Personal tools

CL:0000817: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
{{CL
{{CL
|id=CL:0000817
|alt_id=
|name=precursor B cell
|namespace=cell;;efo
|def="A precursor B cell is a B cell with the phenotype CD10-positive." [GO_REF:0000031, GOC:rhs, GOC:tfm]
|xref=BTO:0001133
|is_a=CL:0000236
|synonym="pre-B cell" EXACT []
|comment=
|comment=
|alt_id=
|disjoint_from=CL:0000826
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A precursor B cell is a B cell with the phenotype CD10-positive." [GO_REF:0000031, GOC:rhs, GOC:tfm]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=CL:0000826
|has_quality=
|has_quality=
|id=CL:0000817
|is_a=CL:0000236
|is_obsolete=
|located_in=
|located_in=
|name=precursor B cell
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="pre-B cell" EXACT []
|union_of=
|xref=BTO:0001133
}}
}}

Latest revision as of 16:37, 12 September 2014

Name:precursor B cell
Namespace:FANTOM
Definition:"A precursor B cell is a B cell with the phenotype CD10-positive." [GO_REF:0000031, GOC:rhs, GOC:tfm]
Xrefs:
links:
BTO:0001133
Synonyms: "pre-B cell" EXACT []


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000236(B cell)
disjoint_from:CL:0000826(pro-B cell)



Children


is a:CL:0000816 (immature B cell),CL:0000955 (pre-B-II cell)
disjoint from:CL:0000785 (mature B cell)
derives from:FF:0100603 (pre-B acute lymphoblastic leukemia cell line sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

  • 10534-107G3 (acute lymphoblastic leukemia (B-ALL) cell line:NALM-6)

Mouse (Mus musculus)

