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{{CL
{{CL
|id=CL:0000945
|alt_id=
|name=lymphocyte of B lineage
|namespace=cell;;efo
|def="A lymphocyte of B lineage is a lymphocyte that expresses CD19 on the cell surface. An additional defining characteristic is the commitment to express an immunoglobulin complex." [GO_REF:0000031, GOC:add, GOC:rhs, GOC:tfm, ISBN:0781735149]
|xref=
|is_a=CL:0000542
|synonym=
|comment=Types of B lineage lymphocytes include B cells and antibody secreting cells (plasmablasts and plasma cells).
|comment=Types of B lineage lymphocytes include B cells and antibody secreting cells (plasmablasts and plasma cells).
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A lymphocyte of B lineage is a lymphocyte that expresses CD19 on the cell surface. An additional defining characteristic is the commitment to express an immunoglobulin complex." [GO_REF:0000031, GOC:add, GOC:rhs, GOC:tfm, ISBN:0781735149]
|subset=
|derives_from=
|derives_from=
|develops_from=CL:0000826
|develops_from=CL:0000826
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0000945
|is_a=CL:0000542
|is_obsolete=
|located_in=
|located_in=
|name=lymphocyte of B lineage
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=
}}
}}

Latest revision as of 16:39, 12 September 2014

Name:lymphocyte of B lineage
Namespace:FANTOM
Definition:"A lymphocyte of B lineage is a lymphocyte that expresses CD19 on the cell surface. An additional defining characteristic is the commitment to express an immunoglobulin complex." [GO_REF:0000031, GOC:add, GOC:rhs, GOC:tfm, ISBN:0781735149]
Comments:Types of B lineage lymphocytes include B cells and antibody secreting cells (plasmablasts and plasma cells).


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000542(lymphocyte)
develops_from:CL:0000826(pro-B cell)



Children


is a:CL:0000236 (B cell),CL:0000946 (antibody secreting cell),[[]] ()
disjoint from:CL:0000084 (T cell)
derives from:FF:0100899 (myeloma cell line sample),FF:0101518 (B-lymphoma cell line sample),FF:0101522 (B-lymphocyte cell line sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000945 (lymphocyte of B lineage), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
6.92e-147FFCP PHASE2:Hg19::chr11:111224819..111224845,+#_deff987030da2a556e280328f19f879ep2@CU689419
6.92e-147FFCP PHASE1:Hg19::chr11:111224819..111224845,+#_deff987030da2a556e280328f19f879ep2@CU689419
6.67e-144FFCP PHASE1:Hg19::chr5:132439186..132439209,+#_7759df4a8640cc2c0b50670e5795af7fp13@HSPA4
6.67e-144FFCP PHASE2:Hg19::chr5:132439186..132439209,+#_7759df4a8640cc2c0b50670e5795af7fp13@HSPA4
