4@KLK4
1.23e-66FFCP PHASE1:Hg19::chr11:69518332..69518343,-#_4859e9cc68bb844d16be3516852e2527p@chr11:69518332..69518343, -
1.23e-66FFCP PHASE2:Hg19::chr7:1968190..1968198,-#_4859e9cc68bb844d16be3516852e2527p@chr7:1968190..1968198, -
1.23e-66FFCP PHASE2:Hg19::chr5:77683792..77683799,+#_4859e9cc68bb844d16be3516852e2527p@chr5:77683792..77683799, +
1.23e-66FFCP PHASE1:Hg19::chr17:26715557..26715559,+#_4859e9cc68bb844d16be3516852e2527p@chr17:26715557..26715559, +
1.23e-66FFCP PHASE1:Hg19::chr19:51412411..51412426,-#_4859e9cc68bb844d16be3516852e2527p4@KLK4
1.23e-66FFCP PHASE1:Hg19::chr7:1968190..1968198,-#_4859e9cc68bb844d16be3516852e2527p@chr7:1968190..1968198, -
1.23e-66FFCP PHASE1:Hg19::chr18:63418785..63418796,+#_4859e9cc68bb844d16be3516852e2527p@chr18:63418785..63418796, +
1.23e-66FFCP PHASE1:Hg19::chr12:57638896..57638928,-#_4859e9cc68bb844d16be3516852e2527p@chr12:57638896..57638928, -
1.23e-66FFCP PHASE1:Hg19::chr1:239571457..239571466,+#_4859e9cc68bb844d16be3516852e2527p18@CHRM3
1.23e-66FFCP PHASE2:Hg19::chr10:5407085..5407093,+#_4859e9cc68bb844d16be3516852e2527p5@UCN3
1.23e-66FFCP PHASE2:Hg19::chr11:69518108..69518118,-#_4859e9cc68bb844d16be3516852e2527p@chr11:69518108..69518118, -
1.23e-66FFCP PHASE1:Hg19::chr5:77683792..77683799,+#_4859e9cc68bb844d16be3516852e2527p@chr5:77683792..77683799, +
2.39e-66FFCP PHASE1:Hg19::chr6:18208425..18208436,+#_2f490eb73e496dcd6493351a092292b4p@chr6:18208425..18208436, +
2.39e-66FFCP PHASE2:Hg19::chr10:5060201..5060211,-#_2f490eb73e496dcd6493351a092292b4p5@AKR1C2
2.39e-66FFCP PHASE1:Hg19::chr7:15071427..15071430,-#_2f490eb73e496dcd6493351a092292b4p@chr7:15071427..15071430, -
2.39e-66FFCP PHASE2:Hg19::chr18:71843121..71843138,+#_2f490eb73e496dcd6493351a092292b4p@chr18:71843121..71843138, +
2.39e-66FFCP PHASE2:Hg19::chr4:116209677..116209718,+#_2f490eb73e496dcd6493351a092292b4p@chr4:116209677..116209718, +
2.39e-66FFCP PHASE2:Hg19::chr12:127385138..127385144,-#_2f490eb73e496dcd6493351a092292b4p@chr12:127385138..127385144, -
2.39e-66FFCP PHASE2:Hg19::chr18:71843159..71843180,+#_2f490eb73e496dcd6493351a092292b4p@chr18:71843159..71843180, +
2.39e-66FFCP PHASE1:Hg19::chr4:116209677..116209718,+#_2f490eb73e496dcd6493351a092292b4p@chr4:116209677..116209718, +
2.39e-66FFCP PHASE1:Hg19::chr18:71843121..71843138,+#_2f490eb73e496dcd6493351a092292b4p@chr18:71843121..71843138, +
2.39e-66FFCP PHASE1:Hg19::chr10:5060201..5060211,-#_2f490eb73e496dcd6493351a092292b4p5@AKR1C2
2.39e-66FFCP PHASE2:Hg19::chr1:223895346..223895353,-#_2f490eb73e496dcd6493351a092292b4p@chr1:223895346..223895353, -
2.39e-66FFCP PHASE2:Hg19::chr18:72611750..72611755,+#_2f490eb73e496dcd6493351a092292b4p@chr18:72611750..72611755, +
2.39e-66FFCP PHASE2:Hg19::chr6:18208425..18208436,+#_2f490eb73e496dcd6493351a092292b4p@chr6:18208425..18208436, +
2.39e-66FFCP PHASE2:Hg19::chr7:100810466..100810470,+#_2f490eb73e496dcd6493351a092292b4p@chr7:100810466..100810470, +
2.39e-66FFCP PHASE1:Hg19::chr12:127385138..127385144,-#_2f490eb73e496dcd6493351a092292b4p@chr12:127385138..127385144, -
