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{{CL
{{CL
|id=CL:0000809
|alt_id=
|name=double-positive, alpha-beta thymocyte
|namespace=efo
|def="A thymocyte expressing the alpha-beta T cell receptor complex as well as both the CD4 and CD8 coreceptors." [GO_REF:0000031, GOC:add, GOC:tfm, ISBN:0781735149]
|xref=
|is_a=CL:0000790;;CL:0000893
|synonym="double-positive, alpha-beta immature T lymphocyte" EXACT [];;"DP cell" EXACT [];;"DP thymocyte" EXACT []
|comment=Thymocytes of this stage are undergoing positive and negative selection.
|comment=Thymocytes of this stage are undergoing positive and negative selection.
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A thymocyte expressing the alpha-beta T cell receptor complex as well as both the CD4 and CD8 coreceptors." [GO_REF:0000031, GOC:add, GOC:tfm, ISBN:0781735149]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=CL:0000805
|develops_from=CL:0000805
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0000809
|is_a=CL:0000790 ;;CL:0000893
|is_obsolete=
|located_in=
|located_in=
|name=double-positive, alpha-beta thymocyte
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0002370
|part_of=UBERON:0002370
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.obo.owl
|is_obsolete=
|preceded_by=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|subset=
|synonym="double-positive, alpha-beta immature T lymphocyte" EXACT [];;"DP cell" EXACT [];;"DP thymocyte" EXACT []
|union_of=
|xref=
}}
}}

Latest revision as of 16:37, 12 September 2014

Name:double-positive, alpha-beta thymocyte
Namespace:FANTOM
Definition:"A thymocyte expressing the alpha-beta T cell receptor complex as well as both the CD4 and CD8 coreceptors." [GO_REF:0000031, GOC:add, GOC:tfm, ISBN:0781735149]
Synonyms: "double-positive, alpha-beta immature T lymphocyte" EXACT []
"DP cell" EXACT []
"DP thymocyte" EXACT []
Comments:Thymocytes of this stage are undergoing positive and negative selection.


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000790(immature alpha-beta T cell),CL:0000893(thymocyte)
develops_from:CL:0000805(immature single positive thymocyte)
part_of:UBERON:0002370(thymus)



Children


is a:CL:0002427 (resting double-positive thymocyte),CL:0002428 (double-positive blast),CL:0002429 (CD69-positive double-positive thymocyte),CL:0002431 (CD4-positive, CD8-intermediate double-positive thymocyte)
develops from:CL:0000810 (CD4-positive, alpha-beta thymocyte),CL:0000914 (immature NK T cell),CL:0002039 (immature NK T cell stage I)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.



Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000809 (double-positive, alpha-beta thymocyte), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.29e-195FFCP PHASE1:Hg19::chr2:162762361..162762364,+#_484cda2b6815eed9d8af1e737eba2e48p@chr2:162762361..162762364, +