3.04e-141FFCP PHASE2:Hg19::chr3:121797478..121797512,-#_8815fe3cc193e893d921de38d99ad926p@chr3:121797478..121797512, -
3.04e-141FFCP PHASE1:Hg19::chr3:121797478..121797512,-#_8815fe3cc193e893d921de38d99ad926p@chr3:121797478..121797512, -
1.84e-138FFCP PHASE1:Hg19::chr19:7766976..7766982,-#_7e71d246e6b13a2fd750c35727459e76p9@FCER2
1.84e-138FFCP PHASE2:Hg19::chr19:7766976..7766982,-#_7e71d246e6b13a2fd750c35727459e76p9@FCER2
1.52e-135FFCP PHASE2:Hg19::chr9:37037005..37037011,+#_cec111f79d1378964292881f9bd6724bp@chr9:37037005..37037011, +
1.52e-135FFCP PHASE1:Hg19::chr9:37037005..37037011,+#_cec111f79d1378964292881f9bd6724bp@chr9:37037005..37037011, +
3.9e-131FFCP PHASE2:Hg19::chr12:111106975..111106991,-#_045b13f8807ba4a47da413403aad4bfdp@chr12:111106975..111106991, -
3.9e-131FFCP PHASE1:Hg19::chr12:111106975..111106991,-#_045b13f8807ba4a47da413403aad4bfdp@chr12:111106975..111106991, -
3.51e-130FFCP PHASE2:Hg19::chr1:31225180..31225207,-#_40821e424bc7e79e0d0ab42d0cfe499ap@chr1:31225180..31225207, -
3.51e-130FFCP PHASE1:Hg19::chr1:31225180..31225207,-#_40821e424bc7e79e0d0ab42d0cfe499ap@chr1:31225180..31225207, -
5.16e-123FFCP PHASE1:Hg19::chr11:111228348..111228370,-#_2e44331680687c14216e43d518580aa9p@chr11:111228348..111228370, -
5.16e-123FFCP PHASE2:Hg19::chr11:111228348..111228370,-#_2e44331680687c14216e43d518580aa9p@chr11:111228348..111228370, -
9.65e-122FFCP PHASE2:Hg19::chr3:112178705..112178716,-#_258cfb312a29d7f37802f0d9ebca2616p@chr3:112178705..112178716, -
9.65e-122FFCP PHASE1:Hg19::chr3:112178705..112178716,-#_258cfb312a29d7f37802f0d9ebca2616p@chr3:112178705..112178716, -
5.62e-121FFCP PHASE1:Hg19::chr14:106329470..106329481,-#_e69cdeecff16fed1709fd741bde99a12p1@IGHJ6
5.62e-121FFCP PHASE2:Hg19::chr14:106329470..106329481,-#_e69cdeecff16fed1709fd741bde99a12p1@IGHJ6
1.12e-120FFCP PHASE1:Hg19::chr8:110535068..110535088,+#_6635f3b262c2a44081a8d4829bf9b99fp3@PKHD1L1
1.12e-120FFCP PHASE2:Hg19::chr8:110535068..110535088,+#_6635f3b262c2a44081a8d4829bf9b99fp3@PKHD1L1
4.51e-120FFCP PHASE2:Hg19::chr18:56631315..56631351,+#_bed9e9f275adbf5a69f56a99a2134d56p@chr18:56631315..56631351, +
4.51e-120FFCP PHASE1:Hg19::chr18:56631315..56631351,+#_bed9e9f275adbf5a69f56a99a2134d56p@chr18:56631315..56631351, +
5.49e-120FFCP PHASE1:Hg19::chr9:37284234..37284268,+#_392e212429e038e273a78efc0b89f758p3@ZCCHC7
5.49e-120FFCP PHASE2:Hg19::chr9:37284234..37284268,+#_392e212429e038e273a78efc0b89f758p3@ZCCHC7
2.35e-119FFCP PHASE2:Hg19::chr6:6587579..6587601,-#_d569aac63b33ecc977304a990bb80962p3@LY86-AS1
2.35e-119FFCP PHASE1:Hg19::chr6:6587579..6587601,-#_d569aac63b33ecc977304a990bb80962p3@LY86-AS1