  • 10534-107G3 (acute lymphoblastic leukemia (B-ALL) cell line:NALM-6)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000817 (precursor B cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
8.98e-131FFCP PHASE2:Hg19::chr9:37327716..37327725,+#_eae8735d254daa77b641f1a87ea39066p12@ZCCHC7
8.98e-131FFCP PHASE1:Hg19::chr9:37327677..37327701,+#_eae8735d254daa77b641f1a87ea39066p9@ZCCHC7
8.98e-131FFCP PHASE2:Hg19::chr7:47225953..47225964,-#_eae8735d254daa77b641f1a87ea39066p@chr7:47225953..47225964, -
8.98e-131FFCP PHASE2:Hg19::chr2:54855884..54855893,+#_eae8735d254daa77b641f1a87ea39066p@chr2:54855884..54855893, +
8.98e-131FFCP PHASE1:Hg19::chr9:37327716..37327725,+#_eae8735d254daa77b641f1a87ea39066p12@ZCCHC7
8.98e-131FFCP PHASE2:Hg19::chr7:47225965..47225970,-#_eae8735d254daa77b641f1a87ea39066p@chr7:47225965..47225970, -
8.98e-131FFCP PHASE1:Hg19::chr7:47225953..47225964,-#_eae8735d254daa77b641f1a87ea39066p@chr7:47225953..47225964, -
8.98e-131FFCP PHASE1:Hg19::chr2:54855884..54855893,+#_eae8735d254daa77b641f1a87ea39066p@chr2:54855884..54855893, +
8.98e-131FFCP PHASE1:Hg19::chr7:47225965..47225970,-#_eae8735d254daa77b641f1a87ea39066p@chr7:47225965..47225970, -
8.98e-131FFCP PHASE2:Hg19::chr9:37327677..37327701,+#_eae8735d254daa77b641f1a87ea39066p9@ZCCHC7
6.24e-88FFCP PHASE2:Hg19::chrX:42815602..42815616,-#_b964d6ec0e61ff343c425d2be638de9cp@chrX:42815602..42815616, -
6.24e-88FFCP PHASE1:Hg19::chrX:42815602..42815616,-#_b964d6ec0e61ff343c425d2be638de9cp@chrX:42815602..42815616, -
1.52e-87FFCP PHASE2:Hg19::chr4:144312629..144312638,+#_1191a5d88af5662268f8290275fc8e44p30@GAB1
1.52e-87FFCP PHASE1:Hg19::chr4:144312629..144312638,+#_1191a5d88af5662268f8290275fc8e44p30@GAB1
1.29e-74FFCP PHASE2:Hg19::chr20:52346373..52346376,-#_fa2402e8b88e04fd16200331125eb6d5p@chr20:52346373..52346376, -
1.29e-74FFCP PHASE1:Hg19::chr20:52346373..52346376,-#_fa2402e8b88e04fd16200331125eb6d5p@chr20:52346373..52346376, -
5.84e-74FFCP PHASE2:Hg19::chr20:45891250..45891274,-#_7324083e888d09b59917b2f4f2500114p32@ZMYND8
5.84e-74FFCP PHASE1:Hg19::chr20:45891250..45891274,-#_7324083e888d09b59917b2f4f2500114p32@ZMYND8
7.51e-74FFCP PHASE1:Hg19::chr12:49555310..49555317,+#_0b89b710d65656916caa1ee8810a1626p@chr12:49555310..49555317, +
7.51e-74FFCP PHASE2:Hg19::chr12:49555310..49555317,+#_0b89b710d65656916caa1ee8810a1626p@chr12:49555310..49555317, +
2.39e-66FFCP PHASE2:Hg19::chr2:77746775..77746779,-#_30e281f8e698990a741f9f7b0d8cc8abp14@LRRTM4
2.39e-66FFCP PHASE1:Hg19::chr22:23234780..23234786,+#_30e281f8e698990a741f9f7b0d8cc8abp@chr22:23234780..23234786, +
2.39e-66FFCP PHASE2:Hg19::chr15:66464730..66464736,-#_30e281f8e698990a741f9f7b0d8cc8abp@chr15:66464730..66464736, -
2.39e-66FFCP PHASE2:Hg19::chr20:58045621..58045634,+#_30e281f8e698990a741f9f7b0d8cc8abp@chr20:58045621..58045634, +
2.39e-66FFCP PHASE1:Hg19::chr4:8046897..8046900,+#_30e281f8e698990a741f9f7b0d8cc8abp@chr4:8046897..8046900, +
