CL:0002304: Difference between revisions
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{{CL | {{CL | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by=tmeehan | |created_by=tmeehan | ||
| | |def="A multi-ciliated cell of the retina that lacks visual pigment and contributes to aqueous humor by secreting chloride ions. This cell type maintains gap junctions with pigmented epithelial cells." [GOC:tfm, PMID:15106942] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=CL:0002304 | |||
|is_a=CL:0000067 ;;CL:0000710 ;;CL:0005012 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|part_of= | |name=non-pigmented ciliary epithelial cell | ||
|namespace=FANTOM | |||
|obo_creation_date=2010-09-13T04:09:31Z | |||
|part_of=UBERON:0001778 | |||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | ||
| | |subset= | ||
| | |synonym="NPE" EXACT [] | ||
|union_of= | |||
|xref=FMA:70607 | |||
}} | }} | ||
Latest revision as of 16:41, 12 September 2014
| Name: | non-pigmented ciliary epithelial cell | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A multi-ciliated cell of the retina that lacks visual pigment and contributes to aqueous humor by secreting chloride ions. This cell type maintains gap junctions with pigmented epithelial cells." [GOC:tfm, PMID:15106942] | ||
| Xrefs: |
| ||
| Synonyms: | "NPE" EXACT [] | ||
| Created by: | tmeehan | ||
| Creation date: | 2010-09-13T04:09:31Z |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000067(ciliated epithelial cell),CL:0000710(neurecto-epithelial cell),CL:0005012(multi-ciliated epithelial cell) |
|---|---|
| part_of: | UBERON:0001778(ciliary epithelium) |
Children
| derives from: | FF:0000040 (human ciliary epithelial cell sample) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11242-116D9 (Ciliary Epithelial Cells, donor1)
- 11323-117D9 (Ciliary Epithelial Cells, donor2)
- 11399-118D4 (Ciliary Epithelial Cells, donor3)
Mouse (Mus musculus)
- 11242-116D9 (Ciliary Epithelial Cells, donor1)
- 11323-117D9 (Ciliary Epithelial Cells, donor2)
- 11399-118D4 (Ciliary Epithelial Cells, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002304 (non-pigmented ciliary epithelial cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 8.93e-147 | FFCP PHASE1:Hg19::chr12:97856211..97856221,+#_8184d99d61026a7744e8061a0588073c | p@chr12:97856211..97856221, + |
| 8.93e-147 | FFCP PHASE2:Hg19::chr12:97856211..97856221,+#_8184d99d61026a7744e8061a0588073c | p@chr12:97856211..97856221, + |
| 7.78e-118 | FFCP PHASE1:Hg19::chr13:36052762..36052767,-#_cd80e70ecbbe585f4ea23f352b853c0b | p@chr13:36052762..36052767, - |
| 7.78e-118 | FFCP PHASE1:Hg19::chr8:41119800..41119811,-#_cd80e70ecbbe585f4ea23f352b853c0b | p5@SFRP1 |
| 7.78e-118 | FFCP PHASE2:Hg19::chr13:36052762..36052767,-#_cd80e70ecbbe585f4ea23f352b853c0b | p@chr13:36052762..36052767, - |
