CL:0002494: Difference between revisions
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{{CL | {{CL | ||
| | |alt_id= | ||
|comment=From Onard of the FMA: Cardiac muscle cell or cardiac myocyte is a striated muscle cell. Cardiocyte on the other hand is any cell in the heart which includes cells other than muscle cells (e.g. endothelial cell of endocardium). Unless there is a consensus among anatomists that cardiocytes refer only to muscle cells, we will treat them as a general class of cells in the heart. | |comment=From Onard of the FMA: Cardiac muscle cell or cardiac myocyte is a striated muscle cell. Cardiocyte on the other hand is any cell in the heart which includes cells other than muscle cells (e.g. endothelial cell of endocardium). Unless there is a consensus among anatomists that cardiocytes refer only to muscle cells, we will treat them as a general class of cells in the heart. | ||
|created_by=tmeehan | |created_by=tmeehan | ||
| | |def="A cell located in the heart, including both muscle and non muscle cells." [GOC:tfm] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=CL:0002494 | |||
|is_a=CL:0000548 ;;CL:0002371 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|part_of= | |name=cardiocyte | ||
|namespace=FANTOM | |||
|obo_creation_date=2010-12-07T09:37:22Z | |||
|part_of=UBERON:0007100 | |||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | ||
| | |subset= | ||
| | |synonym="heart cell" EXACT [] | ||
|union_of= | |||
|xref=BTO:0001539;;FMA:83808;;FMA:84791 | |||
}} | }} | ||
Latest revision as of 16:43, 12 September 2014
| Name: | cardiocyte | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A cell located in the heart, including both muscle and non muscle cells." [GOC:tfm] | ||
| Xrefs: |
| ||
| Synonyms: | "heart cell" EXACT [] | ||
| Comments: | From Onard of the FMA: Cardiac muscle cell or cardiac myocyte is a striated muscle cell. Cardiocyte on the other hand is any cell in the heart which includes cells other than muscle cells (e.g. endothelial cell of endocardium). Unless there is a consensus among anatomists that cardiocytes refer only to muscle cells, we will treat them as a general class of cells in the heart. | ||
| Created by: | tmeehan | ||
| Creation date: | 2010-12-07T09:37:22Z |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000548(animal cell),CL:0002371(somatic cell) |
|---|---|
| part_of: | UBERON:0007100(primary circulatory organ) |
Children
| is a: | CL:0000513 (cardiac muscle myoblast),CL:0000569 (cardiac mesenchymal cell),CL:0000746 (cardiac muscle cell),CL:0002548 (cardiac fibroblast),CL:0002592 (smooth muscle cell of the coronary artery) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11268-116G8 (Fibroblast - Cardiac, donor1)
