CL:0002078: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 13: | Line 13: | ||
|located_in= | |located_in= | ||
|name=meso-epithelial cell | |name=meso-epithelial cell | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date=2010-06-29T03:49:14Z | |obo_creation_date=2010-06-29T03:49:14Z | ||
|part_of= | |part_of= | ||
Latest revision as of 16:40, 12 September 2014
| Name: | meso-epithelial cell | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Epithelial cell derived from mesoderm or mesenchyme." [FMA:69076, GOC:tfm, http://63.198.234.228/OpenFMA/Meso-epithelial%20cell.html] | ||
| Xrefs: |
| ||
| Synonyms: | "epithelial mesenchymal cell" EXACT [] | ||
| Created by: | tmeehan | ||
| Creation date: | 2010-06-29T03:49:14Z |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000066(epithelial cell),CL:0002371(somatic cell) |
|---|---|
| develops_from: | CL:0000222(mesodermal cell) |
Children
| is a: | CL:0000115 (endothelial cell),CL:0000214 (synovial cell),CL:0002097 (cortical cell of adrenal gland),CL:0002174 (follicular cell of ovary),CL:0002306 (epithelial cell of proximal tubule) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10441-106E9 (synovial sarcoma cell line:HS-SY-II)
- 10493-107B7 (mesothelioma cell line:ACC-MESO-1)
- 10494-107B8 (mesothelioma cell line:ACC-MESO-4)
- 10624-108H3 (granulosa cell tumor cell line:KGN)
- 11207-116A1 (Endothelial Cells - Aortic, donor0)
- 11229-116C5 (CD14+ monocyte derived endothelial progenitor cells, donor1)
- 11236-116D3 (Endothelial Cells - Lymphatic, donor1)
- 11243-116E1 (Endothelial Cells - Umbilical vein, donor1)
- 11263-116G3 (Endothelial Cells - Aortic, donor1)
- 11264-116G4 (Endothelial Cells - Artery, donor1)
... further results Mouse (Mus musculus)
- 10441-106E9 (synovial sarcoma cell line:HS-SY-II)
- 10493-107B7 (mesothelioma cell line:ACC-MESO-1)
- 10494-107B8 (mesothelioma cell line:ACC-MESO-4)
- 10624-108H3 (granulosa cell tumor cell line:KGN)
- 11207-116A1 (Endothelial Cells - Aortic, donor0)
- 11229-116C5 (CD14+ monocyte derived endothelial progenitor cells, donor1)
- 11236-116D3 (Endothelial Cells - Lymphatic, donor1)
- 11243-116E1 (Endothelial Cells - Umbilical vein, donor1)
- 11263-116G3 (Endothelial Cells - Aortic, donor1)
- 11264-116G4 (Endothelial Cells - Artery, donor1)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002078 (meso-epithelial cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 3.61e-117 | FFCP PHASE1:Hg19::chr6:3753188..3753192,-#_b18ed2809f04249b04b64cf18144be92 | p@chr6:3753188..3753192, - |
| 3.61e-117 | FFCP PHASE2:Hg19::chr6:3753188..3753192,-#_b18ed2809f04249b04b64cf18144be92 | p@chr6:3753188..3753192, - |
| 1.28e-111 | FFCP PHASE1:Hg19::chr2:56216687..56216727,-#_865d75356dd3140b8e78d5dd71764359 | p1@MIR216A |
| 1.28e-111 | FFCP PHASE2:Hg19::chr2:56216687..56216727,-#_865d75356dd3140b8e78d5dd71764359 | p1@MIR216A |
| 9.18e-108 | FFCP PHASE1:Hg19::chr11:124761247..124761258,-#_31ec0435d4df9b43d30ac002548e2838 | p@chr11:124761247..124761258, - |
| 9.18e-108 | FFCP PHASE2:Hg19::chr11:124761247..124761258,-#_31ec0435d4df9b43d30ac002548e2838 | p@chr11:124761247..124761258, - |
| 1.26e-107 | FFCP PHASE1:Hg19::chr17:62084108..62084111,-#_0fa26827e4e3da91c6ddc99b9f749fbb | p5@ICAM2 |
| 1.26e-107 | FFCP PHASE2:Hg19::chr17:62084108..62084111,-#_0fa26827e4e3da91c6ddc99b9f749fbb | p5@ICAM2 |
| 5.39e-97 | FFCP PHASE1:Hg19::chr16:2220383..2220402,+#_e701ccfec059c50762b70cb2c52813b9 | p@chr16:2220383..2220402, + |
| 5.39e-97 | FFCP PHASE2:Hg19::chr16:2220383..2220402,+#_e701ccfec059c50762b70cb2c52813b9 | p@chr16:2220383..2220402, + |
| 2.31e-93 | FFCP PHASE2:Hg19::chrX:71299684..71299699,+#_0dcb5814a9f62c9eed66384ae880f10a | p@chrX:71299684..71299699, + |
| 2.31e-93 | FFCP PHASE1:Hg19::chrX:71299684..71299699,+#_0dcb5814a9f62c9eed66384ae880f10a | p@chrX:71299684..71299699, + |
| 2.59e-93 | FFCP PHASE1:Hg19::chr5:95920642..95920681,+#_1c67b1e5cfcaedbdc92bda504f8a3985 | p1@ENST00000513158 |