| 7.78e-118 | FFCP PHASE2:Hg19::chr8:41119800..41119811,-#_cd80e70ecbbe585f4ea23f352b853c0b | p5@SFRP1 |
| 2.59e-117 | FFCP PHASE2:Hg19::chrX:106198807..106198826,-#_50033488cd35d3cb90b108e102acc412 | p@chrX:106198807..106198826, - |
| 2.59e-117 | FFCP PHASE2:Hg19::chr16:58896129..58896134,-#_50033488cd35d3cb90b108e102acc412 | p@chr16:58896129..58896134, - |
| 2.59e-117 | FFCP PHASE1:Hg19::chr16:58896129..58896134,-#_50033488cd35d3cb90b108e102acc412 | p@chr16:58896129..58896134, - |
| 2.59e-117 | FFCP PHASE1:Hg19::chrX:106198807..106198826,-#_50033488cd35d3cb90b108e102acc412 | p@chrX:106198807..106198826, - |
| 4.06e-99 | FFCP PHASE1:Hg19::chr14:61654180..61654191,+#_243e349779dccee30d736c6ef0249f9f | p33@PRKCH |
| 4.06e-99 | FFCP PHASE2:Hg19::chr14:61654180..61654191,+#_243e349779dccee30d736c6ef0249f9f | p33@PRKCH |
| 1.55e-98 | FFCP PHASE1:Hg19::chrX:106146585..106146594,-#_97b215a885eb09efd15b51a8d5446d09 | p2@RIPPLY1 |
| 1.55e-98 | FFCP PHASE2:Hg19::chrX:106146585..106146594,-#_97b215a885eb09efd15b51a8d5446d09 | p2@RIPPLY1 |
| 6.24e-88 | FFCP PHASE2:Hg19::chr2:210798666..210798677,+#_8aa09d076864b1e0f981b6bf59a2548a | p@chr2:210798666..210798677, + |
| 6.24e-88 | FFCP PHASE1:Hg19::chr2:210798666..210798677,+#_8aa09d076864b1e0f981b6bf59a2548a | p@chr2:210798666..210798677, + |
| 1.52e-87 | FFCP PHASE1:Hg19::chr13:36052713..36052724,-#_9ad53be5b2696622b3f51f48035547e4 | p@chr13:36052713..36052724, - |
| 1.52e-87 | FFCP PHASE2:Hg19::chr13:36052713..36052724,-#_9ad53be5b2696622b3f51f48035547e4 | p@chr13:36052713..36052724, - |
| 4.06e-85 | FFCP PHASE2:Hg19::chr11:27240276..27240289,-#_248f96cd241f117204312c5f6e9cc9cc | p1@ENST00000526061 |
| 4.06e-85 | FFCP PHASE1:Hg19::chr11:27240276..27240289,-#_248f96cd241f117204312c5f6e9cc9cc | p1@ENST00000526061 |
| 9.61e-85 | FFCP PHASE2:Hg19::chr10:91294399..91294401,-#_a39204efccbc72380ff4dbefd6d23951 | p@chr10:91294399..91294401, - |
| 9.61e-85 | FFCP PHASE1:Hg19::chr10:91294399..91294401,-#_a39204efccbc72380ff4dbefd6d23951 | p@chr10:91294399..91294401, - |
| 1.28e-84 | FFCP PHASE2:Hg19::chr8:53853672..53853682,-#_1e7e0a04362c2d39d7ca9aa3971881f7 | p1@BC033145 |
| 1.28e-84 | FFCP PHASE1:Hg19::chr8:53853672..53853682,-#_1e7e0a04362c2d39d7ca9aa3971881f7 | p1@BC033145 |
| 4.72e-75 | FFCP PHASE1:Hg19::chr2:45166478..45166502,-#_d66881573e3fc68191a1ac9dfd654e10 | p3@ENST00000437916 |
| 4.72e-75 | FFCP PHASE2:Hg19::chr2:45166478..45166502,-#_d66881573e3fc68191a1ac9dfd654e10 | p3@ENST00000437916 |
| 1.66e-74 | FFCP PHASE2:Hg19::chr8:94713146..94713159,+#_cd54d011bcaa386bcc71995a52b655df | p8@FAM92A1 |
| 1.66e-74 | FFCP PHASE1:Hg19::chr8:94713146..94713159,+#_cd54d011bcaa386bcc71995a52b655df | p8@FAM92A1 |
| 2.75e-74 | FFCP PHASE1:Hg19::chr4:183006122..183006131,-#_850b72408e42196574b92069b042c30d | p3@ENST00000505537 |