2.39e-66FFCP PHASE1:Hg19::chr2:77746703..77746711,-#_30e281f8e698990a741f9f7b0d8cc8abp9@LRRTM4
2.39e-66FFCP PHASE2:Hg19::chr21:20752617..20752622,-#_30e281f8e698990a741f9f7b0d8cc8abp@chr21:20752617..20752622, -
2.39e-66FFCP PHASE1:Hg19::chr12:8808206..8808209,-#_30e281f8e698990a741f9f7b0d8cc8abp@chr12:8808206..8808209, -
2.39e-66FFCP PHASE2:Hg19::chrX:42727038..42727047,-#_30e281f8e698990a741f9f7b0d8cc8abp@chrX:42727038..42727047, -
2.39e-66FFCP PHASE1:Hg19::chr12:40953942..40953946,+#_30e281f8e698990a741f9f7b0d8cc8abp@chr12:40953942..40953946, +
2.39e-66FFCP PHASE1:Hg19::chr10:1609627..1609637,+#_30e281f8e698990a741f9f7b0d8cc8abp@chr10:1609627..1609637, +
2.39e-66FFCP PHASE2:Hg19::chr14:53594794..53594799,+#_30e281f8e698990a741f9f7b0d8cc8abp@chr14:53594794..53594799, +
2.39e-66FFCP PHASE2:Hg19::chr6:166581590..166581596,+#_30e281f8e698990a741f9f7b0d8cc8abp@chr6:166581590..166581596, +
2.39e-66FFCP PHASE2:Hg19::chr1:156314455..156314464,+#_30e281f8e698990a741f9f7b0d8cc8abp@chr1:156314455..156314464, +
2.39e-66FFCP PHASE2:Hg19::chr3:6686484..6686491,+#_30e281f8e698990a741f9f7b0d8cc8abp@chr3:6686484..6686491, +
2.39e-66FFCP PHASE1:Hg19::chr11:26124040..26124064,-#_30e281f8e698990a741f9f7b0d8cc8abp@chr11:26124040..26124064, -
2.39e-66FFCP PHASE2:Hg19::chr2:77581116..77581120,-#_30e281f8e698990a741f9f7b0d8cc8abp@chr2:77581116..77581120, -
2.39e-66FFCP PHASE1:Hg19::chr10:97802785..97802826,+#_30e281f8e698990a741f9f7b0d8cc8abp5@CCNJ
2.39e-66FFCP PHASE1:Hg19::chr22:23213535..23213539,+#_30e281f8e698990a741f9f7b0d8cc8abp4@IGLV4-3
2.39e-66FFCP PHASE1:Hg19::chr7:86415255..86415288,+#_30e281f8e698990a741f9f7b0d8cc8abp@chr7:86415255..86415288, +
2.39e-66FFCP PHASE2:Hg19::chr10:56410468..56410499,-#_30e281f8e698990a741f9f7b0d8cc8abp@chr10:56410468..56410499, -
2.39e-66FFCP PHASE1:Hg19::chr3:168337915..168337930,-#_30e281f8e698990a741f9f7b0d8cc8abp@chr3:168337915..168337930, -
2.39e-66FFCP PHASE1:Hg19::chr1:101853882..101853891,-#_30e281f8e698990a741f9f7b0d8cc8abp@chr1:101853882..101853891, -
2.39e-66FFCP PHASE1:Hg19::chr21:20752389..20752420,-#_30e281f8e698990a741f9f7b0d8cc8abp@chr21:20752389..20752420, -
2.39e-66FFCP PHASE1:Hg19::chr6:166581583..166581586,+#_30e281f8e698990a741f9f7b0d8cc8abp@chr6:166581583..166581586, +
2.39e-66FFCP PHASE1:Hg19::chr14:53594794..53594799,+#_30e281f8e698990a741f9f7b0d8cc8abp@chr14:53594794..53594799, +
2.39e-66FFCP PHASE2:Hg19::chr5:88646759..88646764,+#_30e281f8e698990a741f9f7b0d8cc8abp@chr5:88646759..88646764, +
2.39e-66FFCP PHASE1:Hg19::chr5:157336889..157336907,+#_30e281f8e698990a741f9f7b0d8cc8abp@chr5:157336889..157336907, +
2.39e-66FFCP PHASE1:Hg19::chr4:146411403..146411429,+#_30e281f8e698990a741f9f7b0d8cc8abp@chr4:146411403..146411429, +
2.39e-66FFCP PHASE2:Hg19::chr5:157816902..157816905,-#_30e281f8e698990a741f9f7b0d8cc8abp@chr5:157816902..157816905, -
