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{{CL
{{CL
|id=CL:0002551
|alt_id=
|name=fibroblast of dermis
|namespace=cell
|def=
|xref=
|is_a=CL:0002620
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=tmeehan
|created_by=tmeehan
|obo_creation_date=2011-02-28T05:05:33Z
|def=
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0002551
|is_a=CL:0002620
|is_obsolete=
|located_in=
|located_in=
|name=fibroblast of dermis
|namespace=FANTOM
|obo_creation_date=2011-02-28T05:05:33Z
|part_of=UBERON:0002067
|part_of=UBERON:0002067
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|subset=
|synonym=
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|xref=
}}
}}

Latest revision as of 16:44, 12 September 2014

Name:fibroblast of dermis
Namespace:FANTOM
Created by:tmeehan
Creation date:2011-02-28T05:05:33Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0002620(skin fibroblast)
part_of:UBERON:0002067(dermis)



Children


derives from:FF:0000062 (human dermal fibroblast sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002551 (fibroblast of dermis), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.47e-74FFCP PHASE2:Hg19::chr7:107707064..107707079,-#_90cd7a16675ef4bb6527dbc167a50537p@chr7:107707064..107707079, -
5.47e-74FFCP PHASE1:Hg19::chr7:107707064..107707079,-#_90cd7a16675ef4bb6527dbc167a50537p@chr7:107707064..107707079, -
5.47e-74FFCP PHASE2:Hg19::chr7:107707083..107707099,-#_90cd7a16675ef4bb6527dbc167a50537p@chr7:107707083..107707099, -
5.47e-74FFCP PHASE1:Hg19::chr7:107707083..107707099,-#_90cd7a16675ef4bb6527dbc167a50537p@chr7:107707083..107707099, -
3.67e-66FFCP PHASE2:Hg19::chr1:45087872..45087892,+#_7834d364ae744f22b5b193fe760972e3p@chr1:45087872..45087892, +
3.67e-66FFCP PHASE1:Hg19::chr1:45087872..45087892,+#_7834d364ae744f22b5b193fe760972e3p@chr1:45087872..45087892, +
4.12e-59FFCP PHASE2:Hg19::chr1:10228206..10228218,+#_f38e27bb221e91698f24d0aac4bc1865p@chr1:10228206..10228218, +
4.12e-59FFCP PHASE1:Hg19::chr1:10228206..10228218,+#_f38e27bb221e91698f24d0aac4bc1865p@chr1:10228206..10228218, +
8.06e-53FFCP PHASE2:Hg19::chr8:128387795..128387801,+#_ef9f565164d0e2713ad3bcdd27f9ec74p@chr8:128387795..128387801, +
8.06e-53FFCP PHASE1:Hg19::chr8:128387795..128387801,+#_ef9f565164d0e2713ad3bcdd27f9ec74p@chr8:128387795..128387801, +
8.88e-50FFCP PHASE2:Hg19::chr1:45088343..45088354,+#_1b14d61fdd4e0484ca07ee3b6984a033p@chr1:45088343..45088354, +
8.88e-50FFCP PHASE1:Hg19::chr1:45088343..45088354,+#_1b14d61fdd4e0484ca07ee3b6984a033p@chr1:45088343..45088354, +
5.62e-43FFCP PHASE2:Hg19::chr7:98258032..98258045,+#_db6c020ffedd2e86b5d67adb3446d4f3p@chr7:98258032..98258045, +
5.62e-43FFCP PHASE1:Hg19::chr7:98258032..98258045,+#_db6c020ffedd2e86b5d67adb3446d4f3p@chr7:98258032..98258045, +
5.46e-40FFCP PHASE2:Hg19::chr5:33794920..33794939,-#_010df5e8129935125cb9ca6e137bc217p@chr5:33794920..33794939, -
5.46e-40FFCP PHASE1:Hg19::chr5:33794920..33794939,-#_010df5e8129935125cb9ca6e137bc217p@chr5:33794920..33794939, -
4.29e-38FFCP PHASE2:Hg19::chr8:141656896..141656918,-#_9a556c23e5780a1f21f8406aba0e8a5bp@chr8:141656896..141656918, -
