CL:0000945: Difference between revisions
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|located_in= | |located_in= | ||
|name=lymphocyte of B lineage | |name=lymphocyte of B lineage | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of= | ||
Latest revision as of 16:39, 12 September 2014
| Name: | lymphocyte of B lineage |
|---|---|
| Namespace: | FANTOM |
| Definition: | "A lymphocyte of B lineage is a lymphocyte that expresses CD19 on the cell surface. An additional defining characteristic is the commitment to express an immunoglobulin complex." [GO_REF:0000031, GOC:add, GOC:rhs, GOC:tfm, ISBN:0781735149] |
| Comments: | Types of B lineage lymphocytes include B cells and antibody secreting cells (plasmablasts and plasma cells). |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000542(lymphocyte) |
|---|---|
| develops_from: | CL:0000826(pro-B cell) |
Children
| is a: | CL:0000236 (B cell),CL:0000946 (antibody secreting cell),[[]] () |
|---|---|
| disjoint from: | CL:0000084 (T cell) |
| derives from: | FF:0100899 (myeloma cell line sample),FF:0101518 (B-lymphoma cell line sample),FF:0101522 (B-lymphocyte cell line sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10422-106C8 (Burkitt's lymphoma cell line:DAUDI)
- 10427-106D4 (b cell line:RPMI1788)
- 10474-106I6 (myeloma cell line:PCM6)
- 10476-106I8 (Burkitt's lymphoma cell line:RAJI)
- 10478-107A1
- 10534-107G3 (acute lymphoblastic leukemia (B-ALL) cell line:NALM-6)
- 10563-108A5 (xeroderma pigentosum b cell line:XPL 17)
- 10564-108A6
- 10566-108A8
- 10574-108B7
... further results Mouse (Mus musculus)
- 10422-106C8 (Burkitt's lymphoma cell line:DAUDI)
- 10427-106D4 (b cell line:RPMI1788)
- 10474-106I6 (myeloma cell line:PCM6)
- 10476-106I8 (Burkitt's lymphoma cell line:RAJI)
- 10478-107A1
- 10534-107G3 (acute lymphoblastic leukemia (B-ALL) cell line:NALM-6)
- 10563-108A5 (xeroderma pigentosum b cell line:XPL 17)
- 10564-108A6
- 10566-108A8
- 10574-108B7
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000945 (lymphocyte of B lineage), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 6.92e-147 | FFCP PHASE2:Hg19::chr11:111224819..111224845,+#_deff987030da2a556e280328f19f879e | p2@CU689419 |
| 6.92e-147 | FFCP PHASE1:Hg19::chr11:111224819..111224845,+#_deff987030da2a556e280328f19f879e | p2@CU689419 |
| 6.67e-144 | FFCP PHASE1:Hg19::chr5:132439186..132439209,+#_7759df4a8640cc2c0b50670e5795af7f | p13@HSPA4 |
| 6.67e-144 | FFCP PHASE2:Hg19::chr5:132439186..132439209,+#_7759df4a8640cc2c0b50670e5795af7f | p13@HSPA4 |
| 3.04e-141 | FFCP PHASE2:Hg19::chr3:121797478..121797512,-#_8815fe3cc193e893d921de38d99ad926 | p@chr3:121797478..121797512, - |
| 3.04e-141 | FFCP PHASE1:Hg19::chr3:121797478..121797512,-#_8815fe3cc193e893d921de38d99ad926 | p@chr3:121797478..121797512, - |