3.29e-195FFCP PHASE2:Hg19::chr2:162762361..162762364,+#_484cda2b6815eed9d8af1e737eba2e48p@chr2:162762361..162762364, +
1.55e-98FFCP PHASE1:Hg19::chr4:175842470..175842486,-#_436f6b1d0291644c9de12c89649651a9p@chr4:175842470..175842486, -
1.55e-98FFCP PHASE2:Hg19::chr2:146687090..146687095,+#_436f6b1d0291644c9de12c89649651a9p@chr2:146687090..146687095, +
1.55e-98FFCP PHASE1:Hg19::chr2:141989111..141989114,-#_436f6b1d0291644c9de12c89649651a9p@chr2:141989111..141989114, -
1.55e-98FFCP PHASE1:Hg19::chr1:237900222..237900230,+#_436f6b1d0291644c9de12c89649651a9p@chr1:237900222..237900230, +
1.55e-98FFCP PHASE1:Hg19::chr14:22962827..22962830,+#_436f6b1d0291644c9de12c89649651a9p3@uc001weo.2
1.55e-98FFCP PHASE2:Hg19::chr8:16739475..16739490,-#_436f6b1d0291644c9de12c89649651a9p@chr8:16739475..16739490, -
1.55e-98FFCP PHASE1:Hg19::chr5:24272119..24272147,-#_436f6b1d0291644c9de12c89649651a9p@chr5:24272119..24272147, -
1.55e-98FFCP PHASE2:Hg19::chr4:134707449..134707458,-#_436f6b1d0291644c9de12c89649651a9p@chr4:134707449..134707458, -
1.55e-98FFCP PHASE1:Hg19::chr15:92006720..92006726,+#_436f6b1d0291644c9de12c89649651a9p1@uc002bqw.2
1.55e-98FFCP PHASE2:Hg19::chr8:114877856..114877881,-#_436f6b1d0291644c9de12c89649651a9p@chr8:114877856..114877881, -
1.55e-98FFCP PHASE1:Hg19::chr4:2428062..2428080,+#_436f6b1d0291644c9de12c89649651a9p1@uc003gfa.1
1.55e-98FFCP PHASE2:Hg19::chr4:128884938..128884941,-#_436f6b1d0291644c9de12c89649651a9p@chr4:128884938..128884941, -
1.55e-98FFCP PHASE1:Hg19::chr8:50081052..50081075,-#_436f6b1d0291644c9de12c89649651a9p@chr8:50081052..50081075, -
1.55e-98FFCP PHASE1:Hg19::chr4:176123823..176123829,+#_436f6b1d0291644c9de12c89649651a9p@chr4:176123823..176123829, +
1.55e-98FFCP PHASE1:Hg19::chr8:114877856..114877881,-#_436f6b1d0291644c9de12c89649651a9p@chr8:114877856..114877881, -
1.55e-98FFCP PHASE1:Hg19::chr2:146998057..146998070,-#_436f6b1d0291644c9de12c89649651a9p@chr2:146998057..146998070, -
1.55e-98FFCP PHASE1:Hg19::chr4:134707474..134707504,-#_436f6b1d0291644c9de12c89649651a9p@chr4:134707474..134707504, -
1.55e-98FFCP PHASE1:Hg19::chr7:117926347..117926353,-#_436f6b1d0291644c9de12c89649651a9p@chr7:117926347..117926353, -
1.55e-98FFCP PHASE1:Hg19::chr1:189141918..189141929,+#_436f6b1d0291644c9de12c89649651a9p@chr1:189141918..189141929, +
1.55e-98FFCP PHASE2:Hg19::chr2:141989111..141989114,-#_436f6b1d0291644c9de12c89649651a9p@chr2:141989111..141989114, -
1.55e-98FFCP PHASE2:Hg19::chr4:175842470..175842486,-#_436f6b1d0291644c9de12c89649651a9p@chr4:175842470..175842486, -
1.55e-98FFCP PHASE2:Hg19::chr5:24272119..24272147,-#_436f6b1d0291644c9de12c89649651a9p@chr5:24272119..24272147, -
1.55e-98FFCP PHASE1:Hg19::chr9:72117884..72117889,-#_436f6b1d0291644c9de12c89649651a9p@chr9:72117884..72117889, -
1.55e-98FFCP PHASE1:Hg19::chr4:133657589..133657598,-#_436f6b1d0291644c9de12c89649651a9p@chr4:133657589..133657598, -