2.39e-66FFCP PHASE2:Hg19::chr22:49769903..49769910,+#_2f490eb73e496dcd6493351a092292b4p@chr22:49769903..49769910, +
2.39e-66FFCP PHASE2:Hg19::chr4:3344434..3344441,+#_2f490eb73e496dcd6493351a092292b4p@chr4:3344434..3344441, +
2.39e-66FFCP PHASE1:Hg19::chr18:71843159..71843180,+#_2f490eb73e496dcd6493351a092292b4p@chr18:71843159..71843180, +
2.39e-66FFCP PHASE2:Hg19::chr7:1968200..1968208,-#_2f490eb73e496dcd6493351a092292b4p@chr7:1968200..1968208, -
2.39e-66FFCP PHASE1:Hg19::chr1:223895346..223895353,-#_2f490eb73e496dcd6493351a092292b4p@chr1:223895346..223895353, -
2.39e-66FFCP PHASE1:Hg19::chr7:100810466..100810470,+#_2f490eb73e496dcd6493351a092292b4p@chr7:100810466..100810470, +
2.39e-66FFCP PHASE1:Hg19::chr22:49769903..49769910,+#_2f490eb73e496dcd6493351a092292b4p@chr22:49769903..49769910, +
2.39e-66FFCP PHASE1:Hg19::chr4:3344434..3344441,+#_2f490eb73e496dcd6493351a092292b4p@chr4:3344434..3344441, +
2.39e-66FFCP PHASE2:Hg19::chr7:15071427..15071430,-#_2f490eb73e496dcd6493351a092292b4p@chr7:15071427..15071430, -
2.39e-66FFCP PHASE1:Hg19::chr7:1968200..1968208,-#_2f490eb73e496dcd6493351a092292b4p@chr7:1968200..1968208, -
2.39e-66FFCP PHASE1:Hg19::chr18:72611750..72611755,+#_2f490eb73e496dcd6493351a092292b4p@chr18:72611750..72611755, +
4.66e-66FFCP PHASE1:Hg19::chrX:118621021..118621027,-#_b103f3e8ef1301664003b9bcf82b06f8p@chrX:118621021..118621027, -
4.66e-66FFCP PHASE2:Hg19::chr2:108602414..108602423,+#_b103f3e8ef1301664003b9bcf82b06f8p@chr2:108602414..108602423, +
4.66e-66FFCP PHASE2:Hg19::chr13:79169067..79169071,-#_b103f3e8ef1301664003b9bcf82b06f8p@chr13:79169067..79169071, -
4.66e-66FFCP PHASE2:Hg19::chr4:3310694..3310716,-#_b103f3e8ef1301664003b9bcf82b06f8p@chr4:3310694..3310716, -
4.66e-66FFCP PHASE1:Hg19::chr9:33719660..33719671,-#_b103f3e8ef1301664003b9bcf82b06f8p@chr9:33719660..33719671, -
4.66e-66FFCP PHASE2:Hg19::chr2:108746272..108746286,+#_b103f3e8ef1301664003b9bcf82b06f8p@chr2:108746272..108746286, +
4.66e-66FFCP PHASE2:Hg19::chr22:49819110..49819121,-#_b103f3e8ef1301664003b9bcf82b06f8p5@C22orf34
4.66e-66FFCP PHASE1:Hg19::chr12:53686428..53686432,+#_b103f3e8ef1301664003b9bcf82b06f8p@chr12:53686428..53686432, +
4.66e-66FFCP PHASE2:Hg19::chr7:44574294..44574303,-#_b103f3e8ef1301664003b9bcf82b06f8p@chr7:44574294..44574303, -
4.66e-66FFCP PHASE1:Hg19::chr2:108602414..108602423,+#_b103f3e8ef1301664003b9bcf82b06f8p@chr2:108602414..108602423, +
4.66e-66FFCP PHASE1:Hg19::chr4:3310694..3310716,-#_b103f3e8ef1301664003b9bcf82b06f8p@chr4:3310694..3310716, -
4.66e-66FFCP PHASE1:Hg19::chr2:108746272..108746286,+#_b103f3e8ef1301664003b9bcf82b06f8p@chr2:108746272..108746286, +
4.66e-66FFCP PHASE1:Hg19::chr22:49819110..49819121,-#_b103f3e8ef1301664003b9bcf82b06f8p5@C22orf34
4.66e-66FFCP PHASE1:Hg19::chr7:44574294..44574303,-#_b103f3e8ef1301664003b9bcf82b06f8p@chr7:44574294..44574303, -
4.66e-66FFCP PHASE2:Hg19::chrX:118621021..118621027,-#_b103f3e8ef1301664003b9bcf82b06f8p@chrX:118621021..118621027, -
4.66e-66FFCP PHASE2:Hg19::chr9:33719660..33719671,-#_b103f3e8ef1301664003b9bcf82b06f8p@chr9:33719660..33719671, -

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