| 2.75e-74 | FFCP PHASE2:Hg19::chr4:183006122..183006131,-#_850b72408e42196574b92069b042c30d | p3@ENST00000505537 |
| 7.85e-67 | FFCP PHASE1:Hg19::chr3:110846331..110846333,+#_12112cac98dc75bdc14babc104ea2dd5 | p@chr3:110846331..110846333, + |
| 7.85e-67 | FFCP PHASE2:Hg19::chr3:110846331..110846333,+#_12112cac98dc75bdc14babc104ea2dd5 | p@chr3:110846331..110846333, + |
| 9.82e-67 | FFCP PHASE1:Hg19::chr2:237677787..237677800,+#_fca034072a5e6b17e04cc57a37701603 | p@chr2:237677787..237677800, + |
| 9.82e-67 | FFCP PHASE2:Hg19::chr2:237677787..237677800,+#_fca034072a5e6b17e04cc57a37701603 | p@chr2:237677787..237677800, + |
| 1.54e-66 | FFCP PHASE1:Hg19::chr11:89224826..89224839,-#_5856f47e99a8a17e2d9ea13afcc3cad5 | p14@NOX4 |
| 1.54e-66 | FFCP PHASE2:Hg19::chr11:89224826..89224839,-#_5856f47e99a8a17e2d9ea13afcc3cad5 | p14@NOX4 |
| 1.71e-66 | FFCP PHASE1:Hg19::chr1:218579326..218579337,+#_471b078a1c44c4c0ba305081421e8044 | p@chr1:218579326..218579337, + |
| 1.71e-66 | FFCP PHASE2:Hg19::chr1:218579326..218579337,+#_471b078a1c44c4c0ba305081421e8044 | p@chr1:218579326..218579337, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr2:63196015..63196016,+#_a7f0f53dbac0130af80f95418970ddbd | p@chr2:63196015..63196016, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr19:30716539..30716546,+#_a7f0f53dbac0130af80f95418970ddbd | p@chr19:30716539..30716546, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr2:63196015..63196016,+#_a7f0f53dbac0130af80f95418970ddbd | p@chr2:63196015..63196016, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr19:30716539..30716546,+#_a7f0f53dbac0130af80f95418970ddbd | p@chr19:30716539..30716546, + |
| 2.4e-66 | FFCP PHASE1:Hg19::chr7:115723897..115723915,-#_46d8e49f2ba811425e829a8382912c6e | p@chr7:115723897..115723915, - |
| 2.4e-66 | FFCP PHASE2:Hg19::chr7:115723897..115723915,-#_46d8e49f2ba811425e829a8382912c6e | p@chr7:115723897..115723915, - |
| 2.41e-66 | FFCP PHASE2:Hg19::chr3:139258648..139258667,+#_2626135cfc3973404057d936967656aa | p1@ENST00000381790 |
| 2.41e-66 | FFCP PHASE1:Hg19::chr3:139258648..139258667,+#_2626135cfc3973404057d936967656aa | p1@ENST00000381790 |
| 3.35e-66 | FFCP PHASE1:Hg19::chr15:79501729..79501736,+#_28b8d26f5e6b1a9f3044eb351db414ff | p1@MIR184 |
| 3.35e-66 | FFCP PHASE2:Hg19::chr15:79501729..79501736,+#_28b8d26f5e6b1a9f3044eb351db414ff | p1@MIR184 |
| 4.68e-66 | FFCP PHASE1:Hg19::chr3:50191610..50191612,-#_c2adc09eb898ba704c976b2d0dc4639d | p@chr3:50191610..50191612, - |
| 4.68e-66 | FFCP PHASE2:Hg19::chr3:50191610..50191612,-#_c2adc09eb898ba704c976b2d0dc4639d | p@chr3:50191610..50191612, - |
| 6.53e-66 | FFCP PHASE2:Hg19::chrX:106142727..106142730,-#_8dd3c90200b5fc5886cfca8e03a258c1 | p@chrX:106142727..106142730, - |
| 6.53e-66 | FFCP PHASE2:Hg19::chr1:12416343..12416350,+#_8dd3c90200b5fc5886cfca8e03a258c1 | p@chr1:12416343..12416350, + |
