Personal tools

CL:0002078: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{CL
{{CL
|id=CL:0002078
|alt_id=
|name=meso-epithelial cell
|namespace=cell
|def="Epithelial cell derived from mesoderm or mesenchyme." [FMA:69076, GOC:tfm, http://63.198.234.228/OpenFMA/Meso-epithelial%20cell.html]
|xref=FMA:69076
|is_a=CL:0000066;;CL:0002371
|synonym="epithelial mesenchymal cell" EXACT []
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=tmeehan
|created_by=tmeehan
|obo_creation_date=2010-06-29T03:49:14Z
|def="Epithelial cell derived from mesoderm or mesenchyme." [FMA:69076, GOC:tfm, http://63.198.234.228/OpenFMA/Meso-epithelial%20cell.html]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=CL:0000222
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0002078
|is_a=CL:0000066 ;;CL:0002371
|is_obsolete=
|located_in=
|located_in=
|name=meso-epithelial cell
|namespace=FANTOM
|obo_creation_date=2010-06-29T03:49:14Z
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="epithelial mesenchymal cell" EXACT []
|union_of=
|xref=FMA:69076
}}
}}

Latest revision as of 16:40, 12 September 2014

Name:meso-epithelial cell
Namespace:FANTOM
Definition:"Epithelial cell derived from mesoderm or mesenchyme." [FMA:69076, GOC:tfm, http://63.198.234.228/OpenFMA/Meso-epithelial%20cell.html]
Xrefs:
links:
FMA:69076
Synonyms: "epithelial mesenchymal cell" EXACT []
Created by:tmeehan
Creation date:2010-06-29T03:49:14Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000066(epithelial cell),CL:0002371(somatic cell)
develops_from:CL:0000222(mesodermal cell)



Children


is a:CL:0000115 (endothelial cell),CL:0000214 (synovial cell),CL:0002097 (cortical cell of adrenal gland),CL:0002174 (follicular cell of ovary),CL:0002306 (epithelial cell of proximal tubule)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002078 (meso-epithelial cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.61e-117FFCP PHASE1:Hg19::chr6:3753188..3753192,-#_b18ed2809f04249b04b64cf18144be92p@chr6:3753188..3753192, -
3.61e-117FFCP PHASE2:Hg19::chr6:3753188..3753192,-#_b18ed2809f04249b04b64cf18144be92p@chr6:3753188..3753192, -
1.28e-111FFCP PHASE1:Hg19::chr2:56216687..56216727,-#_865d75356dd3140b8e78d5dd71764359p1@MIR216A
1.28e-111FFCP PHASE2:Hg19::chr2:56216687..56216727,-#_865d75356dd3140b8e78d5dd71764359p1@MIR216A
9.18e-108FFCP PHASE1:Hg19::chr11:124761247..124761258,-#_31ec0435d4df9b43d30ac002548e2838p@chr11:124761247..124761258, -
9.18e-108FFCP PHASE2:Hg19::chr11:124761247..124761258,-#_31ec0435d4df9b43d30ac002548e2838p@chr11:124761247..124761258, -
1.26e-107FFCP PHASE2:Hg19::chr17:62084108..62084111,-#_0fa26827e4e3da91c6ddc99b9f749fbbp5@ICAM2