1.55e-98FFCP PHASE2:Hg19::chr4:2428062..2428080,+#_436f6b1d0291644c9de12c89649651a9p1@uc003gfa.1
1.55e-98FFCP PHASE2:Hg19::chr3:192598433..192598481,-#_436f6b1d0291644c9de12c89649651a9p@chr3:192598433..192598481, -
1.55e-98FFCP PHASE1:Hg19::chr22:46041912..46041915,+#_436f6b1d0291644c9de12c89649651a9p@chr22:46041912..46041915, +
1.55e-98FFCP PHASE1:Hg19::chr17:14101134..14101143,+#_436f6b1d0291644c9de12c89649651a9p@chr17:14101134..14101143, +
1.55e-98FFCP PHASE2:Hg19::chr8:50081052..50081075,-#_436f6b1d0291644c9de12c89649651a9p@chr8:50081052..50081075, -
1.55e-98FFCP PHASE2:Hg19::chr13:24623546..24623587,-#_436f6b1d0291644c9de12c89649651a9p@chr13:24623546..24623587, -
1.55e-98FFCP PHASE1:Hg19::chr4:175842511..175842520,-#_436f6b1d0291644c9de12c89649651a9p@chr4:175842511..175842520, -
1.55e-98FFCP PHASE1:Hg19::chr3:192598433..192598481,-#_436f6b1d0291644c9de12c89649651a9p@chr3:192598433..192598481, -
1.55e-98FFCP PHASE2:Hg19::chr2:146998057..146998070,-#_436f6b1d0291644c9de12c89649651a9p@chr2:146998057..146998070, -
1.55e-98FFCP PHASE2:Hg19::chrX:133321044..133321049,+#_436f6b1d0291644c9de12c89649651a9p@chrX:133321044..133321049, +
1.55e-98FFCP PHASE2:Hg19::chr4:176123823..176123829,+#_436f6b1d0291644c9de12c89649651a9p@chr4:176123823..176123829, +
1.55e-98FFCP PHASE2:Hg19::chr7:117926347..117926353,-#_436f6b1d0291644c9de12c89649651a9p@chr7:117926347..117926353, -
1.55e-98FFCP PHASE1:Hg19::chr21:43982135..43982142,+#_436f6b1d0291644c9de12c89649651a9p@chr21:43982135..43982142, +
1.55e-98FFCP PHASE1:Hg19::chr13:24623546..24623587,-#_436f6b1d0291644c9de12c89649651a9p@chr13:24623546..24623587, -
1.55e-98FFCP PHASE2:Hg19::chr4:134707474..134707504,-#_436f6b1d0291644c9de12c89649651a9p@chr4:134707474..134707504, -
1.55e-98FFCP PHASE1:Hg19::chrX:133321044..133321049,+#_436f6b1d0291644c9de12c89649651a9p@chrX:133321044..133321049, +
1.55e-98FFCP PHASE2:Hg19::chr9:72117884..72117889,-#_436f6b1d0291644c9de12c89649651a9p@chr9:72117884..72117889, -
1.55e-98FFCP PHASE1:Hg19::chr21:39490932..39490937,+#_436f6b1d0291644c9de12c89649651a9p@chr21:39490932..39490937, +
1.55e-98FFCP PHASE2:Hg19::chr4:133657589..133657598,-#_436f6b1d0291644c9de12c89649651a9p@chr4:133657589..133657598, -
1.55e-98FFCP PHASE1:Hg19::chr4:111448516..111448521,+#_436f6b1d0291644c9de12c89649651a9p@chr4:111448516..111448521, +
1.55e-98FFCP PHASE2:Hg19::chr15:91989101..91989105,+#_436f6b1d0291644c9de12c89649651a9p@chr15:91989101..91989105, +
1.55e-98FFCP PHASE2:Hg19::chr16:67022522..67022529,+#_436f6b1d0291644c9de12c89649651a9p12@CES4A
1.55e-98FFCP PHASE1:Hg19::chr8:67519931..67519935,-#_436f6b1d0291644c9de12c89649651a9p@chr8:67519931..67519935, -
1.55e-98FFCP PHASE2:Hg19::chr13:49078833..49078841,-#_436f6b1d0291644c9de12c89649651a9p@chr13:49078833..49078841, -
1.55e-98FFCP PHASE2:Hg19::chr4:175842511..175842520,-#_436f6b1d0291644c9de12c89649651a9p@chr4:175842511..175842520, -