- 11286-116I8 (Smooth Muscle Cells - Coronary Artery, donor1)
- 11345-117G4 (Fibroblast - Cardiac, donor2)
- 11363-117I4 (Smooth Muscle Cells - Coronary Artery, donor2)
- 11417-118F4 (Fibroblast - Cardiac, donor3)
- 11435-118H4 (Smooth Muscle Cells - Coronary Artery, donor3)
- 11452-119A3 (Fibroblast - Cardiac, donor4)
- 11456-119A7 (Fibroblast - Cardiac, donor5)
- 11460-119B2 (Fibroblast - Cardiac, donor6)
- 11525-119I4 (Cardiac Myocyte, donor1)
... further results Mouse (Mus musculus)
- 11268-116G8 (Fibroblast - Cardiac, donor1)
- 11286-116I8 (Smooth Muscle Cells - Coronary Artery, donor1)
- 11345-117G4 (Fibroblast - Cardiac, donor2)
- 11363-117I4 (Smooth Muscle Cells - Coronary Artery, donor2)
- 11417-118F4 (Fibroblast - Cardiac, donor3)
- 11435-118H4 (Smooth Muscle Cells - Coronary Artery, donor3)
- 11452-119A3 (Fibroblast - Cardiac, donor4)
- 11456-119A7 (Fibroblast - Cardiac, donor5)
- 11460-119B2 (Fibroblast - Cardiac, donor6)
- 11525-119I4 (Cardiac Myocyte, donor1)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002494 (cardiocyte), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.58e-86 | FFCP PHASE1:Mm9::chr9:56096674..56096680,+#_fc15e5ed66a0b93de2bfd8990e2d1542 | p@chr9:56096674..56096680, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr9:56096674..56096680,+#_fc15e5ed66a0b93de2bfd8990e2d1542 | p@chr9:56096674..56096680, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr7:106471695..106471701,+#_fc15e5ed66a0b93de2bfd8990e2d1542 | p@chr7:106471695..106471701, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr19:20567096..20567107,+#_fc15e5ed66a0b93de2bfd8990e2d1542 | p3@E030003E18Rik |
| 1.58e-86 | FFCP PHASE1:Mm9::chr9:102766842..102766853,+#_fc15e5ed66a0b93de2bfd8990e2d1542 | p@chr9:102766842..102766853, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr9:102766842..102766853,+#_fc15e5ed66a0b93de2bfd8990e2d1542 | p@chr9:102766842..102766853, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr7:106471695..106471701,+#_fc15e5ed66a0b93de2bfd8990e2d1542 | p@chr7:106471695..106471701, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr19:20567096..20567107,+#_fc15e5ed66a0b93de2bfd8990e2d1542 | p3@E030003E18Rik |
| 1.33e-65 | FFCP PHASE2:Mm9::chr6:91183204..91183213,+#_045442523cc2396832f43e86d89dd8e0 | p@chr6:91183204..91183213, + |
| 1.33e-65 | FFCP PHASE1:Mm9::chr6:91183204..91183213,+#_045442523cc2396832f43e86d89dd8e0 | p@chr6:91183204..91183213, + |
| 2.21e-65 | FFCP PHASE1:Mm9::chr19:20567153..20567160,+#_2715b49d4cbd8bd521a4beb039380ce3 | p7@E030003E18Rik |