1.26e-107FFCP PHASE1:Hg19::chr17:62084108..62084111,-#_0fa26827e4e3da91c6ddc99b9f749fbbp5@ICAM2
5.39e-97FFCP PHASE1:Hg19::chr16:2220383..2220402,+#_e701ccfec059c50762b70cb2c52813b9p@chr16:2220383..2220402, +
5.39e-97FFCP PHASE2:Hg19::chr16:2220383..2220402,+#_e701ccfec059c50762b70cb2c52813b9p@chr16:2220383..2220402, +
2.31e-93FFCP PHASE2:Hg19::chrX:71299684..71299699,+#_0dcb5814a9f62c9eed66384ae880f10ap@chrX:71299684..71299699, +
2.31e-93FFCP PHASE1:Hg19::chrX:71299684..71299699,+#_0dcb5814a9f62c9eed66384ae880f10ap@chrX:71299684..71299699, +
2.59e-93FFCP PHASE1:Hg19::chr5:95920642..95920681,+#_1c67b1e5cfcaedbdc92bda504f8a3985p1@ENST00000513158
2.59e-93FFCP PHASE2:Hg19::chr5:95920642..95920681,+#_1c67b1e5cfcaedbdc92bda504f8a3985p1@ENST00000513158
1.06e-92FFCP PHASE1:Hg19::chr13:32835894..32835907,+#_3252057c82e8ee23d38ef7c6a67159c7p@chr13:32835894..32835907, +
1.06e-92FFCP PHASE2:Hg19::chr13:32835894..32835907,+#_3252057c82e8ee23d38ef7c6a67159c7p@chr13:32835894..32835907, +
4.79e-90FFCP PHASE1:Hg19::chr18:33047117..33047138,-#_8cffd539e7ec0046620d83e2b5947a6ap@chr18:33047117..33047138, -
4.79e-90FFCP PHASE2:Hg19::chr18:33047117..33047138,-#_8cffd539e7ec0046620d83e2b5947a6ap@chr18:33047117..33047138, -
6.7e-90FFCP PHASE1:Hg19::chr18:33046982..33046991,-#_530aaf60263bcfc81b5e0312f8753d4ap@chr18:33046982..33046991, -
6.7e-90FFCP PHASE2:Hg19::chr18:33046982..33046991,-#_530aaf60263bcfc81b5e0312f8753d4ap@chr18:33046982..33046991, -
7.52e-90FFCP PHASE1:Hg19::chr15:39423060..39423066,+#_d2bb636066285299bb17378b8e8f51d3p@chr15:39423060..39423066, +
7.52e-90FFCP PHASE2:Hg19::chr15:39423060..39423066,+#_d2bb636066285299bb17378b8e8f51d3p@chr15:39423060..39423066, +
8.67e-89FFCP PHASE2:Hg19::chrX:15518894..15518905,+#_17df8e21066d2c3bc2faf45ec08e6e38p2@BMX
8.67e-89FFCP PHASE1:Hg19::chrX:15518894..15518905,+#_17df8e21066d2c3bc2faf45ec08e6e38p2@BMX
8.68e-88FFCP PHASE1:Hg19::chr12:105863654..105863682,+#_c12819a03c65dbfd4b6d2b263a0fcf64p@chr12:105863654..105863682, +
8.68e-88FFCP PHASE2:Hg19::chr12:105863654..105863682,+#_c12819a03c65dbfd4b6d2b263a0fcf64p@chr12:105863654..105863682, +
1.94e-87FFCP PHASE1:Hg19::chr14:38725249..38725254,-#_15f3e6257442d9c35d9d2bb7a8cfb708p6@CLEC14A
1.94e-87FFCP PHASE2:Hg19::chr14:38725249..38725254,-#_15f3e6257442d9c35d9d2bb7a8cfb708p6@CLEC14A
8.81e-87FFCP PHASE1:Hg19::chr14:38725228..38725236,-#_d2c3c083703c5c16578c009242905552p5@CLEC14A
8.81e-87FFCP PHASE2:Hg19::chr14:38725228..38725236,-#_d2c3c083703c5c16578c009242905552p5@CLEC14A
2.0e-86FFCP PHASE1:Hg19::chr18:33047157..33047168,-#_1366f614473e3d9a32ea4b971262ef78p@chr18:33047157..33047168, -