1.55e-98FFCP PHASE2:Hg19::chr3:152204326..152204345,+#_436f6b1d0291644c9de12c89649651a9p@chr3:152204326..152204345, +
1.55e-98FFCP PHASE1:Hg19::chr3:152204326..152204345,+#_436f6b1d0291644c9de12c89649651a9p@chr3:152204326..152204345, +
1.55e-98FFCP PHASE1:Hg19::chr16:67022368..67022374,-#_436f6b1d0291644c9de12c89649651a9p@chr16:67022368..67022374, -
1.55e-98FFCP PHASE1:Hg19::chr4:133657651..133657654,-#_436f6b1d0291644c9de12c89649651a9p@chr4:133657651..133657654, -
1.55e-98FFCP PHASE1:Hg19::chr15:91989101..91989105,+#_436f6b1d0291644c9de12c89649651a9p@chr15:91989101..91989105, +
1.55e-98FFCP PHASE1:Hg19::chr13:49078833..49078841,-#_436f6b1d0291644c9de12c89649651a9p@chr13:49078833..49078841, -
1.55e-98FFCP PHASE1:Hg19::chr1:200990231..200990238,-#_436f6b1d0291644c9de12c89649651a9p@chr1:200990231..200990238, -
1.55e-98FFCP PHASE1:Hg19::chr17:14103251..14103258,+#_436f6b1d0291644c9de12c89649651a9p@chr17:14103251..14103258, +
1.55e-98FFCP PHASE2:Hg19::chr4:111448516..111448521,+#_436f6b1d0291644c9de12c89649651a9p@chr4:111448516..111448521, +
1.55e-98FFCP PHASE1:Hg19::chr4:105805755..105805761,+#_436f6b1d0291644c9de12c89649651a9p@chr4:105805755..105805761, +
1.55e-98FFCP PHASE2:Hg19::chr21:47278815..47278834,+#_436f6b1d0291644c9de12c89649651a9p6@PCBP3
1.55e-98FFCP PHASE1:Hg19::chr8:75251775..75251785,+#_436f6b1d0291644c9de12c89649651a9p@chr8:75251775..75251785, +
1.55e-98FFCP PHASE1:Hg19::chr4:175842537..175842553,-#_436f6b1d0291644c9de12c89649651a9p@chr4:175842537..175842553, -
1.55e-98FFCP PHASE2:Hg19::chr6:128263833..128263838,-#_436f6b1d0291644c9de12c89649651a9p@chr6:128263833..128263838, -
1.55e-98FFCP PHASE2:Hg19::chr1:189141918..189141929,+#_436f6b1d0291644c9de12c89649651a9p@chr1:189141918..189141929, +
1.55e-98FFCP PHASE1:Hg19::chr10:11846830..11846860,-#_436f6b1d0291644c9de12c89649651a9p@chr10:11846830..11846860, -
1.55e-98FFCP PHASE2:Hg19::chr8:67519931..67519935,-#_436f6b1d0291644c9de12c89649651a9p@chr8:67519931..67519935, -
1.55e-98FFCP PHASE2:Hg19::chr15:69972162..69972169,+#_436f6b1d0291644c9de12c89649651a9p@chr15:69972162..69972169, +
1.55e-98FFCP PHASE1:Hg19::chr6:128263833..128263838,-#_436f6b1d0291644c9de12c89649651a9p@chr6:128263833..128263838, -
1.55e-98FFCP PHASE1:Hg19::chr9:4544914..4544917,-#_436f6b1d0291644c9de12c89649651a9p@chr9:4544914..4544917, -
1.55e-98FFCP PHASE2:Hg19::chr4:133657651..133657654,-#_436f6b1d0291644c9de12c89649651a9p@chr4:133657651..133657654, -
1.55e-98FFCP PHASE2:Hg19::chr1:237900222..237900230,+#_436f6b1d0291644c9de12c89649651a9p@chr1:237900222..237900230, +
1.55e-98FFCP PHASE2:Hg19::chr15:91989133..91989141,+#_436f6b1d0291644c9de12c89649651a9p@chr15:91989133..91989141, +
1.55e-98FFCP PHASE2:Hg19::chr22:46041912..46041915,+#_436f6b1d0291644c9de12c89649651a9p@chr22:46041912..46041915, +
1.55e-98FFCP PHASE2:Hg19::chr10:11846830..11846860,-#_436f6b1d0291644c9de12c89649651a9p@chr10:11846830..11846860, -