| 2.21e-65 | FFCP PHASE2:Mm9::chr19:20567153..20567160,+#_2715b49d4cbd8bd521a4beb039380ce3 | p7@E030003E18Rik |
| 4.9e-53 | FFCP PHASE1:Mm9::chr7:117772048..117772059,+#_ab4b752acd4ac9d7ae69883d14091664 | p@chr7:117772048..117772059, + |
| 4.9e-53 | FFCP PHASE1:Mm9::chr8:11239175..11239178,-#_ab4b752acd4ac9d7ae69883d14091664 | p@chr8:11239175..11239178, - |
| 4.9e-53 | FFCP PHASE1:Mm9::chr6:91222464..91222477,+#_ab4b752acd4ac9d7ae69883d14091664 | p@chr6:91222464..91222477, + |
| 4.9e-53 | FFCP PHASE2:Mm9::chr19:20567067..20567078,+#_ab4b752acd4ac9d7ae69883d14091664 | p6@E030003E18Rik |
| 4.9e-53 | FFCP PHASE1:Mm9::chr3:103596528..103596539,-#_ab4b752acd4ac9d7ae69883d14091664 | p@chr3:103596528..103596539, - |
| 4.9e-53 | FFCP PHASE2:Mm9::chr8:11239175..11239178,-#_ab4b752acd4ac9d7ae69883d14091664 | p@chr8:11239175..11239178, - |
| 4.9e-53 | FFCP PHASE1:Mm9::chr11:43827555..43827566,+#_ab4b752acd4ac9d7ae69883d14091664 | p@chr11:43827555..43827566, + |
| 4.9e-53 | FFCP PHASE2:Mm9::chr3:103596528..103596539,-#_ab4b752acd4ac9d7ae69883d14091664 | p@chr3:103596528..103596539, - |
| 4.9e-53 | FFCP PHASE2:Mm9::chr7:117772048..117772059,+#_ab4b752acd4ac9d7ae69883d14091664 | p@chr7:117772048..117772059, + |
| 4.9e-53 | FFCP PHASE2:Mm9::chr6:91222464..91222477,+#_ab4b752acd4ac9d7ae69883d14091664 | p@chr6:91222464..91222477, + |
| 4.9e-53 | FFCP PHASE1:Mm9::chr19:20567067..20567078,+#_ab4b752acd4ac9d7ae69883d14091664 | p6@E030003E18Rik |
| 4.9e-53 | FFCP PHASE2:Mm9::chr11:43827555..43827566,+#_ab4b752acd4ac9d7ae69883d14091664 | p@chr11:43827555..43827566, + |
| 7.35e-53 | FFCP PHASE2:Mm9::chr5:30339923..30339935,+#_10952593b149d8ae0182eb9bfde15739 | p2@Il6 |
| 7.35e-53 | FFCP PHASE1:Mm9::chr5:30339923..30339935,+#_10952593b149d8ae0182eb9bfde15739 | p2@Il6 |
| 1.17e-52 | FFCP PHASE2:Hg19::chr7:81146338..81146341,-#_fa75392d22a67ec933afb4a923d6ae45 | p@chr7:81146338..81146341, - |
| 1.17e-52 | FFCP PHASE1:Hg19::chr7:81146338..81146341,-#_fa75392d22a67ec933afb4a923d6ae45 | p@chr7:81146338..81146341, - |
| 1.18e-44 | FFCP PHASE1:Mm9::chr8:11449034..11449045,+#_49fb28e6589b88aa20e061c95d2a0975 | p@chr8:11449034..11449045, + |
| 1.18e-44 | FFCP PHASE1:Mm9::chr19:20567168..20567179,+#_49fb28e6589b88aa20e061c95d2a0975 | p5@E030003E18Rik |
| 1.18e-44 | FFCP PHASE2:Mm9::chr8:11449034..11449045,+#_49fb28e6589b88aa20e061c95d2a0975 | p@chr8:11449034..11449045, + |
| 1.18e-44 | FFCP PHASE2:Mm9::chr19:20567168..20567179,+#_49fb28e6589b88aa20e061c95d2a0975 | p5@E030003E18Rik |
| 1.66e-44 | FFCP PHASE1:Mm9::chr11:61392754..61392766,-#_39b6200052580540b5d2d55ac3f70a3a | p@chr11:61392754..61392766, - |
| 1.66e-44 | FFCP PHASE2:Mm9::chr11:61392754..61392766,-#_39b6200052580540b5d2d55ac3f70a3a | p@chr11:61392754..61392766, - |