7.68e-117FFCP PHASE1:Hg19::chr22:22398325..22398339,-#_94ce41d009ca29e6e0c5a0ba962b2505p1@PRAMEL
7.68e-117FFCP PHASE2:Hg19::chr22:22398325..22398339,-#_94ce41d009ca29e6e0c5a0ba962b2505p1@PRAMEL
1.23e-115FFCP PHASE2:Hg19::chr17:9955844..9955857,-#_6bc0b96edf138d7a5b742c50632ec327p@chr17:9955844..9955857, -
1.23e-115FFCP PHASE1:Hg19::chr17:9955844..9955857,-#_6bc0b96edf138d7a5b742c50632ec327p@chr17:9955844..9955857, -
1.66e-115FFCP PHASE2:Hg19::chr2:232536651..232536664,+#_4b892ceca6bb32e3dcf6187ca748d5f9p@chr2:232536651..232536664, +
1.66e-115FFCP PHASE1:Hg19::chr2:232536651..232536664,+#_4b892ceca6bb32e3dcf6187ca748d5f9p@chr2:232536651..232536664, +
5.28e-115FFCP PHASE1:Hg19::chr16:85936539..85936562,+#_09e333d70f4901fc3fa8b27fbbde083ep3@IRF8
5.28e-115FFCP PHASE2:Hg19::chr16:85936539..85936562,+#_09e333d70f4901fc3fa8b27fbbde083ep3@IRF8
7.49e-115FFCP PHASE1:Hg19::chr22:50318813..50318835,+#_d407ea6d3a927817c23d5d92fbea3984p@chr22:50318813..50318835, +
7.49e-115FFCP PHASE2:Hg19::chr22:50318813..50318835,+#_d407ea6d3a927817c23d5d92fbea3984p@chr22:50318813..50318835, +
1.85e-114FFCP PHASE1:Hg19::chr2:65159562..65159594,-#_c5b03363c90ff1d4fc973c890bec2da1p1@LOC400958
1.85e-114FFCP PHASE2:Hg19::chr2:65159562..65159594,-#_c5b03363c90ff1d4fc973c890bec2da1p1@LOC400958
2.05e-114FFCP PHASE1:Hg19::chr16:12059021..12059048,+#_b24a20b3961d17ab009d13a13be769c3p2@TNFRSF17
2.05e-114FFCP PHASE2:Hg19::chr16:12059021..12059048,+#_b24a20b3961d17ab009d13a13be769c3p2@TNFRSF17
3.02e-114FFCP PHASE2:Hg19::chr16:12058994..12059003,+#_1500b9a9bb1c59c4f3b7ed74155a94f5p4@TNFRSF17
3.02e-114FFCP PHASE1:Hg19::chr16:12058994..12059003,+#_1500b9a9bb1c59c4f3b7ed74155a94f5p4@TNFRSF17
4.49e-114FFCP PHASE1:Hg19::chr11:60233507..60233518,+#_e37f1deebf94be9775703411d97128c2p3@MS4A1
4.49e-114FFCP PHASE2:Hg19::chr11:60233507..60233518,+#_e37f1deebf94be9775703411d97128c2p3@MS4A1
2.12e-112FFCP PHASE2:Hg19::chr10:98460644..98460661,-#_685098be9c1fc8b77f70c25a95c78ce2p5@PIK3AP1
2.12e-112FFCP PHASE1:Hg19::chr10:98460644..98460661,-#_685098be9c1fc8b77f70c25a95c78ce2p5@PIK3AP1
2.96e-112FFCP PHASE1:Hg19::chr15:31523055..31523071,-#_8e71330f6d67128e7fb7fcf0a2a5f39cp1@LOC283710
2.96e-112FFCP PHASE2:Hg19::chr15:31523055..31523071,-#_8e71330f6d67128e7fb7fcf0a2a5f39cp1@LOC283710
9.89e-112FFCP PHASE2:Hg19::chr14:106328158..106328168,-#_c793bd48bed105eb70c63d2db37fb14fp6@IGHM
9.89e-112FFCP PHASE1:Hg19::chr14:106328158..106328168,-#_c793bd48bed105eb70c63d2db37fb14fp6@IGHM
8.67e-110FFCP PHASE2:Hg19::chr1:111670644..111670656,-#_d306937eef05fdcad5e00f50d3a3d2aap7@DRAM2
8.67e-110FFCP PHASE1:Hg19::chr1:111670644..111670656,-#_d306937eef05fdcad5e00f50d3a3d2aap7@DRAM2
