CL:0000898: Difference between revisions
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|name=naive T cell | |name=naive T cell | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of= | ||
Latest revision as of 16:38, 12 September 2014
| Name: | naive T cell |
|---|---|
| Namespace: | FANTOM |
| Definition: | "Mature T cell not yet exposed to antigen with the phenotype CCR7-positive, CD45RA-positive, and CD127-positive. This cell type is also described as being CD25-negative, CD62L-high and CD44-low." [GO_REF:0000031, GOC:add, GOC:pam, GOC:tfm, PMID:19100699] |
| Synonyms: |
"naive T lymphocyte" EXACT [] "naive T-cell" EXACT [] "naive T-lymphocyte" EXACT [] |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0002419(mature T cell) |
|---|
Children
| is a: | CL:0000895 (naive thymus-derived CD4-positive, alpha-beta T cell),CL:0002677 (naive regulatory T cell) |
|---|---|
| disjoint from: | CL:0000813 (memory T cell) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11780-124A7 (CD4+CD25+CD45RA+ naive regulatory T cells, donor1)
- 11782-124A9 (CD4+CD25+CD45RA- memory regulatory T cells, donor1)
- 11786-124B4 (CD4+CD25-CD45RA- memory conventional T cells, donor1)
- 11813-124E4 (CD4+CD25-CD44- naive conventional T cells, pool1 (C57BL_6J))
- 11815-124E6 (CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool1 (C57BL_6J))
- 11816-124E7 (CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool1 (C57BL_6J))
- 11817-124E8 (CD4+CD25-CD44- naive conventional T cells, pool2 (Balb_cAJcl))
- 11819-124F1 (CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool2 (Balb_cAJcl))
- 11820-124F2 (CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool2 (Balb_cAJcl))
Mouse (Mus musculus)
- 11780-124A7 (CD4+CD25+CD45RA+ naive regulatory T cells, donor1)
- 11782-124A9 (CD4+CD25+CD45RA- memory regulatory T cells, donor1)
- 11786-124B4 (CD4+CD25-CD45RA- memory conventional T cells, donor1)
- 11813-124E4 (CD4+CD25-CD44- naive conventional T cells, pool1 (C57BL_6J))
- 11815-124E6 (CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool1 (C57BL_6J))
- 11816-124E7 (CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool1 (C57BL_6J))
- 11817-124E8 (CD4+CD25-CD44- naive conventional T cells, pool2 (Balb_cAJcl))
- 11819-124F1 (CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool2 (Balb_cAJcl))
- 11820-124F2 (CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool2 (Balb_cAJcl))
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000898 (naive T cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 6.24e-88 | FFCP PHASE1:Hg19::chr1:113160702..113160706,-#_0e6a555c017994ed14f9f27d9b9f697f | p21@ST7L |
| 6.24e-88 | FFCP PHASE2:Hg19::chr1:113160702..113160706,-#_0e6a555c017994ed14f9f27d9b9f697f | p21@ST7L |
| 1.36e-86 | FFCP PHASE1:Mm9::chr13:30878406..30878419,+#_45c0a2126c7877feb5d999ce26f98663 | p@chr13:30878406..30878419, + |
| 1.36e-86 | FFCP PHASE2:Mm9::chrX:54476786..54476810,+#_45c0a2126c7877feb5d999ce26f98663 | p@chrX:54476786..54476810, + |