4.29e-38FFCP PHASE1:Hg19::chr8:141656896..141656918,-#_9a556c23e5780a1f21f8406aba0e8a5bp@chr8:141656896..141656918, -
7.14e-38FFCP PHASE2:Hg19::chr4:89454373..89454379,-#_1f7559558f9efd1e3fc451a1facf1701p@chr4:89454373..89454379, -
7.14e-38FFCP PHASE1:Hg19::chr4:89454373..89454379,-#_1f7559558f9efd1e3fc451a1facf1701p@chr4:89454373..89454379, -
3.46e-33FFCP PHASE2:Hg19::chr5:33794904..33794916,-#_fa6a0346d7d07da13b90f756e06abb0cp@chr5:33794904..33794916, -
3.46e-33FFCP PHASE1:Hg19::chr5:33794904..33794916,-#_fa6a0346d7d07da13b90f756e06abb0cp@chr5:33794904..33794916, -
8.45e-31FFCP PHASE2:Hg19::chr10:124254447..124254458,-#_de6ca84beeeb8f80e50223798f16231ep@chr10:124254447..124254458, -
8.45e-31FFCP PHASE1:Hg19::chr10:124254447..124254458,-#_de6ca84beeeb8f80e50223798f16231ep@chr10:124254447..124254458, -
1.52e-30FFCP PHASE2:Hg19::chr1:45087902..45087912,+#_86ad4fca479b64b3f7ba4930c1eaca0dp@chr1:45087902..45087912, +
1.52e-30FFCP PHASE1:Hg19::chr1:45087902..45087912,+#_86ad4fca479b64b3f7ba4930c1eaca0dp@chr1:45087902..45087912, +
3.85e-26FFCP PHASE2:Hg19::chr5:33794876..33794902,-#_4994a582f01f7c0db4ca1e608ac5a85dp@chr5:33794876..33794902, -
3.85e-26FFCP PHASE1:Hg19::chr5:33794876..33794902,-#_4994a582f01f7c0db4ca1e608ac5a85dp@chr5:33794876..33794902, -
2.14e-25FFCP PHASE2:Hg19::chr12:66036083..66036098,-#_d31f6a5fdb63cc4754c51dfeb6358f60p3@ENST00000539653
2.14e-25FFCP PHASE1:Hg19::chr12:66036083..66036098,-#_d31f6a5fdb63cc4754c51dfeb6358f60p3@ENST00000539653
2.27e-25FFCP PHASE2:Hg19::chr6:5498703..5498727,+#_3282b4c6304fba98dce7fa0db3c50928p@chr6:5498703..5498727, +
2.27e-25FFCP PHASE1:Hg19::chr6:5498703..5498727,+#_3282b4c6304fba98dce7fa0db3c50928p@chr6:5498703..5498727, +
2.75e-25FFCP PHASE1:Hg19::chrX:118362928..118362933,+#_0a9eb5aa61a8d600227f41bc49b43b9ep@chrX:118362928..118362933, +
2.75e-25FFCP PHASE2:Hg19::chrX:118362928..118362933,+#_0a9eb5aa61a8d600227f41bc49b43b9ep@chrX:118362928..118362933, +
6.03e-25FFCP PHASE2:Hg19::chr11:26210383..26210402,+#_ce66060ed2cc1f83bc9b744d74961919p2@ENST00000531798
6.03e-25FFCP PHASE1:Hg19::chr11:26210383..26210402,+#_ce66060ed2cc1f83bc9b744d74961919p2@ENST00000531798
2.36e-24FFCP PHASE2:Hg19::chrX:45364675..45364690,+#_8516bc62a59a28497117c904d80ce6aep2@ENST00000435394, p2@uc004dgj.1
2.36e-24FFCP PHASE1:Hg19::chrX:45364675..45364690,+#_8516bc62a59a28497117c904d80ce6aep2@ENST00000435394, p2@uc004dgj.1
1.81e-23FFCP PHASE2:Hg19::chr21:36208749..36208768,+#_48e77b452c62cb1b84357626a326ee8fp@chr21:36208749..36208768, +
1.81e-23FFCP PHASE1:Hg19::chr21:36208749..36208768,+#_48e77b452c62cb1b84357626a326ee8fp@chr21:36208749..36208768, +
1.97e-23FFCP PHASE2:Hg19::chr12:66036137..66036157,-#_8c96c8b36dd52e39fdaebf59d0768f7ap1@ENST00000539653, p2@ENST00000544557
1.97e-23FFCP PHASE1:Hg19::chr12:66036137..66036157,-#_8c96c8b36dd52e39fdaebf59d0768f7ap1@ENST00000539653, p2@ENST00000544557
1.97e-23FFCP PHASE2:Hg19::chr18:52969844..52969895,-#_8c96c8b36dd52e39fdaebf59d0768f7ap27@TCF4
1.97e-23FFCP PHASE1:Hg19::chr18:52969844..52969895,-#_8c96c8b36dd52e39fdaebf59d0768f7ap27@TCF4