| 2.59e-93 | FFCP PHASE2:Hg19::chr5:95920642..95920681,+#_1c67b1e5cfcaedbdc92bda504f8a3985 | p1@ENST00000513158 |
| 1.06e-92 | FFCP PHASE1:Hg19::chr13:32835894..32835907,+#_3252057c82e8ee23d38ef7c6a67159c7 | p@chr13:32835894..32835907, + |
| 1.06e-92 | FFCP PHASE2:Hg19::chr13:32835894..32835907,+#_3252057c82e8ee23d38ef7c6a67159c7 | p@chr13:32835894..32835907, + |
| 4.79e-90 | FFCP PHASE1:Hg19::chr18:33047117..33047138,-#_8cffd539e7ec0046620d83e2b5947a6a | p@chr18:33047117..33047138, - |
| 4.79e-90 | FFCP PHASE2:Hg19::chr18:33047117..33047138,-#_8cffd539e7ec0046620d83e2b5947a6a | p@chr18:33047117..33047138, - |
| 6.7e-90 | FFCP PHASE1:Hg19::chr18:33046982..33046991,-#_530aaf60263bcfc81b5e0312f8753d4a | p@chr18:33046982..33046991, - |
| 6.7e-90 | FFCP PHASE2:Hg19::chr18:33046982..33046991,-#_530aaf60263bcfc81b5e0312f8753d4a | p@chr18:33046982..33046991, - |
| 7.52e-90 | FFCP PHASE1:Hg19::chr15:39423060..39423066,+#_d2bb636066285299bb17378b8e8f51d3 | p@chr15:39423060..39423066, + |
| 7.52e-90 | FFCP PHASE2:Hg19::chr15:39423060..39423066,+#_d2bb636066285299bb17378b8e8f51d3 | p@chr15:39423060..39423066, + |
| 8.67e-89 | FFCP PHASE2:Hg19::chrX:15518894..15518905,+#_17df8e21066d2c3bc2faf45ec08e6e38 | p2@BMX |
| 8.67e-89 | FFCP PHASE1:Hg19::chrX:15518894..15518905,+#_17df8e21066d2c3bc2faf45ec08e6e38 | p2@BMX |
| 8.68e-88 | FFCP PHASE2:Hg19::chr12:105863654..105863682,+#_c12819a03c65dbfd4b6d2b263a0fcf64 | p@chr12:105863654..105863682, + |
| 8.68e-88 | FFCP PHASE1:Hg19::chr12:105863654..105863682,+#_c12819a03c65dbfd4b6d2b263a0fcf64 | p@chr12:105863654..105863682, + |
| 1.94e-87 | FFCP PHASE1:Hg19::chr14:38725249..38725254,-#_15f3e6257442d9c35d9d2bb7a8cfb708 | p6@CLEC14A |
| 1.94e-87 | FFCP PHASE2:Hg19::chr14:38725249..38725254,-#_15f3e6257442d9c35d9d2bb7a8cfb708 | p6@CLEC14A |
| 8.81e-87 | FFCP PHASE1:Hg19::chr14:38725228..38725236,-#_d2c3c083703c5c16578c009242905552 | p5@CLEC14A |
| 8.81e-87 | FFCP PHASE2:Hg19::chr14:38725228..38725236,-#_d2c3c083703c5c16578c009242905552 | p5@CLEC14A |
| 2.0e-86 | FFCP PHASE1:Hg19::chr18:33047157..33047168,-#_1366f614473e3d9a32ea4b971262ef78 | p@chr18:33047157..33047168, - |
| 2.0e-86 | FFCP PHASE2:Hg19::chr18:33047157..33047168,-#_1366f614473e3d9a32ea4b971262ef78 | p@chr18:33047157..33047168, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr4:43407825..43407830,+#_ab2327fa167ab3045dff25e12b49065f | p@chr4:43407825..43407830, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr16:85801525..85801529,-#_ab2327fa167ab3045dff25e12b49065f | p6@Adamts1 |
| 3.07e-86 | FFCP PHASE2:Mm9::chr15:82193340..82193343,+#_ab2327fa167ab3045dff25e12b49065f | p@chr15:82193340..82193343, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr1:138241693..138241697,+#_ab2327fa167ab3045dff25e12b49065f | p@chr1:138241693..138241697, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr9:42915220..42915225,-#_ab2327fa167ab3045dff25e12b49065f | p@chr9:42915220..42915225, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr10:93895817..93895819,-#_ab2327fa167ab3045dff25e12b49065f | p@chr10:93895817..93895819, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr1:66883923..66883955,-#_ab2327fa167ab3045dff25e12b49065f | p@chr1:66883923..66883955, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr13:100000226..100000230,+#_ab2327fa167ab3045dff25e12b49065f | p@chr13:100000226..100000230, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr17:35106749..35106752,-#_ab2327fa167ab3045dff25e12b49065f | p@chr17:35106749..35106752, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr1:186559285..186559288,+#_ab2327fa167ab3045dff25e12b49065f | p@chr1:186559285..186559288, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr11:109223779..109223789,-#_ab2327fa167ab3045dff25e12b49065f | p@chr11:109223779..109223789, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr6:34549876..34549892,-#_ab2327fa167ab3045dff25e12b49065f | p@chr6:34549876..34549892, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr18:35881716..35881727,-#_ab2327fa167ab3045dff25e12b49065f | p@chr18:35881716..35881727, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr2:84756280..84756286,+#_ab2327fa167ab3045dff25e12b49065f | p@chr2:84756280..84756286, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr18:38831400..38831402,-#_ab2327fa167ab3045dff25e12b49065f | p@chr18:38831400..38831402, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr10:85587155..85587188,+#_ab2327fa167ab3045dff25e12b49065f | p@chr10:85587155..85587188, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr17:34798597..34798606,+#_ab2327fa167ab3045dff25e12b49065f | p@chr17:34798597..34798606, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr12:25364645..25364655,+#_ab2327fa167ab3045dff25e12b49065f | p@chr12:25364645..25364655, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr11:68437375..68437378,+#_ab2327fa167ab3045dff25e12b49065f | p@chr11:68437375..68437378, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr17:12388232..12388237,+#_ab2327fa167ab3045dff25e12b49065f | p@chr17:12388232..12388237, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr15:88669906..88669914,+#_ab2327fa167ab3045dff25e12b49065f | p@chr15:88669906..88669914, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr15:59435855..59435878,-#_ab2327fa167ab3045dff25e12b49065f | p@chr15:59435855..59435878, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr9:45920408..45920437,-#_ab2327fa167ab3045dff25e12b49065f | p@chr9:45920408..45920437, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr11:117829935..117829959,-#_ab2327fa167ab3045dff25e12b49065f | p@chr11:117829935..117829959, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr16:30944451..30944485,+#_ab2327fa167ab3045dff25e12b49065f | p@chr16:30944451..30944485, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr9:42915185..42915192,-#_ab2327fa167ab3045dff25e12b49065f | p@chr9:42915185..42915192, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr13:113542610..113542614,+#_ab2327fa167ab3045dff25e12b49065f | p@chr13:113542610..113542614, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr19:29573929..29573932,+#_ab2327fa167ab3045dff25e12b49065f | p@chr19:29573929..29573932, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr8:111108947..111108951,+#_ab2327fa167ab3045dff25e12b49065f | p@chr8:111108947..111108951, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr16:11009028..11009039,+#_ab2327fa167ab3045dff25e12b49065f | p4@Gm4262 |
| 3.07e-86 | FFCP PHASE2:Mm9::chr11:109223779..109223789,-#_ab2327fa167ab3045dff25e12b49065f | p@chr11:109223779..109223789, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr6:34549876..34549892,-#_ab2327fa167ab3045dff25e12b49065f | p@chr6:34549876..34549892, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr8:89310639..89310641,-#_ab2327fa167ab3045dff25e12b49065f | p@chr8:89310639..89310641, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr17:48822294..48822295,-#_ab2327fa167ab3045dff25e12b49065f | p@chr17:48822294..48822295, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr13:5840965..5840966,+#_ab2327fa167ab3045dff25e12b49065f | p@chr13:5840965..5840966, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr17:28107053..28107062,-#_ab2327fa167ab3045dff25e12b49065f | p@chr17:28107053..28107062, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr5:33088768..33088773,+#_ab2327fa167ab3045dff25e12b49065f | p@chr5:33088768..33088773, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr2:133323630..133323631,+#_ab2327fa167ab3045dff25e12b49065f | p@chr2:133323630..133323631, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr18:44793802..44793835,+#_ab2327fa167ab3045dff25e12b49065f | p@chr18:44793802..44793835, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr6:92938260..92938264,-#_ab2327fa167ab3045dff25e12b49065f | p@chr6:92938260..92938264, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr8:11183699..11183703,-#_ab2327fa167ab3045dff25e12b49065f | p@chr8:11183699..11183703, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr12:86691575..86691580,-#_ab2327fa167ab3045dff25e12b49065f | p@chr12:86691575..86691580, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr11:88890706..88890745,+#_ab2327fa167ab3045dff25e12b49065f | p@chr11:88890706..88890745, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr9:62199266..62199267,+#_ab2327fa167ab3045dff25e12b49065f | p@chr9:62199266..62199267, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr18:39513150..39513152,+#_ab2327fa167ab3045dff25e12b49065f | p@chr18:39513150..39513152, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr15:32178407..32178408,-#_ab2327fa167ab3045dff25e12b49065f | p@chr15:32178407..32178408, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr6:48398664..48398684,-#_ab2327fa167ab3045dff25e12b49065f | p@chr6:48398664..48398684, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr11:118287827..118287833,-#_ab2327fa167ab3045dff25e12b49065f | p@chr11:118287827..118287833, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr4:86335502..86335509,+#_ab2327fa167ab3045dff25e12b49065f | p@chr4:86335502..86335509, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr10:8471698..8471701,+#_ab2327fa167ab3045dff25e12b49065f | p@chr10:8471698..8471701, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr2:84756280..84756286,+#_ab2327fa167ab3045dff25e12b49065f | p@chr2:84756280..84756286, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr4:43407825..43407830,+#_ab2327fa167ab3045dff25e12b49065f | p@chr4:43407825..43407830, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr9:45920408..45920437,-#_ab2327fa167ab3045dff25e12b49065f | p@chr9:45920408..45920437, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr2:133323630..133323631,+#_ab2327fa167ab3045dff25e12b49065f | p@chr2:133323630..133323631, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr1:173044327..173044331,+#_ab2327fa167ab3045dff25e12b49065f | p@chr1:173044327..173044331, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr14:8928284..8928331,+#_ab2327fa167ab3045dff25e12b49065f | p@chr14:8928284..8928331, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr11:54785454..54785456,-#_ab2327fa167ab3045dff25e12b49065f | p@chr11:54785454..54785456, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr18:47491114..47491123,+#_ab2327fa167ab3045dff25e12b49065f | p@chr18:47491114..47491123, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr18:4336287..4336296,-#_ab2327fa167ab3045dff25e12b49065f | p8@Map3k8 |
| 3.07e-86 | FFCP PHASE2:Mm9::chr16:28911901..28911906,-#_ab2327fa167ab3045dff25e12b49065f | p@chr16:28911901..28911906, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr12:86691503..86691504,-#_ab2327fa167ab3045dff25e12b49065f | p@chr12:86691503..86691504, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr15:82207617..82207621,+#_ab2327fa167ab3045dff25e12b49065f | p@chr15:82207617..82207621, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr10:93942324..93942342,-#_ab2327fa167ab3045dff25e12b49065f | p@chr10:93942324..93942342, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr15:32178407..32178408,-#_ab2327fa167ab3045dff25e12b49065f | p@chr15:32178407..32178408, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr17:35096519..35096524,+#_ab2327fa167ab3045dff25e12b49065f | p@chr17:35096519..35096524, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr8:86713876..86713879,+#_ab2327fa167ab3045dff25e12b49065f | p@chr8:86713876..86713879, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr17:24807620..24807650,-#_ab2327fa167ab3045dff25e12b49065f | p@chr17:24807620..24807650, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr15:82193340..82193343,+#_ab2327fa167ab3045dff25e12b49065f | p@chr15:82193340..82193343, + |