2.0e-86FFCP PHASE2:Hg19::chr18:33047157..33047168,-#_1366f614473e3d9a32ea4b971262ef78p@chr18:33047157..33047168, -
3.07e-86FFCP PHASE1:Mm9::chr9:42915185..42915192,-#_ab2327fa167ab3045dff25e12b49065fp@chr9:42915185..42915192, -
3.07e-86FFCP PHASE1:Mm9::chr13:113542610..113542614,+#_ab2327fa167ab3045dff25e12b49065fp@chr13:113542610..113542614, +
3.07e-86FFCP PHASE1:Mm9::chr19:29573929..29573932,+#_ab2327fa167ab3045dff25e12b49065fp@chr19:29573929..29573932, +
3.07e-86FFCP PHASE2:Mm9::chr15:88669906..88669914,+#_ab2327fa167ab3045dff25e12b49065fp@chr15:88669906..88669914, +
3.07e-86FFCP PHASE2:Mm9::chr15:59435855..59435878,-#_ab2327fa167ab3045dff25e12b49065fp@chr15:59435855..59435878, -
3.07e-86FFCP PHASE2:Mm9::chr9:45920408..45920437,-#_ab2327fa167ab3045dff25e12b49065fp@chr9:45920408..45920437, -
3.07e-86FFCP PHASE1:Mm9::chr11:117829935..117829959,-#_ab2327fa167ab3045dff25e12b49065fp@chr11:117829935..117829959, -
3.07e-86FFCP PHASE2:Mm9::chr16:30944451..30944485,+#_ab2327fa167ab3045dff25e12b49065fp@chr16:30944451..30944485, +
3.07e-86FFCP PHASE1:Mm9::chr8:89310639..89310641,-#_ab2327fa167ab3045dff25e12b49065fp@chr8:89310639..89310641, -
3.07e-86FFCP PHASE1:Mm9::chr8:111108947..111108951,+#_ab2327fa167ab3045dff25e12b49065fp@chr8:111108947..111108951, +
3.07e-86FFCP PHASE2:Mm9::chr16:11009028..11009039,+#_ab2327fa167ab3045dff25e12b49065fp4@Gm4262
3.07e-86FFCP PHASE2:Mm9::chr11:109223779..109223789,-#_ab2327fa167ab3045dff25e12b49065fp@chr11:109223779..109223789, -
3.07e-86FFCP PHASE2:Mm9::chr6:34549876..34549892,-#_ab2327fa167ab3045dff25e12b49065fp@chr6:34549876..34549892, -
3.07e-86FFCP PHASE1:Mm9::chr6:92938260..92938264,-#_ab2327fa167ab3045dff25e12b49065fp@chr6:92938260..92938264, -
3.07e-86FFCP PHASE2:Mm9::chr8:11183699..11183703,-#_ab2327fa167ab3045dff25e12b49065fp@chr8:11183699..11183703, -
3.07e-86FFCP PHASE2:Mm9::chr12:86691575..86691580,-#_ab2327fa167ab3045dff25e12b49065fp@chr12:86691575..86691580, -
3.07e-86FFCP PHASE2:Mm9::chr11:88890706..88890745,+#_ab2327fa167ab3045dff25e12b49065fp@chr11:88890706..88890745, +
3.07e-86FFCP PHASE1:Mm9::chr9:62199266..62199267,+#_ab2327fa167ab3045dff25e12b49065fp@chr9:62199266..62199267, +
3.07e-86FFCP PHASE2:Mm9::chr18:39513150..39513152,+#_ab2327fa167ab3045dff25e12b49065fp@chr18:39513150..39513152, +
3.07e-86FFCP PHASE2:Mm9::chr15:32178407..32178408,-#_ab2327fa167ab3045dff25e12b49065fp@chr15:32178407..32178408, -
3.07e-86FFCP PHASE2:Mm9::chr17:48822294..48822295,-#_ab2327fa167ab3045dff25e12b49065fp@chr17:48822294..48822295, -
3.07e-86FFCP PHASE1:Mm9::chr13:5840965..5840966,+#_ab2327fa167ab3045dff25e12b49065fp@chr13:5840965..5840966, +