2.9e-109FFCP PHASE1:Hg19::chr11:14346810..14346831,-#_0846d17bd9b06c6cfbe6e913f4e819f5p@chr11:14346810..14346831, -
2.9e-109FFCP PHASE2:Hg19::chr11:14346810..14346831,-#_0846d17bd9b06c6cfbe6e913f4e819f5p@chr11:14346810..14346831, -
4.14e-109FFCP PHASE1:Hg19::chr9:37027587..37027596,-#_0efe13a5500a1b421eddfea145376c96p@chr9:37027587..37027596, -
4.14e-109FFCP PHASE2:Hg19::chr8:11350850..11350859,+#_0efe13a5500a1b421eddfea145376c96p@chr8:11350850..11350859, +
4.14e-109FFCP PHASE2:Hg19::chr9:37027587..37027596,-#_0efe13a5500a1b421eddfea145376c96p@chr9:37027587..37027596, -
4.14e-109FFCP PHASE2:Hg19::chr11:111225012..111225024,-#_0efe13a5500a1b421eddfea145376c96p@chr11:111225012..111225024, -
4.14e-109FFCP PHASE1:Hg19::chr11:111225012..111225024,-#_0efe13a5500a1b421eddfea145376c96p@chr11:111225012..111225024, -
4.14e-109FFCP PHASE1:Hg19::chr8:11350850..11350859,+#_0efe13a5500a1b421eddfea145376c96p@chr8:11350850..11350859, +
5.57e-109FFCP PHASE2:Hg19::chr2:232536534..232536561,-#_f12039e9c610285d6a756ad5aadacd31p@chr2:232536534..232536561, -
5.57e-109FFCP PHASE1:Hg19::chr2:232536534..232536561,-#_f12039e9c610285d6a756ad5aadacd31p@chr2:232536534..232536561, -
6.72e-109FFCP PHASE1:Hg19::chr14:106321725..106321735,-#_771c9996b39fbbfdbabbffead458bb01p7@FJ197674
6.72e-109FFCP PHASE2:Hg19::chr14:106321725..106321735,-#_771c9996b39fbbfdbabbffead458bb01p7@FJ197674
2.91e-108FFCP PHASE1:Hg19::chr14:106328131..106328143,-#_195aa52efcec53fe2f10d269034571dep4@IGHM
2.91e-108FFCP PHASE2:Hg19::chr14:106328131..106328143,-#_195aa52efcec53fe2f10d269034571dep4@IGHM
4.43e-108FFCP PHASE1:Hg19::chr19:18209729..18209742,-#_6fad989dfc2eb9bfa96d98867543392ap3@IL12RB1
4.43e-108FFCP PHASE2:Hg19::chr19:18209729..18209742,-#_6fad989dfc2eb9bfa96d98867543392ap3@IL12RB1
6.46e-108FFCP PHASE1:Hg19::chr13:31019875..31019895,+#_0858e01c27ea6cf7745ad7fee7a6a613p@chr13:31019875..31019895, +
6.46e-108FFCP PHASE2:Hg19::chr13:31019875..31019895,+#_0858e01c27ea6cf7745ad7fee7a6a613p@chr13:31019875..31019895, +
3.54e-107FFCP PHASE2:Hg19::chr12:111107001..111107019,-#_7d226c1bbce6255653f23aba709b7545p@chr12:111107001..111107019, -
3.54e-107FFCP PHASE1:Hg19::chr12:111107001..111107019,-#_7d226c1bbce6255653f23aba709b7545p@chr12:111107001..111107019, -
2.64e-106FFCP PHASE2:Hg19::chr2:17934493..17934510,+#_a444123442897b8e2d44d0ac390ae353p@chr2:17934493..17934510, +
2.64e-106FFCP PHASE1:Hg19::chr2:17934493..17934510,+#_a444123442897b8e2d44d0ac390ae353p@chr2:17934493..17934510, +
8.6e-106FFCP PHASE2:Hg19::chr19:7764975..7764994,-#_b01102454ec495272d6c3ac0f0537e14p7@FCER2