| 1.84e-138 | FFCP PHASE1:Hg19::chr19:7766976..7766982,-#_7e71d246e6b13a2fd750c35727459e76 | p9@FCER2 |
| 1.84e-138 | FFCP PHASE2:Hg19::chr19:7766976..7766982,-#_7e71d246e6b13a2fd750c35727459e76 | p9@FCER2 |
| 1.52e-135 | FFCP PHASE2:Hg19::chr9:37037005..37037011,+#_cec111f79d1378964292881f9bd6724b | p@chr9:37037005..37037011, + |
| 1.52e-135 | FFCP PHASE1:Hg19::chr9:37037005..37037011,+#_cec111f79d1378964292881f9bd6724b | p@chr9:37037005..37037011, + |
| 3.9e-131 | FFCP PHASE2:Hg19::chr12:111106975..111106991,-#_045b13f8807ba4a47da413403aad4bfd | p@chr12:111106975..111106991, - |
| 3.9e-131 | FFCP PHASE1:Hg19::chr12:111106975..111106991,-#_045b13f8807ba4a47da413403aad4bfd | p@chr12:111106975..111106991, - |
| 3.51e-130 | FFCP PHASE2:Hg19::chr1:31225180..31225207,-#_40821e424bc7e79e0d0ab42d0cfe499a | p@chr1:31225180..31225207, - |
| 3.51e-130 | FFCP PHASE1:Hg19::chr1:31225180..31225207,-#_40821e424bc7e79e0d0ab42d0cfe499a | p@chr1:31225180..31225207, - |
| 5.16e-123 | FFCP PHASE1:Hg19::chr11:111228348..111228370,-#_2e44331680687c14216e43d518580aa9 | p@chr11:111228348..111228370, - |
| 5.16e-123 | FFCP PHASE2:Hg19::chr11:111228348..111228370,-#_2e44331680687c14216e43d518580aa9 | p@chr11:111228348..111228370, - |
| 9.65e-122 | FFCP PHASE2:Hg19::chr3:112178705..112178716,-#_258cfb312a29d7f37802f0d9ebca2616 | p@chr3:112178705..112178716, - |
| 9.65e-122 | FFCP PHASE1:Hg19::chr3:112178705..112178716,-#_258cfb312a29d7f37802f0d9ebca2616 | p@chr3:112178705..112178716, - |
| 5.62e-121 | FFCP PHASE1:Hg19::chr14:106329470..106329481,-#_e69cdeecff16fed1709fd741bde99a12 | p1@IGHJ6 |
| 5.62e-121 | FFCP PHASE2:Hg19::chr14:106329470..106329481,-#_e69cdeecff16fed1709fd741bde99a12 | p1@IGHJ6 |
| 1.12e-120 | FFCP PHASE1:Hg19::chr8:110535068..110535088,+#_6635f3b262c2a44081a8d4829bf9b99f | p3@PKHD1L1 |
| 1.12e-120 | FFCP PHASE2:Hg19::chr8:110535068..110535088,+#_6635f3b262c2a44081a8d4829bf9b99f | p3@PKHD1L1 |
| 4.51e-120 | FFCP PHASE2:Hg19::chr18:56631315..56631351,+#_bed9e9f275adbf5a69f56a99a2134d56 | p@chr18:56631315..56631351, + |
| 4.51e-120 | FFCP PHASE1:Hg19::chr18:56631315..56631351,+#_bed9e9f275adbf5a69f56a99a2134d56 | p@chr18:56631315..56631351, + |
| 5.49e-120 | FFCP PHASE1:Hg19::chr9:37284234..37284268,+#_392e212429e038e273a78efc0b89f758 | p3@ZCCHC7 |
| 5.49e-120 | FFCP PHASE2:Hg19::chr9:37284234..37284268,+#_392e212429e038e273a78efc0b89f758 | p3@ZCCHC7 |
| 2.35e-119 | FFCP PHASE2:Hg19::chr6:6587579..6587601,-#_d569aac63b33ecc977304a990bb80962 | p3@LY86-AS1 |
| 2.35e-119 | FFCP PHASE1:Hg19::chr6:6587579..6587601,-#_d569aac63b33ecc977304a990bb80962 | p3@LY86-AS1 |
| 7.68e-117 | FFCP PHASE1:Hg19::chr22:22398325..22398339,-#_94ce41d009ca29e6e0c5a0ba962b2505 | p1@PRAMEL |