3.07e-86FFCP PHASE2:Mm9::chr17:28107053..28107062,-#_ab2327fa167ab3045dff25e12b49065fp@chr17:28107053..28107062, -
3.07e-86FFCP PHASE1:Mm9::chr5:33088768..33088773,+#_ab2327fa167ab3045dff25e12b49065fp@chr5:33088768..33088773, +
3.07e-86FFCP PHASE2:Mm9::chr2:133323630..133323631,+#_ab2327fa167ab3045dff25e12b49065fp@chr2:133323630..133323631, +
3.07e-86FFCP PHASE1:Mm9::chr18:44793802..44793835,+#_ab2327fa167ab3045dff25e12b49065fp@chr18:44793802..44793835, +
3.07e-86FFCP PHASE1:Mm9::chr9:45920408..45920437,-#_ab2327fa167ab3045dff25e12b49065fp@chr9:45920408..45920437, -
3.07e-86FFCP PHASE1:Mm9::chr2:133323630..133323631,+#_ab2327fa167ab3045dff25e12b49065fp@chr2:133323630..133323631, +
3.07e-86FFCP PHASE1:Mm9::chr1:173044327..173044331,+#_ab2327fa167ab3045dff25e12b49065fp@chr1:173044327..173044331, +
3.07e-86FFCP PHASE1:Mm9::chr14:8928284..8928331,+#_ab2327fa167ab3045dff25e12b49065fp@chr14:8928284..8928331, +
3.07e-86FFCP PHASE2:Mm9::chr11:54785454..54785456,-#_ab2327fa167ab3045dff25e12b49065fp@chr11:54785454..54785456, -
3.07e-86FFCP PHASE2:Mm9::chr6:48398664..48398684,-#_ab2327fa167ab3045dff25e12b49065fp@chr6:48398664..48398684, -
3.07e-86FFCP PHASE1:Mm9::chr11:118287827..118287833,-#_ab2327fa167ab3045dff25e12b49065fp@chr11:118287827..118287833, -
3.07e-86FFCP PHASE1:Mm9::chr4:86335502..86335509,+#_ab2327fa167ab3045dff25e12b49065fp@chr4:86335502..86335509, +
3.07e-86FFCP PHASE1:Mm9::chr10:8471698..8471701,+#_ab2327fa167ab3045dff25e12b49065fp@chr10:8471698..8471701, +
3.07e-86FFCP PHASE1:Mm9::chr2:84756280..84756286,+#_ab2327fa167ab3045dff25e12b49065fp@chr2:84756280..84756286, +
3.07e-86FFCP PHASE2:Mm9::chr4:43407825..43407830,+#_ab2327fa167ab3045dff25e12b49065fp@chr4:43407825..43407830, +
3.07e-86FFCP PHASE2:Mm9::chr18:4336287..4336296,-#_ab2327fa167ab3045dff25e12b49065fp8@Map3k8
3.07e-86FFCP PHASE2:Mm9::chr18:47491114..47491123,+#_ab2327fa167ab3045dff25e12b49065fp@chr18:47491114..47491123, +
3.07e-86FFCP PHASE1:Mm9::chr15:32178407..32178408,-#_ab2327fa167ab3045dff25e12b49065fp@chr15:32178407..32178408, -
3.07e-86FFCP PHASE2:Mm9::chr17:35096519..35096524,+#_ab2327fa167ab3045dff25e12b49065fp@chr17:35096519..35096524, +
3.07e-86FFCP PHASE2:Mm9::chr8:86713876..86713879,+#_ab2327fa167ab3045dff25e12b49065fp@chr8:86713876..86713879, +
3.07e-86FFCP PHASE2:Mm9::chr16:28911901..28911906,-#_ab2327fa167ab3045dff25e12b49065fp@chr16:28911901..28911906, -
3.07e-86FFCP PHASE1:Mm9::chr12:86691503..86691504,-#_ab2327fa167ab3045dff25e12b49065fp@chr12:86691503..86691504, -
3.07e-86FFCP PHASE2:Mm9::chr15:82207617..82207621,+#_ab2327fa167ab3045dff25e12b49065fp@chr15:82207617..82207621, +
3.07e-86FFCP PHASE1:Mm9::chr10:93942324..93942342,-#_ab2327fa167ab3045dff25e12b49065fp@chr10:93942324..93942342, -