| 1.36e-86 | FFCP PHASE1:Mm9::chrX:54476786..54476810,+#_45c0a2126c7877feb5d999ce26f98663 | p@chrX:54476786..54476810, + |
| 1.36e-86 | FFCP PHASE2:Mm9::chr13:30878406..30878419,+#_45c0a2126c7877feb5d999ce26f98663 | p@chr13:30878406..30878419, + |
| 1.01e-74 | FFCP PHASE1:Mm9::chr16:52032670..52032685,+#_9884e2aa3b61967731720194b725a5b9 | p@chr16:52032670..52032685, + |
| 1.01e-74 | FFCP PHASE2:Mm9::chr16:52032670..52032685,+#_9884e2aa3b61967731720194b725a5b9 | p@chr16:52032670..52032685, + |
| 1.66e-74 | FFCP PHASE1:Hg19::chr8:1709009..1709019,-#_8677c07e684fdc4afc5a720fab195413 | p1@BC025336 |
| 1.66e-74 | FFCP PHASE2:Hg19::chr8:1709009..1709019,-#_8677c07e684fdc4afc5a720fab195413 | p1@BC025336 |
| 2.41e-74 | FFCP PHASE2:Mm9::chr16:93777453..93777464,+#_5bc897c4c8d830c640d716873849f2ae | p@chr16:93777453..93777464, + |
| 2.41e-74 | FFCP PHASE1:Mm9::chr16:93777453..93777464,+#_5bc897c4c8d830c640d716873849f2ae | p@chr16:93777453..93777464, + |
| 2.41e-74 | FFCP PHASE2:Mm9::chr14:54795946..54795960,+#_5bc897c4c8d830c640d716873849f2ae | p1@ENSMUST00000103701 |
| 2.41e-74 | FFCP PHASE1:Mm9::chr14:54795946..54795960,+#_5bc897c4c8d830c640d716873849f2ae | p1@ENSMUST00000103701 |
| 2.48e-72 | FFCP PHASE1:Mm9::chr15:80403112..80403122,+#_e0fbc23f46ccd6199e51917edd62aa44 | p12@Grap2 |
| 2.48e-72 | FFCP PHASE2:Mm9::chr14:54827490..54827502,+#_e0fbc23f46ccd6199e51917edd62aa44 | p@chr14:54827490..54827502, + |
| 2.48e-72 | FFCP PHASE1:Mm9::chr11:11587720..11587735,+#_e0fbc23f46ccd6199e51917edd62aa44 | p@chr11:11587720..11587735, + |
| 2.48e-72 | FFCP PHASE2:Mm9::chr11:11587720..11587735,+#_e0fbc23f46ccd6199e51917edd62aa44 | p@chr11:11587720..11587735, + |
| 2.48e-72 | FFCP PHASE1:Mm9::chr13:30853488..30853499,+#_e0fbc23f46ccd6199e51917edd62aa44 | p@chr13:30853488..30853499, + |
| 2.48e-72 | FFCP PHASE1:Mm9::chr14:54827490..54827502,+#_e0fbc23f46ccd6199e51917edd62aa44 | p@chr14:54827490..54827502, + |
| 2.48e-72 | FFCP PHASE2:Mm9::chr14:122362270..122362291,-#_e0fbc23f46ccd6199e51917edd62aa44 | p@chr14:122362270..122362291, - |
| 2.48e-72 | FFCP PHASE2:Mm9::chr11:11592840..11592849,+#_e0fbc23f46ccd6199e51917edd62aa44 | p@chr11:11592840..11592849, + |
| 2.48e-72 | FFCP PHASE2:Mm9::chr13:30853488..30853499,+#_e0fbc23f46ccd6199e51917edd62aa44 | p@chr13:30853488..30853499, + |
| 2.48e-72 | FFCP PHASE1:Mm9::chr11:11592840..11592849,+#_e0fbc23f46ccd6199e51917edd62aa44 | p@chr11:11592840..11592849, + |
| 2.48e-72 | FFCP PHASE2:Mm9::chr15:80403112..80403122,+#_e0fbc23f46ccd6199e51917edd62aa44 | p12@Grap2 |
| 2.48e-72 | FFCP PHASE1:Mm9::chr14:122362270..122362291,-#_e0fbc23f46ccd6199e51917edd62aa44 | p@chr14:122362270..122362291, - |
| 7.85e-67 | FFCP PHASE1:Hg19::chr8:1708601..1708607,+#_2d481c41ea5db668b3d3a0901775417a | p@chr8:1708601..1708607, + |
| 7.85e-67 | FFCP PHASE2:Hg19::chr8:1708601..1708607,+#_2d481c41ea5db668b3d3a0901775417a | p@chr8:1708601..1708607, + |