8.6e-106FFCP PHASE1:Hg19::chr19:7764975..7764994,-#_b01102454ec495272d6c3ac0f0537e14p7@FCER2
2.32e-105FFCP PHASE1:Hg19::chr19:42385139..42385152,+#_b467132520179444b1c042afcac9d00fp@chr19:42385139..42385152, +
2.32e-105FFCP PHASE2:Hg19::chr19:42385139..42385152,+#_b467132520179444b1c042afcac9d00fp@chr19:42385139..42385152, +
3.56e-105FFCP PHASE2:Hg19::chr22:42322346..42322363,-#_586f29cb0e9da2bc86199ceb25498aa1p@chr22:42322346..42322363, -
3.56e-105FFCP PHASE1:Hg19::chr22:42322346..42322363,-#_586f29cb0e9da2bc86199ceb25498aa1p@chr22:42322346..42322363, -
4.83e-105FFCP PHASE1:Hg19::chr11:111224975..111224995,-#_c1b0aa5cb229ab2967cc408f43b9a481p@chr11:111224975..111224995, -
4.83e-105FFCP PHASE2:Hg19::chr11:111224975..111224995,-#_c1b0aa5cb229ab2967cc408f43b9a481p@chr11:111224975..111224995, -
7.41e-105FFCP PHASE1:Hg19::chr11:111225158..111225201,+#_455abc824fa6ea9c18f904f0625512b0p1@CU689419
7.41e-105FFCP PHASE2:Hg19::chr11:111225158..111225201,+#_455abc824fa6ea9c18f904f0625512b0p1@CU689419
1.77e-104FFCP PHASE2:Hg19::chr11:111225132..111225169,-#_ccb74cb27d0875554ad5378c1f3e5712p@chr11:111225132..111225169, -
1.77e-104FFCP PHASE1:Hg19::chr11:111225132..111225169,-#_ccb74cb27d0875554ad5378c1f3e5712p@chr11:111225132..111225169, -
6.11e-104FFCP PHASE1:Hg19::chr9:95491611..95491638,-#_8110c27399a8beeb54099cb323e33348p@chr9:95491611..95491638, -
6.11e-104FFCP PHASE2:Hg19::chr9:95491611..95491638,-#_8110c27399a8beeb54099cb323e33348p@chr9:95491611..95491638, -
5.34e-103FFCP PHASE2:Hg19::chr8:110535027..110535055,+#_357eaf4722c0373d9f4e7b99e909edd7p2@PKHD1L1
5.34e-103FFCP PHASE1:Hg19::chr8:110535027..110535055,+#_357eaf4722c0373d9f4e7b99e909edd7p2@PKHD1L1
7.65e-103FFCP PHASE1:Hg19::chr14:106321710..106321722,-#_edb3a2a75fcf47d4b30268f38a37e124p3@FJ197674
7.65e-103FFCP PHASE2:Hg19::chr14:106321710..106321722,-#_edb3a2a75fcf47d4b30268f38a37e124p3@FJ197674
6.14e-102FFCP PHASE1:Hg19::chr19:35837510..35837514,+#_39eded857dd04df393acbba46e26b559p@chr19:35837510..35837514, +
6.14e-102FFCP PHASE2:Hg19::chr19:35837510..35837514,+#_39eded857dd04df393acbba46e26b559p@chr19:35837510..35837514, +
1.06e-101FFCP PHASE2:Hg19::chr11:111225198..111225226,-#_441e399c89b52fa7c8bff586d69f8c73p@chr11:111225198..111225226, -
1.06e-101FFCP PHASE1:Hg19::chr11:111225198..111225226,-#_441e399c89b52fa7c8bff586d69f8c73p@chr11:111225198..111225226, -
1.28e-101FFCP PHASE2:Hg19::chr14:106322154..106322163,-#_6892e0992f2ab7b76ec143c44c84966ep3@AJ294734
1.28e-101FFCP PHASE1:Hg19::chr14:106322154..106322163,-#_6892e0992f2ab7b76ec143c44c84966ep3@AJ294734

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