2.39e-66FFCP PHASE2:Hg19::chr22:48976727..48976745,+#_30e281f8e698990a741f9f7b0d8cc8abp@chr22:48976727..48976745, +
2.39e-66FFCP PHASE1:Hg19::chrY:14649728..14649734,+#_30e281f8e698990a741f9f7b0d8cc8abp5@SHROOM2P1
2.39e-66FFCP PHASE2:Hg19::chr3:19436672..19436686,+#_30e281f8e698990a741f9f7b0d8cc8abp@chr3:19436672..19436686, +
2.39e-66FFCP PHASE1:Hg19::chr6:39962337..39962342,+#_30e281f8e698990a741f9f7b0d8cc8abp@chr6:39962337..39962342, +
2.39e-66FFCP PHASE2:Hg19::chr22:22599175..22599177,+#_30e281f8e698990a741f9f7b0d8cc8abp4@VPREB1
2.39e-66FFCP PHASE2:Hg19::chr3:126941733..126941746,+#_30e281f8e698990a741f9f7b0d8cc8abp@chr3:126941733..126941746, +
2.39e-66FFCP PHASE1:Hg19::chr21:20867728..20867731,-#_30e281f8e698990a741f9f7b0d8cc8abp@chr21:20867728..20867731, -
2.39e-66FFCP PHASE2:Hg19::chrX:154028053..154028060,-#_30e281f8e698990a741f9f7b0d8cc8abp21@MPP1
2.39e-66FFCP PHASE2:Hg19::chr20:58045652..58045658,+#_30e281f8e698990a741f9f7b0d8cc8abp@chr20:58045652..58045658, +
2.39e-66FFCP PHASE2:Hg19::chr6:164466325..164466331,+#_30e281f8e698990a741f9f7b0d8cc8abp@chr6:164466325..164466331, +
2.39e-66FFCP PHASE2:Hg19::chr12:122462770..122462775,+#_30e281f8e698990a741f9f7b0d8cc8abp@chr12:122462770..122462775, +
2.39e-66FFCP PHASE1:Hg19::chr4:8046990..8046993,-#_30e281f8e698990a741f9f7b0d8cc8abp@chr4:8046990..8046993, -
2.39e-66FFCP PHASE1:Hg19::chr22:22599075..22599079,+#_30e281f8e698990a741f9f7b0d8cc8abp6@VPREB1
2.39e-66FFCP PHASE1:Hg19::chr5:114291872..114291873,+#_30e281f8e698990a741f9f7b0d8cc8abp@chr5:114291872..114291873, +
2.39e-66FFCP PHASE1:Hg19::chr2:77746775..77746779,-#_30e281f8e698990a741f9f7b0d8cc8abp14@LRRTM4
2.39e-66FFCP PHASE2:Hg19::chr11:26122006..26122011,-#_30e281f8e698990a741f9f7b0d8cc8abp@chr11:26122006..26122011, -
2.39e-66FFCP PHASE2:Hg19::chr22:23214117..23214120,+#_30e281f8e698990a741f9f7b0d8cc8abp3@AM184012, p3@AM184013, p3@AM184014, p3@AM184015
2.39e-66FFCP PHASE2:Hg19::chr12:4313331..4313334,+#_30e281f8e698990a741f9f7b0d8cc8abp@chr12:4313331..4313334, +
2.39e-66FFCP PHASE2:Hg19::chr1:205827116..205827123,+#_30e281f8e698990a741f9f7b0d8cc8abp@chr1:205827116..205827123, +
2.39e-66FFCP PHASE1:Hg19::chr10:1610285..1610290,+#_30e281f8e698990a741f9f7b0d8cc8abp@chr10:1610285..1610290, +
2.39e-66FFCP PHASE2:Hg19::chr11:130424330..130424335,+#_30e281f8e698990a741f9f7b0d8cc8abp@chr11:130424330..130424335, +
2.39e-66FFCP PHASE2:Hg19::chr2:18730657..18730670,+#_30e281f8e698990a741f9f7b0d8cc8abp@chr2:18730657..18730670, +
2.39e-66FFCP PHASE1:Hg19::chr20:58045621..58045634,+#_30e281f8e698990a741f9f7b0d8cc8abp@chr20:58045621..58045634, +
2.39e-66FFCP PHASE2:Hg19::chr14:106829914..106829921,-#_30e281f8e698990a741f9f7b0d8cc8abp1@HM996258, p1@HM996415, p1@HM996438
2.39e-66FFCP PHASE2:Hg19::chr3:158747347..158747353,+#_30e281f8e698990a741f9f7b0d8cc8abp@chr3:158747347..158747353, +