3.27e-22FFCP PHASE2:Hg19::chr1:153744081..153744096,+#_ad2cdbead42d00f4a21856baedfedd6cp@chr1:153744081..153744096, +
3.27e-22FFCP PHASE1:Hg19::chr1:153744081..153744096,+#_ad2cdbead42d00f4a21856baedfedd6cp@chr1:153744081..153744096, +
7.72e-22FFCP PHASE2:Hg19::chr12:66036125..66036136,-#_ad1a5b37083853f716fb712d619ea243p2@ENST00000539653
7.72e-22FFCP PHASE1:Hg19::chr12:66036125..66036136,-#_ad1a5b37083853f716fb712d619ea243p2@ENST00000539653
8.48e-22FFCP PHASE2:Hg19::chr3:14212107..14212119,-#_896d285102a1290bd713ed7236799899p2@XPC
8.48e-22FFCP PHASE1:Hg19::chr3:14212107..14212119,-#_896d285102a1290bd713ed7236799899p2@XPC
2.38e-21FFCP PHASE2:Hg19::chr11:15145622..15145653,+#_ec618d2f42c367e9fe0c561e37b8d575p@chr11:15145622..15145653, +
2.38e-21FFCP PHASE1:Hg19::chr11:15145622..15145653,+#_ec618d2f42c367e9fe0c561e37b8d575p@chr11:15145622..15145653, +
6.26e-21FFCP PHASE2:Hg19::chr4:127699583..127699608,-#_5d5517834ad0c34c62435e9c34dd1558p@chr4:127699583..127699608, -
6.26e-21FFCP PHASE1:Hg19::chr4:127699583..127699608,-#_5d5517834ad0c34c62435e9c34dd1558p@chr4:127699583..127699608, -
2.63e-20FFCP PHASE2:Hg19::chr1:241577036..241577064,+#_2c898a6fc7a5021897bce59b5f83736ap@chr1:241577036..241577064, +
2.63e-20FFCP PHASE1:Hg19::chr1:241577036..241577064,+#_2c898a6fc7a5021897bce59b5f83736ap@chr1:241577036..241577064, +
3.78e-20FFCP PHASE2:Hg19::chr15:51520746..51520771,-#_2d7a82472497f429b8b469c3446ac062p@chr15:51520746..51520771, -
3.78e-20FFCP PHASE1:Hg19::chr15:51520746..51520771,-#_2d7a82472497f429b8b469c3446ac062p@chr15:51520746..51520771, -
2.26e-19FFCP PHASE2:Hg19::chr6:85474198..85474212,-#_0e62e6123f621b7c91aadf0056202c5fp3@TBX18
2.26e-19FFCP PHASE1:Hg19::chr6:85474198..85474212,-#_0e62e6123f621b7c91aadf0056202c5fp3@TBX18
9.05e-19FFCP PHASE2:Hg19::chr14:38371323..38371347,-#_c2478374fbc24af7cdc7ce2c40d97ab2p1@ENST00000554257, p1@uc001wuk.1
9.05e-19FFCP PHASE1:Hg19::chr14:38371323..38371347,-#_c2478374fbc24af7cdc7ce2c40d97ab2p1@ENST00000554257, p1@uc001wuk.1
1.31e-18FFCP PHASE2:Hg19::chr11:15136462..15136478,+#_6d651fa60b49652136b611494d33b620p1@INSC
1.31e-18FFCP PHASE1:Hg19::chr11:15136462..15136478,+#_6d651fa60b49652136b611494d33b620p1@INSC
8.22e-18FFCP PHASE2:Hg19::chr2:102091478..102091490,-#_98f16d76b19df566a915a3a0e8b09bccp3@RFX8
8.22e-18FFCP PHASE1:Hg19::chr2:102091478..102091490,-#_98f16d76b19df566a915a3a0e8b09bccp3@RFX8
9.07e-18FFCP PHASE2:Hg19::chr16:86797626..86797635,-#_cb475b5f98c5ba52c76a6aa49ae95002p@chr16:86797626..86797635, -
9.07e-18FFCP PHASE1:Hg19::chr16:86797626..86797635,-#_cb475b5f98c5ba52c76a6aa49ae95002p@chr16:86797626..86797635, -
1.44e-17FFCP PHASE2:Hg19::chr18:44840511..44840522,+#_06ad8ae9a4bd6fa51659059fd9cf2842p@chr18:44840511..44840522, +
1.44e-17FFCP PHASE1:Hg19::chr18:44840511..44840522,+#_06ad8ae9a4bd6fa51659059fd9cf2842p@chr18:44840511..44840522, +
2.19e-17FFCP PHASE2:Hg19::chr2:95983133..95983144,+#_355fd8e0b5bd1bf03540223f179b7954p@chr2:95983133..95983144, +
2.19e-17FFCP PHASE1:Hg19::chr2:95983133..95983144,+#_355fd8e0b5bd1bf03540223f179b7954p@chr2:95983133..95983144, +