1.55e-98FFCP PHASE2:Hg19::chr4:105805755..105805761,+#_436f6b1d0291644c9de12c89649651a9p@chr4:105805755..105805761, +
1.55e-98FFCP PHASE1:Hg19::chr15:69972162..69972169,+#_436f6b1d0291644c9de12c89649651a9p@chr15:69972162..69972169, +
1.55e-98FFCP PHASE2:Hg19::chr8:75251775..75251785,+#_436f6b1d0291644c9de12c89649651a9p@chr8:75251775..75251785, +
1.55e-98FFCP PHASE2:Hg19::chr4:175842537..175842553,-#_436f6b1d0291644c9de12c89649651a9p@chr4:175842537..175842553, -
1.55e-98FFCP PHASE1:Hg19::chr15:91989133..91989141,+#_436f6b1d0291644c9de12c89649651a9p@chr15:91989133..91989141, +
1.55e-98FFCP PHASE2:Hg19::chr9:4544914..4544917,-#_436f6b1d0291644c9de12c89649651a9p@chr9:4544914..4544917, -
1.55e-98FFCP PHASE1:Hg19::chr2:162762231..162762234,+#_436f6b1d0291644c9de12c89649651a9p@chr2:162762231..162762234, +
1.55e-98FFCP PHASE1:Hg19::chr7:38287827..38287832,-#_436f6b1d0291644c9de12c89649651a9p@chr7:38287827..38287832, -
1.55e-98FFCP PHASE1:Hg19::chr4:175858389..175858405,-#_436f6b1d0291644c9de12c89649651a9p@chr4:175858389..175858405, -
1.55e-98FFCP PHASE1:Hg19::chr7:19479837..19479844,+#_436f6b1d0291644c9de12c89649651a9p@chr7:19479837..19479844, +
1.55e-98FFCP PHASE2:Hg19::chr17:14101134..14101143,+#_436f6b1d0291644c9de12c89649651a9p@chr17:14101134..14101143, +
1.55e-98FFCP PHASE1:Hg19::chr9:87797549..87797564,+#_436f6b1d0291644c9de12c89649651a9p@chr9:87797549..87797564, +
1.55e-98FFCP PHASE1:Hg19::chr4:134707420..134707442,-#_436f6b1d0291644c9de12c89649651a9p@chr4:134707420..134707442, -
1.55e-98FFCP PHASE1:Hg19::chr9:116857558..116857566,-#_436f6b1d0291644c9de12c89649651a9p@chr9:116857558..116857566, -
1.55e-98FFCP PHASE1:Hg19::chr8:51970952..51970959,+#_436f6b1d0291644c9de12c89649651a9p@chr8:51970952..51970959, +
1.55e-98FFCP PHASE2:Hg19::chr15:92006659..92006679,+#_436f6b1d0291644c9de12c89649651a9p2@uc002bqw.2
1.55e-98FFCP PHASE2:Hg19::chr2:162762231..162762234,+#_436f6b1d0291644c9de12c89649651a9p@chr2:162762231..162762234, +
1.55e-98FFCP PHASE2:Hg19::chr1:200990231..200990238,-#_436f6b1d0291644c9de12c89649651a9p@chr1:200990231..200990238, -
1.55e-98FFCP PHASE2:Hg19::chr7:38287827..38287832,-#_436f6b1d0291644c9de12c89649651a9p@chr7:38287827..38287832, -
1.55e-98FFCP PHASE2:Hg19::chr21:43982135..43982142,+#_436f6b1d0291644c9de12c89649651a9p@chr21:43982135..43982142, +
1.55e-98FFCP PHASE2:Hg19::chr7:19479837..19479844,+#_436f6b1d0291644c9de12c89649651a9p@chr7:19479837..19479844, +
1.55e-98FFCP PHASE2:Hg19::chr21:39490932..39490937,+#_436f6b1d0291644c9de12c89649651a9p@chr21:39490932..39490937, +
1.55e-98FFCP PHASE1:Hg19::chr2:202521027..202521058,-#_436f6b1d0291644c9de12c89649651a9p@chr2:202521027..202521058, -
1.55e-98FFCP PHASE2:Hg19::chr4:175858389..175858405,-#_436f6b1d0291644c9de12c89649651a9p@chr4:175858389..175858405, -

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