| 3.27e-44 | FFCP PHASE1:Mm9::chr3:103792260..103792309,+#_a45224ce47991acb431a08f0f2feabd9 | p@chr3:103792260..103792309, + |
| 3.27e-44 | FFCP PHASE2:Mm9::chr3:103792260..103792309,+#_a45224ce47991acb431a08f0f2feabd9 | p@chr3:103792260..103792309, + |
| 8.97e-44 | FFCP PHASE1:Mm9::chr5:93362343..93362363,+#_6b3c396e694cfff9f17008d7304b28a6 | p@chr5:93362343..93362363, + |
| 8.97e-44 | FFCP PHASE2:Mm9::chr5:93362343..93362363,+#_6b3c396e694cfff9f17008d7304b28a6 | p@chr5:93362343..93362363, + |
| 2.45e-43 | FFCP PHASE2:Mm9::chrX:160838683..160838694,+#_e1bddb496671702e55a53b5fb8fb66ba | p@chrX:160838683..160838694, + |
| 2.45e-43 | FFCP PHASE1:Mm9::chrX:160838683..160838694,+#_e1bddb496671702e55a53b5fb8fb66ba | p@chrX:160838683..160838694, + |
| 2.62e-42 | FFCP PHASE2:Hg19::chr17:77019002..77019027,+#_9a60058f517ffe12a1f58d227b3a383e | p@chr17:77019002..77019027, + |
| 2.62e-42 | FFCP PHASE1:Hg19::chr17:77019002..77019027,+#_9a60058f517ffe12a1f58d227b3a383e | p@chr17:77019002..77019027, + |
| 1.7e-39 | FFCP PHASE2:Mm9::chr8:125956526..125956533,-#_0795bb053bde50c6e9a8895d3a7a636f | p@chr8:125956526..125956533, - |
| 1.7e-39 | FFCP PHASE1:Mm9::chr8:125956526..125956533,-#_0795bb053bde50c6e9a8895d3a7a636f | p@chr8:125956526..125956533, - |
| 2.66e-39 | FFCP PHASE2:Mm9::chr8:125952865..125952872,-#_67a7e6d35cf1e912d8bddf3e98132ccc | p@chr8:125952865..125952872, - |
| 2.66e-39 | FFCP PHASE1:Mm9::chr8:125952865..125952872,-#_67a7e6d35cf1e912d8bddf3e98132ccc | p@chr8:125952865..125952872, - |
| 2.66e-39 | FFCP PHASE1:Mm9::chr15:76984103..76984104,-#_67a7e6d35cf1e912d8bddf3e98132ccc | p18@Rbfox2 |
| 2.66e-39 | FFCP PHASE2:Mm9::chr15:76984103..76984104,-#_67a7e6d35cf1e912d8bddf3e98132ccc | p18@Rbfox2 |
| 4.15e-39 | FFCP PHASE2:Mm9::chr7:117927007..117927010,+#_66f4bb4f9118f49871cc6fbc400ca60d | p@chr7:117927007..117927010, + |
| 4.15e-39 | FFCP PHASE1:Mm9::chr6:91202567..91202570,+#_66f4bb4f9118f49871cc6fbc400ca60d | p@chr6:91202567..91202570, + |
| 4.15e-39 | FFCP PHASE1:Mm9::chr7:117927007..117927010,+#_66f4bb4f9118f49871cc6fbc400ca60d | p@chr7:117927007..117927010, + |
| 4.15e-39 | FFCP PHASE2:Mm9::chr6:91202567..91202570,+#_66f4bb4f9118f49871cc6fbc400ca60d | p@chr6:91202567..91202570, + |
| 1.17e-38 | FFCP PHASE2:Mm9::chr6:91184012..91184021,+#_818f001efdbbe78ad11605ba314b2519 | p@chr6:91184012..91184021, + |
| 1.17e-38 | FFCP PHASE1:Mm9::chr6:91184012..91184021,+#_818f001efdbbe78ad11605ba314b2519 | p@chr6:91184012..91184021, + |
| 1.56e-38 | FFCP PHASE2:Mm9::chr16:58465599..58465600,+#_2aac025b83e1e32b13f1251ddfefdf3d | p@chr16:58465599..58465600, + |