| 7.68e-117 | FFCP PHASE2:Hg19::chr22:22398325..22398339,-#_94ce41d009ca29e6e0c5a0ba962b2505 | p1@PRAMEL |
| 1.23e-115 | FFCP PHASE2:Hg19::chr17:9955844..9955857,-#_6bc0b96edf138d7a5b742c50632ec327 | p@chr17:9955844..9955857, - |
| 1.23e-115 | FFCP PHASE1:Hg19::chr17:9955844..9955857,-#_6bc0b96edf138d7a5b742c50632ec327 | p@chr17:9955844..9955857, - |
| 1.66e-115 | FFCP PHASE2:Hg19::chr2:232536651..232536664,+#_4b892ceca6bb32e3dcf6187ca748d5f9 | p@chr2:232536651..232536664, + |
| 1.66e-115 | FFCP PHASE1:Hg19::chr2:232536651..232536664,+#_4b892ceca6bb32e3dcf6187ca748d5f9 | p@chr2:232536651..232536664, + |
| 5.28e-115 | FFCP PHASE1:Hg19::chr16:85936539..85936562,+#_09e333d70f4901fc3fa8b27fbbde083e | p3@IRF8 |
| 5.28e-115 | FFCP PHASE2:Hg19::chr16:85936539..85936562,+#_09e333d70f4901fc3fa8b27fbbde083e | p3@IRF8 |
| 7.49e-115 | FFCP PHASE1:Hg19::chr22:50318813..50318835,+#_d407ea6d3a927817c23d5d92fbea3984 | p@chr22:50318813..50318835, + |
| 7.49e-115 | FFCP PHASE2:Hg19::chr22:50318813..50318835,+#_d407ea6d3a927817c23d5d92fbea3984 | p@chr22:50318813..50318835, + |
| 1.85e-114 | FFCP PHASE1:Hg19::chr2:65159562..65159594,-#_c5b03363c90ff1d4fc973c890bec2da1 | p1@LOC400958 |
| 1.85e-114 | FFCP PHASE2:Hg19::chr2:65159562..65159594,-#_c5b03363c90ff1d4fc973c890bec2da1 | p1@LOC400958 |
| 2.05e-114 | FFCP PHASE1:Hg19::chr16:12059021..12059048,+#_b24a20b3961d17ab009d13a13be769c3 | p2@TNFRSF17 |
| 2.05e-114 | FFCP PHASE2:Hg19::chr16:12059021..12059048,+#_b24a20b3961d17ab009d13a13be769c3 | p2@TNFRSF17 |
| 3.02e-114 | FFCP PHASE2:Hg19::chr16:12058994..12059003,+#_1500b9a9bb1c59c4f3b7ed74155a94f5 | p4@TNFRSF17 |
| 3.02e-114 | FFCP PHASE1:Hg19::chr16:12058994..12059003,+#_1500b9a9bb1c59c4f3b7ed74155a94f5 | p4@TNFRSF17 |
| 4.49e-114 | FFCP PHASE1:Hg19::chr11:60233507..60233518,+#_e37f1deebf94be9775703411d97128c2 | p3@MS4A1 |
| 4.49e-114 | FFCP PHASE2:Hg19::chr11:60233507..60233518,+#_e37f1deebf94be9775703411d97128c2 | p3@MS4A1 |
| 2.12e-112 | FFCP PHASE2:Hg19::chr10:98460644..98460661,-#_685098be9c1fc8b77f70c25a95c78ce2 | p5@PIK3AP1 |
| 2.12e-112 | FFCP PHASE1:Hg19::chr10:98460644..98460661,-#_685098be9c1fc8b77f70c25a95c78ce2 | p5@PIK3AP1 |
| 2.96e-112 | FFCP PHASE1:Hg19::chr15:31523055..31523071,-#_8e71330f6d67128e7fb7fcf0a2a5f39c | p1@LOC283710 |
| 2.96e-112 | FFCP PHASE2:Hg19::chr15:31523055..31523071,-#_8e71330f6d67128e7fb7fcf0a2a5f39c | p1@LOC283710 |
| 9.89e-112 | FFCP PHASE2:Hg19::chr14:106328158..106328168,-#_c793bd48bed105eb70c63d2db37fb14f | p6@IGHM |
| 9.89e-112 | FFCP PHASE1:Hg19::chr14:106328158..106328168,-#_c793bd48bed105eb70c63d2db37fb14f | p6@IGHM |
| 8.67e-110 | FFCP PHASE2:Hg19::chr1:111670644..111670656,-#_d306937eef05fdcad5e00f50d3a3d2aa | p7@DRAM2 |
| 8.67e-110 | FFCP PHASE1:Hg19::chr1:111670644..111670656,-#_d306937eef05fdcad5e00f50d3a3d2aa | p7@DRAM2 |