| 1.23e-66 | FFCP PHASE2:Hg19::chrX:153238522..153238533,-#_0693803d27b5a4e14ac753d07b7e83be | p@chrX:153238522..153238533, - |
| 1.23e-66 | FFCP PHASE1:Hg19::chrX:153238522..153238533,-#_0693803d27b5a4e14ac753d07b7e83be | p@chrX:153238522..153238533, - |
| 1.71e-66 | FFCP PHASE2:Hg19::chr11:111410267..111410269,+#_15dbfbc0ec1948d3f204290393d22a8a | p@chr11:111410267..111410269, + |
| 1.71e-66 | FFCP PHASE1:Hg19::chr11:111410267..111410269,+#_15dbfbc0ec1948d3f204290393d22a8a | p@chr11:111410267..111410269, + |
| 1.92e-66 | FFCP PHASE1:Hg19::chr3:66444556..66444563,-#_cb7bb655692e46c1f1814a28b93e1d9b | p@chr3:66444556..66444563, - |
| 1.92e-66 | FFCP PHASE2:Hg19::chr3:66444556..66444563,-#_cb7bb655692e46c1f1814a28b93e1d9b | p@chr3:66444556..66444563, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr3:73015629..73015632,+#_42563d1820aa30a9c82a335dfbbeedc6 | p@chr3:73015629..73015632, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr3:73015629..73015632,+#_42563d1820aa30a9c82a335dfbbeedc6 | p@chr3:73015629..73015632, + |
| 3.01e-66 | FFCP PHASE2:Hg19::chr10:6337053..6337076,+#_645827c27322427a1add7d3bf330a7db | p@chr10:6337053..6337076, + |
| 3.01e-66 | FFCP PHASE1:Hg19::chr10:6337053..6337076,+#_645827c27322427a1add7d3bf330a7db | p@chr10:6337053..6337076, + |
| 3.35e-66 | FFCP PHASE1:Hg19::chr10:116301431..116301440,+#_104dac11964e6565862d3770b6001925 | p@chr10:116301431..116301440, + |
| 3.35e-66 | FFCP PHASE1:Hg19::chr12:53039683..53039695,+#_104dac11964e6565862d3770b6001925 | p@chr12:53039683..53039695, + |
| 3.35e-66 | FFCP PHASE2:Hg19::chr10:116301431..116301440,+#_104dac11964e6565862d3770b6001925 | p@chr10:116301431..116301440, + |
| 3.35e-66 | FFCP PHASE2:Hg19::chr12:53039683..53039695,+#_104dac11964e6565862d3770b6001925 | p@chr12:53039683..53039695, + |
| 4.68e-66 | FFCP PHASE1:Hg19::chr6:167527627..167527634,-#_e2d64b51206373f86df1ea6da43002d8 | p@chr6:167527627..167527634, - |
| 4.68e-66 | FFCP PHASE2:Hg19::chr6:167527627..167527634,-#_e2d64b51206373f86df1ea6da43002d8 | p@chr6:167527627..167527634, - |
| 6.53e-66 | FFCP PHASE2:Hg19::chr12:8472866..8472868,-#_d6f8e3e64d83caea80435481f4abfb59 | p@chr12:8472866..8472868, - |
| 6.53e-66 | FFCP PHASE1:Hg19::chr12:8472866..8472868,-#_d6f8e3e64d83caea80435481f4abfb59 | p@chr12:8472866..8472868, - |
| 1.05e-65 | FFCP PHASE1:Mm9::chr14:53242248..53242261,+#_6bdd723be00fda3b84690ee8bae866a6 | p@chr14:53242248..53242261, + |
| 1.05e-65 | FFCP PHASE2:Mm9::chr14:53242248..53242261,+#_6bdd723be00fda3b84690ee8bae866a6 | p@chr14:53242248..53242261, + |
| 1.74e-65 | FFCP PHASE1:Mm9::chr5:123439274..123439290,+#_02670d72da72016cabbf5861daafbbf7 | p4@ENSMUST00000148466, p4@uc008zmw.1 |
| 1.74e-65 | FFCP PHASE2:Mm9::chr5:123439274..123439290,+#_02670d72da72016cabbf5861daafbbf7 | p4@ENSMUST00000148466, p4@uc008zmw.1 |
| 2.25e-65 | FFCP PHASE2:Mm9::chr15:80403104..80403111,+#_fca3ff5343d0480ea74e60b6096e6f40 | p10@Grap2 |
| 2.25e-65 | FFCP PHASE2:Mm9::chr1:140069290..140069308,+#_fca3ff5343d0480ea74e60b6096e6f40 | p@chr1:140069290..140069308, + |