2.39e-66FFCP PHASE1:Hg19::chr21:20752617..20752622,-#_30e281f8e698990a741f9f7b0d8cc8abp@chr21:20752617..20752622, -
2.39e-66FFCP PHASE1:Hg19::chrX:42727038..42727047,-#_30e281f8e698990a741f9f7b0d8cc8abp@chrX:42727038..42727047, -
2.39e-66FFCP PHASE1:Hg19::chr13:114062339..114062349,-#_30e281f8e698990a741f9f7b0d8cc8abp@chr13:114062339..114062349, -
2.39e-66FFCP PHASE2:Hg19::chr1:17349613..17349631,-#_30e281f8e698990a741f9f7b0d8cc8abp8@SDHB
2.39e-66FFCP PHASE1:Hg19::chr12:4313331..4313334,+#_30e281f8e698990a741f9f7b0d8cc8abp@chr12:4313331..4313334, +
2.39e-66FFCP PHASE1:Hg19::chr6:166581590..166581596,+#_30e281f8e698990a741f9f7b0d8cc8abp@chr6:166581590..166581596, +
2.39e-66FFCP PHASE1:Hg19::chr1:156314455..156314464,+#_30e281f8e698990a741f9f7b0d8cc8abp@chr1:156314455..156314464, +
2.39e-66FFCP PHASE2:Hg19::chr3:175229206..175229218,+#_30e281f8e698990a741f9f7b0d8cc8abp@chr3:175229206..175229218, +
2.39e-66FFCP PHASE1:Hg19::chr3:6686484..6686491,+#_30e281f8e698990a741f9f7b0d8cc8abp@chr3:6686484..6686491, +
2.39e-66FFCP PHASE2:Hg19::chr4:176353908..176353917,-#_30e281f8e698990a741f9f7b0d8cc8abp@chr4:176353908..176353917, -
2.39e-66FFCP PHASE2:Hg19::chr7:2109002..2109005,-#_30e281f8e698990a741f9f7b0d8cc8abp@chr7:2109002..2109005, -
2.39e-66FFCP PHASE1:Hg19::chr12:122458855..122458857,+#_30e281f8e698990a741f9f7b0d8cc8abp16@BCL7A
2.39e-66FFCP PHASE2:Hg19::chr3:79363599..79363606,+#_30e281f8e698990a741f9f7b0d8cc8abp@chr3:79363599..79363606, +
2.39e-66FFCP PHASE1:Hg19::chr2:77581116..77581120,-#_30e281f8e698990a741f9f7b0d8cc8abp@chr2:77581116..77581120, -
2.39e-66FFCP PHASE1:Hg19::chr5:88646759..88646764,+#_30e281f8e698990a741f9f7b0d8cc8abp@chr5:88646759..88646764, +
2.39e-66FFCP PHASE1:Hg19::chr12:117256221..117256231,+#_30e281f8e698990a741f9f7b0d8cc8abp@chr12:117256221..117256231, +
2.39e-66FFCP PHASE1:Hg19::chr3:19436672..19436686,+#_30e281f8e698990a741f9f7b0d8cc8abp@chr3:19436672..19436686, +
2.39e-66FFCP PHASE2:Hg19::chr6:164466345..164466352,+#_30e281f8e698990a741f9f7b0d8cc8abp@chr6:164466345..164466352, +
2.39e-66FFCP PHASE2:Hg19::chr3:178947187..178947192,+#_30e281f8e698990a741f9f7b0d8cc8abp@chr3:178947187..178947192, +
2.39e-66FFCP PHASE1:Hg19::chr22:22599175..22599177,+#_30e281f8e698990a741f9f7b0d8cc8abp4@VPREB1
2.39e-66FFCP PHASE2:Hg19::chr4:3881462..3881469,-#_30e281f8e698990a741f9f7b0d8cc8abp@chr4:3881462..3881469, -
2.39e-66FFCP PHASE2:Hg19::chrX:89012355..89012363,+#_30e281f8e698990a741f9f7b0d8cc8abp@chrX:89012355..89012363, +
2.39e-66FFCP PHASE1:Hg19::chr5:157816902..157816905,-#_30e281f8e698990a741f9f7b0d8cc8abp@chr5:157816902..157816905, -
2.39e-66FFCP PHASE1:Hg19::chr22:48976727..48976745,+#_30e281f8e698990a741f9f7b0d8cc8abp@chr22:48976727..48976745, +
2.39e-66FFCP PHASE1:Hg19::chr15:53828219..53828224,-#_30e281f8e698990a741f9f7b0d8cc8abp@chr15:53828219..53828224, -

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=CL:0000817&oldid=3275359"