| 2.9e-109 | FFCP PHASE1:Hg19::chr11:14346810..14346831,-#_0846d17bd9b06c6cfbe6e913f4e819f5 | p@chr11:14346810..14346831, - |
| 2.9e-109 | FFCP PHASE2:Hg19::chr11:14346810..14346831,-#_0846d17bd9b06c6cfbe6e913f4e819f5 | p@chr11:14346810..14346831, - |
| 4.14e-109 | FFCP PHASE1:Hg19::chr9:37027587..37027596,-#_0efe13a5500a1b421eddfea145376c96 | p@chr9:37027587..37027596, - |
| 4.14e-109 | FFCP PHASE2:Hg19::chr8:11350850..11350859,+#_0efe13a5500a1b421eddfea145376c96 | p@chr8:11350850..11350859, + |
| 4.14e-109 | FFCP PHASE2:Hg19::chr9:37027587..37027596,-#_0efe13a5500a1b421eddfea145376c96 | p@chr9:37027587..37027596, - |
| 4.14e-109 | FFCP PHASE2:Hg19::chr11:111225012..111225024,-#_0efe13a5500a1b421eddfea145376c96 | p@chr11:111225012..111225024, - |
| 4.14e-109 | FFCP PHASE1:Hg19::chr11:111225012..111225024,-#_0efe13a5500a1b421eddfea145376c96 | p@chr11:111225012..111225024, - |
| 4.14e-109 | FFCP PHASE1:Hg19::chr8:11350850..11350859,+#_0efe13a5500a1b421eddfea145376c96 | p@chr8:11350850..11350859, + |
| 5.57e-109 | FFCP PHASE2:Hg19::chr2:232536534..232536561,-#_f12039e9c610285d6a756ad5aadacd31 | p@chr2:232536534..232536561, - |
| 5.57e-109 | FFCP PHASE1:Hg19::chr2:232536534..232536561,-#_f12039e9c610285d6a756ad5aadacd31 | p@chr2:232536534..232536561, - |
| 6.72e-109 | FFCP PHASE1:Hg19::chr14:106321725..106321735,-#_771c9996b39fbbfdbabbffead458bb01 | p7@FJ197674 |
| 6.72e-109 | FFCP PHASE2:Hg19::chr14:106321725..106321735,-#_771c9996b39fbbfdbabbffead458bb01 | p7@FJ197674 |
| 2.91e-108 | FFCP PHASE1:Hg19::chr14:106328131..106328143,-#_195aa52efcec53fe2f10d269034571de | p4@IGHM |
| 2.91e-108 | FFCP PHASE2:Hg19::chr14:106328131..106328143,-#_195aa52efcec53fe2f10d269034571de | p4@IGHM |
| 4.43e-108 | FFCP PHASE1:Hg19::chr19:18209729..18209742,-#_6fad989dfc2eb9bfa96d98867543392a | p3@IL12RB1 |
| 4.43e-108 | FFCP PHASE2:Hg19::chr19:18209729..18209742,-#_6fad989dfc2eb9bfa96d98867543392a | p3@IL12RB1 |
| 6.46e-108 | FFCP PHASE1:Hg19::chr13:31019875..31019895,+#_0858e01c27ea6cf7745ad7fee7a6a613 | p@chr13:31019875..31019895, + |
| 6.46e-108 | FFCP PHASE2:Hg19::chr13:31019875..31019895,+#_0858e01c27ea6cf7745ad7fee7a6a613 | p@chr13:31019875..31019895, + |
| 3.54e-107 | FFCP PHASE2:Hg19::chr12:111107001..111107019,-#_7d226c1bbce6255653f23aba709b7545 | p@chr12:111107001..111107019, - |
| 3.54e-107 | FFCP PHASE1:Hg19::chr12:111107001..111107019,-#_7d226c1bbce6255653f23aba709b7545 | p@chr12:111107001..111107019, - |
| 2.64e-106 | FFCP PHASE2:Hg19::chr2:17934493..17934510,+#_a444123442897b8e2d44d0ac390ae353 | p@chr2:17934493..17934510, + |
| 2.64e-106 | FFCP PHASE1:Hg19::chr2:17934493..17934510,+#_a444123442897b8e2d44d0ac390ae353 | p@chr2:17934493..17934510, + |
| 8.6e-106 | FFCP PHASE2:Hg19::chr19:7764975..7764994,-#_b01102454ec495272d6c3ac0f0537e14 | p7@FCER2 |