3.07e-86FFCP PHASE2:Mm9::chr5:114422970..114422985,-#_ab2327fa167ab3045dff25e12b49065fp@chr5:114422970..114422985, -
3.07e-86FFCP PHASE2:Mm9::chr8:111108947..111108951,+#_ab2327fa167ab3045dff25e12b49065fp@chr8:111108947..111108951, +
3.07e-86FFCP PHASE1:Mm9::chr2:11935531..11935538,-#_ab2327fa167ab3045dff25e12b49065fp@chr2:11935531..11935538, -
3.07e-86FFCP PHASE1:Mm9::chr17:35093377..35093381,+#_ab2327fa167ab3045dff25e12b49065fp@chr17:35093377..35093381, +
3.07e-86FFCP PHASE2:Mm9::chr13:113554186..113554192,+#_ab2327fa167ab3045dff25e12b49065fp@chr13:113554186..113554192, +
3.07e-86FFCP PHASE1:Mm9::chr17:24807620..24807650,-#_ab2327fa167ab3045dff25e12b49065fp@chr17:24807620..24807650, -
3.07e-86FFCP PHASE1:Mm9::chr15:82193340..82193343,+#_ab2327fa167ab3045dff25e12b49065fp@chr15:82193340..82193343, +
3.07e-86FFCP PHASE1:Mm9::chr18:39297570..39297573,-#_ab2327fa167ab3045dff25e12b49065fp@chr18:39297570..39297573, -
3.07e-86FFCP PHASE1:Mm9::chr14:15179132..15179141,+#_ab2327fa167ab3045dff25e12b49065fp8@Il3ra
3.07e-86FFCP PHASE1:Mm9::chr9:42915220..42915225,-#_ab2327fa167ab3045dff25e12b49065fp@chr9:42915220..42915225, -
3.07e-86FFCP PHASE2:Mm9::chr17:34796428..34796430,-#_ab2327fa167ab3045dff25e12b49065fp@chr17:34796428..34796430, -
3.07e-86FFCP PHASE1:Mm9::chr13:113543694..113543702,-#_ab2327fa167ab3045dff25e12b49065fp@chr13:113543694..113543702, -
3.07e-86FFCP PHASE2:Mm9::chr5:64344878..64344887,-#_ab2327fa167ab3045dff25e12b49065fp@chr5:64344878..64344887, -
3.07e-86FFCP PHASE2:Mm9::chr11:107196799..107196814,+#_ab2327fa167ab3045dff25e12b49065fp@chr11:107196799..107196814, +
3.07e-86FFCP PHASE1:Mm9::chr18:35881716..35881727,-#_ab2327fa167ab3045dff25e12b49065fp@chr18:35881716..35881727, -
3.07e-86FFCP PHASE1:Mm9::chr13:96429295..96429302,-#_ab2327fa167ab3045dff25e12b49065fp@chr13:96429295..96429302, -
3.07e-86FFCP PHASE2:Mm9::chr12:100752983..100752984,+#_ab2327fa167ab3045dff25e12b49065fp@chr12:100752983..100752984, +
3.07e-86FFCP PHASE1:Mm9::chr10:117419958..117419964,+#_ab2327fa167ab3045dff25e12b49065fp@chr10:117419958..117419964, +
3.07e-86FFCP PHASE2:Mm9::chr6:51831254..51831256,-#_ab2327fa167ab3045dff25e12b49065fp@chr6:51831254..51831256, -
3.07e-86FFCP PHASE1:Mm9::chr12:74684893..74684910,-#_ab2327fa167ab3045dff25e12b49065fp@chr12:74684893..74684910, -
3.07e-86FFCP PHASE2:Mm9::chr3:104857794..104857802,-#_ab2327fa167ab3045dff25e12b49065fp@chr3:104857794..104857802, -
3.07e-86FFCP PHASE1:Mm9::chr8:11183699..11183703,-#_ab2327fa167ab3045dff25e12b49065fp@chr8:11183699..11183703, -

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=CL:0002078&oldid=3275409"