| 1.56e-38 | FFCP PHASE1:Mm9::chr16:58465599..58465600,+#_2aac025b83e1e32b13f1251ddfefdf3d | p@chr16:58465599..58465600, + |
| 2.79e-38 | FFCP PHASE2:Mm9::chr4:141154145..141154160,-#_5912689644d4f9237ad2801527a5b6f4 | p6@Fblim1 |
| 2.79e-38 | FFCP PHASE1:Mm9::chr4:141154145..141154160,-#_5912689644d4f9237ad2801527a5b6f4 | p6@Fblim1 |
| 3.73e-38 | FFCP PHASE1:Mm9::chr3:54920096..54920117,+#_ee36f12f6eedd012ae6a8c3cdb9daa6a | p7@Spg20 |
| 3.73e-38 | FFCP PHASE2:Mm9::chr3:54920096..54920117,+#_ee36f12f6eedd012ae6a8c3cdb9daa6a | p7@Spg20 |
| 6.0e-38 | FFCP PHASE1:Hg19::chr17:10195132..10195137,+#_5e5eb212cecf5fd6e2c8a19df12c288a | p@chr17:10195132..10195137, + |
| 6.0e-38 | FFCP PHASE2:Hg19::chr17:10195132..10195137,+#_5e5eb212cecf5fd6e2c8a19df12c288a | p@chr17:10195132..10195137, + |
| 6.64e-38 | FFCP PHASE2:Mm9::chr12:105433069..105433075,-#_48c96e11312797c5996d9329f0e61cea | p@chr12:105433069..105433075, - |
| 6.64e-38 | FFCP PHASE1:Mm9::chr12:105433069..105433075,-#_48c96e11312797c5996d9329f0e61cea | p@chr12:105433069..105433075, - |
| 8.86e-38 | FFCP PHASE2:Mm9::chrX:65748600..65748616,+#_38f703434e0b2c4e141065256e049bf4 | p@chrX:65748600..65748616, + |
| 8.86e-38 | FFCP PHASE1:Mm9::chrX:65748600..65748616,+#_38f703434e0b2c4e141065256e049bf4 | p@chrX:65748600..65748616, + |
| 8.86e-38 | FFCP PHASE2:Mm9::chr18:61220910..61220912,+#_38f703434e0b2c4e141065256e049bf4 | p@chr18:61220910..61220912, + |
| 8.86e-38 | FFCP PHASE1:Mm9::chr18:61220910..61220912,+#_38f703434e0b2c4e141065256e049bf4 | p@chr18:61220910..61220912, + |
| 2.24e-37 | FFCP PHASE2:Hg19::chr17:77018953..77018966,+#_b9bde35e9c6ded55ffc3dc5c48ff0322 | p@chr17:77018953..77018966, + |
| 2.24e-37 | FFCP PHASE1:Hg19::chr17:77018953..77018966,+#_b9bde35e9c6ded55ffc3dc5c48ff0322 | p@chr17:77018953..77018966, + |
| 1.36e-34 | FFCP PHASE1:Hg19::chr14:61929948..61929975,+#_e87fefc6de0893384afcddfe7e0b7714 | p20@PRKCH |
| 1.36e-34 | FFCP PHASE2:Hg19::chr14:61929948..61929975,+#_e87fefc6de0893384afcddfe7e0b7714 | p20@PRKCH |
| 3.67e-34 | FFCP PHASE1:Mm9::chr6:91222095..91222107,+#_30258a656b3441e0f2e59623c037f2af | p@chr6:91222095..91222107, + |
| 3.67e-34 | FFCP PHASE2:Mm9::chr7:19425360..19425369,+#_30258a656b3441e0f2e59623c037f2af | p2@Mill2 |
| 3.67e-34 | FFCP PHASE1:Mm9::chr6:91183490..91183501,+#_30258a656b3441e0f2e59623c037f2af | p@chr6:91183490..91183501, + |
| 3.67e-34 | FFCP PHASE2:Mm9::chr6:91222095..91222107,+#_30258a656b3441e0f2e59623c037f2af | p@chr6:91222095..91222107, + |
| 3.67e-34 | FFCP PHASE2:Mm9::chr6:91183490..91183501,+#_30258a656b3441e0f2e59623c037f2af | p@chr6:91183490..91183501, + |
| 3.67e-34 | FFCP PHASE1:Mm9::chr7:19425360..19425369,+#_30258a656b3441e0f2e59623c037f2af | p2@Mill2 |