| 6.53e-66 | FFCP PHASE1:Hg19::chrX:106142727..106142730,-#_8dd3c90200b5fc5886cfca8e03a258c1 | p@chrX:106142727..106142730, - |
| 6.53e-66 | FFCP PHASE1:Hg19::chr1:12416343..12416350,+#_8dd3c90200b5fc5886cfca8e03a258c1 | p@chr1:12416343..12416350, + |
| 2.43e-60 | FFCP PHASE2:Hg19::chr5:31235359..31235362,+#_8ead782320e4fc69206a8c5a62735710 | p@chr5:31235359..31235362, + |
| 2.43e-60 | FFCP PHASE1:Hg19::chr5:31235359..31235362,+#_8ead782320e4fc69206a8c5a62735710 | p@chr5:31235359..31235362, + |
| 8.17e-60 | FFCP PHASE1:Hg19::chr3:150690508..150690520,-#_f4fd2f13d649d2cf0dd6ec22a6ba5337 | p1@CLRN1 |
| 8.17e-60 | FFCP PHASE2:Hg19::chr3:150690508..150690520,-#_f4fd2f13d649d2cf0dd6ec22a6ba5337 | p1@CLRN1 |
| 2.73e-59 | FFCP PHASE1:Hg19::chr8:124692287..124692298,+#_8027d81a78da4865c3ac955a73b4f34c | p@chr8:124692287..124692298, + |
| 2.73e-59 | FFCP PHASE2:Hg19::chr8:124692287..124692298,+#_8027d81a78da4865c3ac955a73b4f34c | p@chr8:124692287..124692298, + |
| 2.4e-55 | FFCP PHASE1:Hg19::chr3:110888243..110888248,+#_2ea0909ef635cd847b35da47fc5b3018 | p@chr3:110888243..110888248, + |
| 2.4e-55 | FFCP PHASE2:Hg19::chr3:110888243..110888248,+#_2ea0909ef635cd847b35da47fc5b3018 | p@chr3:110888243..110888248, + |
| 2.4e-55 | FFCP PHASE1:Hg19::chr14:61654271..61654282,+#_2ea0909ef635cd847b35da47fc5b3018 | p30@PRKCH |
| 2.4e-55 | FFCP PHASE2:Hg19::chr14:61654271..61654282,+#_2ea0909ef635cd847b35da47fc5b3018 | p30@PRKCH |
| 7.24e-55 | FFCP PHASE1:Hg19::chr14:60975914..60975925,+#_9b3512d60cb401e4b95530e43f39d578 | p5@SIX6 |
| 7.24e-55 | FFCP PHASE2:Hg19::chr14:60975914..60975925,+#_9b3512d60cb401e4b95530e43f39d578 | p5@SIX6 |
| 1.25e-54 | FFCP PHASE1:Hg19::chr14:60981789..60981803,+#_9bb1b8697cd7266203da454f0ac64b28 | p1@ENST00000557618 |
| 1.25e-54 | FFCP PHASE2:Hg19::chr14:60981789..60981803,+#_9bb1b8697cd7266203da454f0ac64b28 | p1@ENST00000557618 |
| 3.76e-54 | FFCP PHASE1:Hg19::chr2:45168617..45168631,-#_0fa22a387ebb096e4b3d614d40300ad4 | p1@ENST00000456467 |
| 3.76e-54 | FFCP PHASE2:Hg19::chr2:45168617..45168631,-#_0fa22a387ebb096e4b3d614d40300ad4 | p1@ENST00000456467 |
| 1.68e-53 | FFCP PHASE1:Hg19::chr7:115723925..115723935,-#_358ce03060be933824d406fb2dd153af | p@chr7:115723925..115723935, - |
| 1.68e-53 | FFCP PHASE2:Hg19::chr7:115723925..115723935,-#_358ce03060be933824d406fb2dd153af | p@chr7:115723925..115723935, - |
| 2.87e-53 | FFCP PHASE1:Hg19::chr2:35680607..35680613,-#_5c1eeba354b1e4377fea2a214f5611da | p@chr2:35680607..35680613, - |
| 2.87e-53 | FFCP PHASE2:Hg19::chr4:169623845..169623853,+#_5c1eeba354b1e4377fea2a214f5611da | p@chr4:169623845..169623853, + |
| 2.87e-53 | FFCP PHASE2:Hg19::chr2:35680607..35680613,-#_5c1eeba354b1e4377fea2a214f5611da | p@chr2:35680607..35680613, - |