| 2.25e-65 | FFCP PHASE2:Mm9::chr5:123465978..123465989,-#_fca3ff5343d0480ea74e60b6096e6f40 | p@chr5:123465978..123465989, - |
| 2.25e-65 | FFCP PHASE1:Mm9::chr5:123465978..123465989,-#_fca3ff5343d0480ea74e60b6096e6f40 | p@chr5:123465978..123465989, - |
| 2.25e-65 | FFCP PHASE1:Mm9::chr15:80403104..80403111,+#_fca3ff5343d0480ea74e60b6096e6f40 | p10@Grap2 |
| 2.25e-65 | FFCP PHASE1:Mm9::chr1:140069290..140069308,+#_fca3ff5343d0480ea74e60b6096e6f40 | p@chr1:140069290..140069308, + |
| 2.9e-65 | FFCP PHASE2:Mm9::chr11:46200242..46200255,+#_b6f83c645f3ed464bd5a52ff2e4cfdf9 | p@chr11:46200242..46200255, + |
| 2.9e-65 | FFCP PHASE2:Mm9::chr14:54817583..54817593,-#_b6f83c645f3ed464bd5a52ff2e4cfdf9 | p@chr14:54817583..54817593, - |
| 2.9e-65 | FFCP PHASE1:Mm9::chr11:46200242..46200255,+#_b6f83c645f3ed464bd5a52ff2e4cfdf9 | p@chr11:46200242..46200255, + |
| 2.9e-65 | FFCP PHASE1:Mm9::chr14:54817583..54817593,-#_b6f83c645f3ed464bd5a52ff2e4cfdf9 | p@chr14:54817583..54817593, - |
| 2.9e-65 | FFCP PHASE1:Mm9::chr6:41504409..41504422,-#_b6f83c645f3ed464bd5a52ff2e4cfdf9 | p@chr6:41504409..41504422, - |
| 2.9e-65 | FFCP PHASE2:Mm9::chr6:41504409..41504422,-#_b6f83c645f3ed464bd5a52ff2e4cfdf9 | p@chr6:41504409..41504422, - |
| 3.74e-65 | FFCP PHASE2:Mm9::chr4:32328217..32328228,-#_2ed236a925482c8ba8f6bc611fe4daf2 | p@chr4:32328217..32328228, - |
| 3.74e-65 | FFCP PHASE1:Mm9::chr4:32328217..32328228,-#_2ed236a925482c8ba8f6bc611fe4daf2 | p@chr4:32328217..32328228, - |
| 6.21e-65 | FFCP PHASE2:Mm9::chr11:46200110..46200124,-#_880fdaf57160532714bf01e116816c8c | p@chr11:46200110..46200124, - |
| 6.21e-65 | FFCP PHASE1:Mm9::chr5:123465955..123465966,-#_880fdaf57160532714bf01e116816c8c | p@chr5:123465955..123465966, - |
| 6.21e-65 | FFCP PHASE1:Mm9::chr13:105412781..105412798,+#_880fdaf57160532714bf01e116816c8c | p@chr13:105412781..105412798, + |
| 6.21e-65 | FFCP PHASE2:Mm9::chr5:123465955..123465966,-#_880fdaf57160532714bf01e116816c8c | p@chr5:123465955..123465966, - |
| 6.21e-65 | FFCP PHASE1:Mm9::chr11:46200110..46200124,-#_880fdaf57160532714bf01e116816c8c | p@chr11:46200110..46200124, - |
| 6.21e-65 | FFCP PHASE2:Mm9::chr13:105412781..105412798,+#_880fdaf57160532714bf01e116816c8c | p@chr13:105412781..105412798, + |
| 1.0e-60 | FFCP PHASE1:Mm9::chr2:11097490..11097500,+#_73ed6a76eecb8ff1e346e3368bca33de | p@chr2:11097490..11097500, + |
| 1.0e-60 | FFCP PHASE2:Mm9::chr2:11097490..11097500,+#_73ed6a76eecb8ff1e346e3368bca33de | p@chr2:11097490..11097500, + |
| 1.33e-60 | FFCP PHASE2:Mm9::chr7:150943007..150943022,+#_903c4cfa9568c292b2f6400bab9dc9e5 | p@chr7:150943007..150943022, + |
| 1.33e-60 | FFCP PHASE2:Mm9::chr5:108160486..108160515,-#_903c4cfa9568c292b2f6400bab9dc9e5 | p@chr5:108160486..108160515, - |
| 1.33e-60 | FFCP PHASE1:Mm9::chr12:70398221..70398232,-#_903c4cfa9568c292b2f6400bab9dc9e5 | p@chr12:70398221..70398232, - |