| 7.89e-34 | FFCP PHASE1:Mm9::chr5:137542830..137542841,-#_cb82a4638c7190c39596db257139d96a | p@chr5:137542830..137542841, - |
| 7.89e-34 | FFCP PHASE2:Mm9::chr5:137542830..137542841,-#_cb82a4638c7190c39596db257139d96a | p@chr5:137542830..137542841, - |
| 8.46e-34 | FFCP PHASE2:Hg19::chr2:169938317..169938331,+#_7888a182af89d7b3e678c5a575ea1786 | p3@DHRS9 |
| 8.46e-34 | FFCP PHASE1:Hg19::chr2:169938317..169938331,+#_7888a182af89d7b3e678c5a575ea1786 | p3@DHRS9 |
| 3.61e-33 | FFCP PHASE1:Mm9::chr5:77778263..77778301,+#_1bcd757f7450b0e0c6b9bed66263afbb | p@chr5:77778263..77778301, + |
| 3.61e-33 | FFCP PHASE1:Mm9::chr11:81849982..81850000,+#_1bcd757f7450b0e0c6b9bed66263afbb | p@chr11:81849982..81850000, + |
| 3.61e-33 | FFCP PHASE2:Mm9::chr11:81849982..81850000,+#_1bcd757f7450b0e0c6b9bed66263afbb | p@chr11:81849982..81850000, + |
| 3.61e-33 | FFCP PHASE2:Mm9::chr5:77778263..77778301,+#_1bcd757f7450b0e0c6b9bed66263afbb | p@chr5:77778263..77778301, + |
| 5.97e-33 | FFCP PHASE2:Mm9::chr16:37834682..37834693,+#_2491fdd83f0ae71665f7023b4a75eb7b | p@chr16:37834682..37834693, + |
| 5.97e-33 | FFCP PHASE1:Mm9::chr16:37834682..37834693,+#_2491fdd83f0ae71665f7023b4a75eb7b | p@chr16:37834682..37834693, + |
| 7.68e-33 | FFCP PHASE2:Mm9::chr13:5863732..5863743,+#_90bd6975db81df7e2e126ed0ed1a95b8 | p@chr13:5863732..5863743, + |
| 7.68e-33 | FFCP PHASE1:Mm9::chr3:88420206..88420215,+#_90bd6975db81df7e2e126ed0ed1a95b8 | p18@Arhgef2 |
| 7.68e-33 | FFCP PHASE1:Mm9::chr13:5863732..5863743,+#_90bd6975db81df7e2e126ed0ed1a95b8 | p@chr13:5863732..5863743, + |
| 7.68e-33 | FFCP PHASE2:Mm9::chr3:88420206..88420215,+#_90bd6975db81df7e2e126ed0ed1a95b8 | p18@Arhgef2 |
| 1.0e-30 | FFCP PHASE1:Hg19::chr17:77018898..77018919,+#_5e92c6490346bec20758bc2a5b0f98f7 | p@chr17:77018898..77018919, + |
| 1.0e-30 | FFCP PHASE2:Hg19::chr17:77018898..77018919,+#_5e92c6490346bec20758bc2a5b0f98f7 | p@chr17:77018898..77018919, + |
| 1.16e-30 | FFCP PHASE2:Mm9::chr3:103596496..103596513,-#_5c35b8e126e999c8c7f68ac27371fa14 | p@chr3:103596496..103596513, - |
| 1.16e-30 | FFCP PHASE1:Mm9::chr3:103596496..103596513,-#_5c35b8e126e999c8c7f68ac27371fa14 | p@chr3:103596496..103596513, - |
| 1.16e-30 | FFCP PHASE2:Mm9::chrX:130443013..130443020,+#_5c35b8e126e999c8c7f68ac27371fa14 | p6@Srpx2 |
| 1.16e-30 | FFCP PHASE1:Mm9::chrX:130443013..130443020,+#_5c35b8e126e999c8c7f68ac27371fa14 | p6@Srpx2 |
| 1.46e-30 | FFCP PHASE2:Mm9::chr6:91220024..91220048,+#_149ec9da5c9f9904b0055a411eefe372 | p@chr6:91220024..91220048, + |
| 1.46e-30 | FFCP PHASE1:Mm9::chr6:91220024..91220048,+#_149ec9da5c9f9904b0055a411eefe372 | p@chr6:91220024..91220048, + |