| 2.87e-53 | FFCP PHASE1:Hg19::chr11:31671561..31671580,+#_5c1eeba354b1e4377fea2a214f5611da | p@chr11:31671561..31671580, + |
| 2.87e-53 | FFCP PHASE2:Hg19::chr11:31671561..31671580,+#_5c1eeba354b1e4377fea2a214f5611da | p@chr11:31671561..31671580, + |
| 2.87e-53 | FFCP PHASE1:Hg19::chr4:169623845..169623853,+#_5c1eeba354b1e4377fea2a214f5611da | p@chr4:169623845..169623853, + |
| 6.39e-53 | FFCP PHASE1:Hg19::chr7:131803806..131803815,+#_1a21e1623f31f741843f3a1924010c29 | p@chr7:131803806..131803815, + |
| 6.39e-53 | FFCP PHASE2:Hg19::chr7:131803806..131803815,+#_1a21e1623f31f741843f3a1924010c29 | p@chr7:131803806..131803815, + |
| 1.14e-50 | FFCP PHASE1:Hg19::chr1:29586692..29586705,+#_b75d258c8a4f90f1561d9763d81edd9a | p7@PTPRU |
| 1.14e-50 | FFCP PHASE2:Hg19::chr1:29586692..29586705,+#_b75d258c8a4f90f1561d9763d81edd9a | p7@PTPRU |
| 1.89e-50 | FFCP PHASE2:Hg19::chr13:94028319..94028321,+#_9d91a5f64eeb99a7be870be6507df9ac | p@chr13:94028319..94028321, + |
| 1.89e-50 | FFCP PHASE1:Hg19::chr13:94028319..94028321,+#_9d91a5f64eeb99a7be870be6507df9ac | p@chr13:94028319..94028321, + |
| 4.05e-47 | FFCP PHASE2:Hg19::chr11:2973356..2973367,-#_886392a5d4cbd5bbff58b1557968872b | p11@NAP1L4 |
| 4.05e-47 | FFCP PHASE1:Hg19::chr10:103990396..103990405,+#_886392a5d4cbd5bbff58b1557968872b | p@chr10:103990396..103990405, + |
| 4.05e-47 | FFCP PHASE1:Hg19::chr2:66670833..66670853,+#_886392a5d4cbd5bbff58b1557968872b | p@chr2:66670833..66670853, + |
| 4.05e-47 | FFCP PHASE1:Hg19::chr11:2973356..2973367,-#_886392a5d4cbd5bbff58b1557968872b | p11@NAP1L4 |
| 4.05e-47 | FFCP PHASE2:Hg19::chr10:103990396..103990405,+#_886392a5d4cbd5bbff58b1557968872b | p@chr10:103990396..103990405, + |
| 4.05e-47 | FFCP PHASE2:Hg19::chr2:66670833..66670853,+#_886392a5d4cbd5bbff58b1557968872b | p@chr2:66670833..66670853, + |
| 8.84e-47 | FFCP PHASE1:Hg19::chrX:106146562..106146577,-#_c35b13b56332fe925ac9cea617d57907 | p1@RIPPLY1 |
| 8.84e-47 | FFCP PHASE2:Hg19::chrX:106146562..106146577,-#_c35b13b56332fe925ac9cea617d57907 | p1@RIPPLY1 |
| 8.84e-47 | FFCP PHASE1:Hg19::chr14:60975644..60975673,+#_c35b13b56332fe925ac9cea617d57907 | p3@SIX6 |
| 8.84e-47 | FFCP PHASE2:Hg19::chr14:60975644..60975673,+#_c35b13b56332fe925ac9cea617d57907 | p3@SIX6 |
| 1.21e-46 | FFCP PHASE1:Hg19::chr1:203463245..203463294,+#_9539ed97f622ada28278cdff8ee2cb5e | p1@OPTC |
| 1.21e-46 | FFCP PHASE2:Hg19::chr1:203463245..203463294,+#_9539ed97f622ada28278cdff8ee2cb5e | p1@OPTC |
| 1.21e-46 | FFCP PHASE1:Hg19::chr14:60975871..60975880,+#_9539ed97f622ada28278cdff8ee2cb5e | p4@SIX6 |
| 1.21e-46 | FFCP PHASE2:Hg19::chr14:60975871..60975880,+#_9539ed97f622ada28278cdff8ee2cb5e | p4@SIX6 |
| 4.17e-46 | FFCP PHASE1:Hg19::chr13:36050976..36050990,+#_afeb2fe8dd60bf09f87c2f530b357712 | p8@NBEA |
| 4.17e-46 | FFCP PHASE2:Hg19::chr13:36050976..36050990,+#_afeb2fe8dd60bf09f87c2f530b357712 | p8@NBEA |