| 8.6e-106 | FFCP PHASE1:Hg19::chr19:7764975..7764994,-#_b01102454ec495272d6c3ac0f0537e14 | p7@FCER2 |
| 2.32e-105 | FFCP PHASE1:Hg19::chr19:42385139..42385152,+#_b467132520179444b1c042afcac9d00f | p@chr19:42385139..42385152, + |
| 2.32e-105 | FFCP PHASE2:Hg19::chr19:42385139..42385152,+#_b467132520179444b1c042afcac9d00f | p@chr19:42385139..42385152, + |
| 3.56e-105 | FFCP PHASE2:Hg19::chr22:42322346..42322363,-#_586f29cb0e9da2bc86199ceb25498aa1 | p@chr22:42322346..42322363, - |
| 3.56e-105 | FFCP PHASE1:Hg19::chr22:42322346..42322363,-#_586f29cb0e9da2bc86199ceb25498aa1 | p@chr22:42322346..42322363, - |
| 4.83e-105 | FFCP PHASE1:Hg19::chr11:111224975..111224995,-#_c1b0aa5cb229ab2967cc408f43b9a481 | p@chr11:111224975..111224995, - |
| 4.83e-105 | FFCP PHASE2:Hg19::chr11:111224975..111224995,-#_c1b0aa5cb229ab2967cc408f43b9a481 | p@chr11:111224975..111224995, - |
| 7.41e-105 | FFCP PHASE1:Hg19::chr11:111225158..111225201,+#_455abc824fa6ea9c18f904f0625512b0 | p1@CU689419 |
| 7.41e-105 | FFCP PHASE2:Hg19::chr11:111225158..111225201,+#_455abc824fa6ea9c18f904f0625512b0 | p1@CU689419 |
| 1.77e-104 | FFCP PHASE2:Hg19::chr11:111225132..111225169,-#_ccb74cb27d0875554ad5378c1f3e5712 | p@chr11:111225132..111225169, - |
| 1.77e-104 | FFCP PHASE1:Hg19::chr11:111225132..111225169,-#_ccb74cb27d0875554ad5378c1f3e5712 | p@chr11:111225132..111225169, - |
| 6.11e-104 | FFCP PHASE1:Hg19::chr9:95491611..95491638,-#_8110c27399a8beeb54099cb323e33348 | p@chr9:95491611..95491638, - |
| 6.11e-104 | FFCP PHASE2:Hg19::chr9:95491611..95491638,-#_8110c27399a8beeb54099cb323e33348 | p@chr9:95491611..95491638, - |
| 5.34e-103 | FFCP PHASE2:Hg19::chr8:110535027..110535055,+#_357eaf4722c0373d9f4e7b99e909edd7 | p2@PKHD1L1 |
| 5.34e-103 | FFCP PHASE1:Hg19::chr8:110535027..110535055,+#_357eaf4722c0373d9f4e7b99e909edd7 | p2@PKHD1L1 |
| 7.65e-103 | FFCP PHASE1:Hg19::chr14:106321710..106321722,-#_edb3a2a75fcf47d4b30268f38a37e124 | p3@FJ197674 |
| 7.65e-103 | FFCP PHASE2:Hg19::chr14:106321710..106321722,-#_edb3a2a75fcf47d4b30268f38a37e124 | p3@FJ197674 |
| 6.14e-102 | FFCP PHASE1:Hg19::chr19:35837510..35837514,+#_39eded857dd04df393acbba46e26b559 | p@chr19:35837510..35837514, + |
| 6.14e-102 | FFCP PHASE2:Hg19::chr19:35837510..35837514,+#_39eded857dd04df393acbba46e26b559 | p@chr19:35837510..35837514, + |
| 1.06e-101 | FFCP PHASE2:Hg19::chr11:111225198..111225226,-#_441e399c89b52fa7c8bff586d69f8c73 | p@chr11:111225198..111225226, - |
| 1.06e-101 | FFCP PHASE1:Hg19::chr11:111225198..111225226,-#_441e399c89b52fa7c8bff586d69f8c73 | p@chr11:111225198..111225226, - |
| 1.28e-101 | FFCP PHASE2:Hg19::chr14:106322154..106322163,-#_6892e0992f2ab7b76ec143c44c84966e | p3@AJ294734 |
| 1.28e-101 | FFCP PHASE1:Hg19::chr14:106322154..106322163,-#_6892e0992f2ab7b76ec143c44c84966e | p3@AJ294734 |