2.31e-17FFCP PHASE1:Hg19::chr1:224862010..224862011,+#_141e84e906727e8025e4c7cf8ce00fb9p@chr1:224862010..224862011, +
2.31e-17FFCP PHASE2:Hg19::chr1:224862010..224862011,+#_141e84e906727e8025e4c7cf8ce00fb9p@chr1:224862010..224862011, +
9.08e-17FFCP PHASE2:Hg19::chr12:66036219..66036262,-#_92db965435c8fce051d65fe3fbd6773ap1@ENST00000544557
9.08e-17FFCP PHASE1:Hg19::chr12:66036219..66036262,-#_92db965435c8fce051d65fe3fbd6773ap1@ENST00000544557
1.2e-16FFCP PHASE2:Hg19::chr2:102091590..102091601,-#_2f041199151c964db94f2d4ebf651b7ap5@RFX8
1.2e-16FFCP PHASE1:Hg19::chr2:102091590..102091601,-#_2f041199151c964db94f2d4ebf651b7ap5@RFX8
1.62e-16FFCP PHASE2:Hg19::chr5:174252830..174252847,+#_0ff1266bba5e2f27cff90a387ad8e0b6p@chr5:174252830..174252847, +
1.62e-16FFCP PHASE1:Hg19::chr5:174252830..174252847,+#_0ff1266bba5e2f27cff90a387ad8e0b6p@chr5:174252830..174252847, +
1.9e-16FFCP PHASE2:Hg19::chr4:47857451..47857469,-#_9830def7f767a78ca7f08ccc7f5d616ap@chr4:47857451..47857469, -
1.9e-16FFCP PHASE1:Hg19::chr4:47857451..47857469,-#_9830def7f767a78ca7f08ccc7f5d616ap@chr4:47857451..47857469, -
3.84e-16FFCP PHASE2:Hg19::chr18:32347623..32347632,-#_492a522ecefa796ff73113e72a9792abp@chr18:32347623..32347632, -
3.84e-16FFCP PHASE1:Hg19::chr18:32347623..32347632,-#_492a522ecefa796ff73113e72a9792abp@chr18:32347623..32347632, -
6.4e-16FFCP PHASE2:Hg19::chr20:61340152..61340173,+#_1a21e25d8f9edfb5be8f05d018692115p2@NTSR1
6.4e-16FFCP PHASE1:Hg19::chr20:61340152..61340173,+#_1a21e25d8f9edfb5be8f05d018692115p2@NTSR1
1.54e-15FFCP PHASE2:Hg19::chr17:78808278..78808309,-#_21f23ce4c4910b46de2e50be06622f14p@chr17:78808278..78808309, -
1.54e-15FFCP PHASE1:Hg19::chr17:78808278..78808309,-#_21f23ce4c4910b46de2e50be06622f14p@chr17:78808278..78808309, -
2.13e-15FFCP PHASE2:Hg19::chr4:5754385..5754405,+#_b8184f69cf8a1189efd209bc6b500766p3@EVC
2.13e-15FFCP PHASE1:Hg19::chr4:5754385..5754405,+#_b8184f69cf8a1189efd209bc6b500766p3@EVC
4.32e-15FFCP PHASE2:Hg19::chr10:4806256..4806291,-#_b3d790414ed5ba9c6da1e43002bcc8f1p@chr10:4806256..4806291, -
4.32e-15FFCP PHASE1:Hg19::chr10:4806256..4806291,-#_b3d790414ed5ba9c6da1e43002bcc8f1p@chr10:4806256..4806291, -
6.55e-15FFCP PHASE1:Hg19::chr13:45289884..45289918,-#_9dfc37314421a674442dab304bdfa73ep@chr13:45289884..45289918, -
6.55e-15FFCP PHASE2:Hg19::chr13:45289884..45289918,-#_9dfc37314421a674442dab304bdfa73ep@chr13:45289884..45289918, -
7.14e-15FFCP PHASE2:Hg19::chr6:35465639..35465645,-#_0a512d51f99ed32baa74a304c598897ap@chr6:35465639..35465645, -
7.14e-15FFCP PHASE1:Hg19::chr6:35465639..35465645,-#_0a512d51f99ed32baa74a304c598897ap@chr6:35465639..35465645, -
9.07e-15FFCP PHASE2:Hg19::chr15:85873537..85873558,-#_d423f349734757a9b3f1ae475d9868a6p1@ENST00000558365
9.07e-15FFCP PHASE1:Hg19::chr15:85873537..85873558,-#_d423f349734757a9b3f1ae475d9868a6p1@ENST00000558365
1.51e-14FFCP PHASE2:Hg19::chr2:177022022..177022060,+#_cea257cccd928f7611782c086ff7cbddp@chr2:177022022..177022060, +
1.51e-14FFCP PHASE1:Hg19::chr2:177022022..177022060,+#_cea257cccd928f7611782c086ff7cbddp@chr2:177022022..177022060, +

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