| 1.33e-60 | FFCP PHASE2:Mm9::chr12:70398221..70398232,-#_903c4cfa9568c292b2f6400bab9dc9e5 | p@chr12:70398221..70398232, - |
| 1.33e-60 | FFCP PHASE1:Mm9::chr7:150943007..150943022,+#_903c4cfa9568c292b2f6400bab9dc9e5 | p@chr7:150943007..150943022, + |
| 1.33e-60 | FFCP PHASE1:Mm9::chr10:128157769..128157772,-#_903c4cfa9568c292b2f6400bab9dc9e5 | p@chr10:128157769..128157772, - |
| 1.33e-60 | FFCP PHASE1:Mm9::chr5:108160486..108160515,-#_903c4cfa9568c292b2f6400bab9dc9e5 | p@chr5:108160486..108160515, - |
| 1.33e-60 | FFCP PHASE2:Mm9::chr10:128157769..128157772,-#_903c4cfa9568c292b2f6400bab9dc9e5 | p@chr10:128157769..128157772, - |
| 1.77e-60 | FFCP PHASE1:Mm9::chr14:53414758..53414769,+#_a1fcf65d83d447385839a18373ec4976 | p1@ENSMUST00000103582 |
| 1.77e-60 | FFCP PHASE2:Mm9::chr14:53414758..53414769,+#_a1fcf65d83d447385839a18373ec4976 | p1@ENSMUST00000103582 |
| 2.34e-60 | FFCP PHASE2:Mm9::chr2:73290853..73290866,+#_c12dd5dc7f0874a0c2d3f21568f13981 | p@chr2:73290853..73290866, + |
| 2.34e-60 | FFCP PHASE1:Mm9::chr2:73290853..73290866,+#_c12dd5dc7f0874a0c2d3f21568f13981 | p@chr2:73290853..73290866, + |
| 4.1e-60 | FFCP PHASE1:Mm9::chr1:138476217..138476228,+#_e0d96801021be733a0165d0a127ce642 | p@chr1:138476217..138476228, + |
| 4.1e-60 | FFCP PHASE1:Mm9::chr9:14708434..14708444,-#_e0d96801021be733a0165d0a127ce642 | p8@Folr4 |
| 4.1e-60 | FFCP PHASE1:Mm9::chr2:11181142..11181148,-#_e0d96801021be733a0165d0a127ce642 | p@chr2:11181142..11181148, - |
| 4.1e-60 | FFCP PHASE2:Mm9::chr9:14708434..14708444,-#_e0d96801021be733a0165d0a127ce642 | p8@Folr4 |
| 4.1e-60 | FFCP PHASE2:Mm9::chr2:11181142..11181148,-#_e0d96801021be733a0165d0a127ce642 | p@chr2:11181142..11181148, - |
| 4.1e-60 | FFCP PHASE2:Mm9::chr1:138476217..138476228,+#_e0d96801021be733a0165d0a127ce642 | p@chr1:138476217..138476228, + |
| 6.68e-60 | FFCP PHASE1:Hg19::chr13:40765017..40765053,-#_53410b305f867886d7adfec7e6441c55 | p@chr13:40765017..40765053, - |
| 6.68e-60 | FFCP PHASE2:Hg19::chr13:40765017..40765053,-#_53410b305f867886d7adfec7e6441c55 | p@chr13:40765017..40765053, - |
| 8.17e-60 | FFCP PHASE2:Hg19::chr1:118201616..118201641,+#_38d88d3f3906b50debc4125b89b0f296 | p@chr1:118201616..118201641, + |
| 8.17e-60 | FFCP PHASE1:Hg19::chr1:118201616..118201641,+#_38d88d3f3906b50debc4125b89b0f296 | p@chr1:118201616..118201641, + |
| 6.9e-59 | FFCP PHASE1:Mm9::chr11:87558695..87558707,+#_f25b2cf476009afcc04e46b8a6917950 | p@chr11:87558695..87558707, + |
| 6.9e-59 | FFCP PHASE2:Mm9::chrX:54465221..54465232,+#_f25b2cf476009afcc04e46b8a6917950 | p4@Cd40lg |
| 6.9e-59 | FFCP PHASE1:Mm9::chrX:54477240..54477286,+#_f25b2cf476009afcc04e46b8a6917950 | p@chrX:54477240..54477286, + |
| 6.9e-59 | FFCP PHASE1:Mm9::chrX:54465221..54465232,+#_f25b2cf476009afcc04e46b8a6917950 | p4@Cd40lg |
| 6.9e-59 | FFCP PHASE2:Mm9::chr11:87558695..87558707,+#_f25b2cf476009afcc04e46b8a6917950 | p@chr11:87558695..87558707, + |
| 6.9e-59 | FFCP PHASE2:Mm9::chrX:54477240..54477286,+#_f25b2cf476009afcc04e46b8a6917950 | p@chrX:54477240..54477286, + |
