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{{CL
{{CL
|id=CL:0000775
|alt_id=
|name=neutrophil
|namespace=cell
|def="Any of the immature or mature forms of a granular leukocyte that in its mature form has a nucleus with three to five lobes connected by slender threads of chromatin, and cytoplasm containing fine inconspicuous granules and stainable by neutral dyes." [GOC:add, GOC:amm, GOC:tfm, ISBN:0721601464]
|xref=BTO:0000130;;FMA:62860
|is_a=CL:0000094
|synonym="neutrocyte" EXACT [];;"neutrophil leucocyte" EXACT [];;"neutrophil leukocyte" EXACT [];;"neutrophilic leucocyte" EXACT [];;"neutrophilic leukocyte" EXACT [];;"PMN" BROAD [];;"poly" BROAD [];;"polymorphonuclear leucocyte" BROAD [];;"polymorphonuclear leukocyte" BROAD [];;"polymorphonuclear neutrophil" BROAD [];;"polynuclear neutrophilic leucocyte" BROAD [];;"polynuclear neutrophilic leukocyte" BROAD []
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Any of the immature or mature forms of a granular leukocyte that in its mature form has a nucleus with three to five lobes connected by slender threads of chromatin, and cytoplasm containing fine inconspicuous granules and stainable by neutral dyes." [GOC:add, GOC:amm, GOC:tfm, ISBN:0721601464]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0000775
|is_a=CL:0000094
|is_obsolete=
|located_in=
|located_in=
|name=neutrophil
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|subset=
|synonym="neutrocyte" EXACT [];;"neutrophil leucocyte" EXACT [];;"neutrophil leukocyte" EXACT [];;"neutrophilic leucocyte" EXACT [];;"neutrophilic leukocyte" EXACT [];;"PMN" BROAD [];;"poly" BROAD [];;"polymorphonuclear leucocyte" BROAD [];;"polymorphonuclear leukocyte" BROAD [];;"polymorphonuclear neutrophil" BROAD [];;"polynuclear neutrophilic leucocyte" BROAD [];;"polynuclear neutrophilic leukocyte" BROAD []
|union_of=
|xref=BTO:0000130;;FMA:62860
}}
}}

Latest revision as of 16:36, 12 September 2014

Name:neutrophil
Namespace:FANTOM
Definition:"Any of the immature or mature forms of a granular leukocyte that in its mature form has a nucleus with three to five lobes connected by slender threads of chromatin, and cytoplasm containing fine inconspicuous granules and stainable by neutral dyes." [GOC:add, GOC:amm, GOC:tfm, ISBN:0721601464]
Xrefs:
links:

BTO:0000130

FMA:62860
Synonyms: "neutrocyte" EXACT []
"neutrophil leucocyte" EXACT []
"neutrophil leukocyte" EXACT []
"neutrophilic leucocyte" EXACT []
"neutrophilic leukocyte" EXACT []
"PMN" BROAD []
"poly" BROAD []
"polymorphonuclear leucocyte" BROAD []
"polymorphonuclear leukocyte" BROAD []
"polymorphonuclear neutrophil" BROAD []
"polynuclear neutrophilic leucocyte" BROAD []
"polynuclear neutrophilic leukocyte" BROAD []


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000094(granulocyte)



Children


derives from:FF:0000122 (human neutrophil sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000775 (neutrophil), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.79e-195FFCP PHASE1:Hg19::chr1:17418980..17418990,-#_871af0b89492d5c9d15104e0740c9bfcp@chr1:17418980..17418990, -
2.79e-195FFCP PHASE1:Hg19::chr7:149462556..149462563,-#_871af0b89492d5c9d15104e0740c9bfcp@chr7:149462556..149462563, -
2.79e-195FFCP PHASE2:Hg19::chr7:149462556..149462563,-#_871af0b89492d5c9d15104e0740c9bfcp@chr7:149462556..149462563, -
2.79e-195FFCP PHASE2:Hg19::chr1:17418980..17418990,-#_871af0b89492d5c9d15104e0740c9bfcp@chr1:17418980..17418990, -
2.79e-195FFCP PHASE1:Hg19::chr2:102608625..102608637,-#_871af0b89492d5c9d15104e0740c9bfcp@chr2:102608625..102608637, -
2.79e-195FFCP PHASE2:Hg19::chr2:102608625..102608637,-#_871af0b89492d5c9d15104e0740c9bfcp@chr2:102608625..102608637, -
3.27e-147FFCP PHASE1:Hg19::chr2:103043089..103043100,+#_ea26c3aa3a24283383db7de1f1f0b96ap@chr2:103043089..103043100, +
3.27e-147FFCP PHASE1:Hg19::chr7:105904960..105904973,-#_ea26c3aa3a24283383db7de1f1f0b96ap@chr7:105904960..105904973, -
3.27e-147FFCP PHASE2:Hg19::chr7:105917805..105917815,-#_ea26c3aa3a24283383db7de1f1f0b96ap@chr7:105917805..105917815, -
3.27e-147FFCP PHASE1:Hg19::chr7:105917805..105917815,-#_ea26c3aa3a24283383db7de1f1f0b96ap@chr7:105917805..105917815, -
3.27e-147FFCP PHASE1:Hg19::chr8:142317989..142317992,-#_ea26c3aa3a24283383db7de1f1f0b96ap@chr8:142317989..142317992, -
3.27e-147FFCP PHASE2:Hg19::chr7:105904960..105904973,-#_ea26c3aa3a24283383db7de1f1f0b96ap@chr7:105904960..105904973, -
3.27e-147FFCP PHASE1:Hg19::chr7:105921112..105921121,-#_ea26c3aa3a24283383db7de1f1f0b96ap@chr7:105921112..105921121, -
3.27e-147FFCP PHASE2:Hg19::chr7:112062506..112062509,+#_ea26c3aa3a24283383db7de1f1f0b96ap@chr7:112062506..112062509, +
3.27e-147FFCP PHASE1:Hg19::chr6:11360439..11360452,-#_ea26c3aa3a24283383db7de1f1f0b96ap@chr6:11360439..11360452, -
3.27e-147FFCP PHASE2:Hg19::chr2:70274655..70274660,-#_ea26c3aa3a24283383db7de1f1f0b96ap@chr2:70274655..70274660, -
3.27e-147FFCP PHASE2:Hg19::chr2:103043089..103043100,+#_ea26c3aa3a24283383db7de1f1f0b96ap@chr2:103043089..103043100, +
3.27e-147FFCP PHASE1:Hg19::chr10:89648443..89648447,+#_ea26c3aa3a24283383db7de1f1f0b96ap@chr10:89648443..89648447, +
3.27e-147FFCP PHASE1:Hg19::chr7:105903055..105903058,-#_ea26c3aa3a24283383db7de1f1f0b96ap@chr7:105903055..105903058, -
3.27e-147FFCP PHASE2:Hg19::chr6:11351100..11351118,-#_ea26c3aa3a24283383db7de1f1f0b96ap@chr6:11351100..11351118, -
3.27e-147FFCP PHASE2:Hg19::chr7:105921112..105921121,-#_ea26c3aa3a24283383db7de1f1f0b96ap@chr7:105921112..105921121, -
3.27e-147FFCP PHASE2:Hg19::chr7:105903055..105903058,-#_ea26c3aa3a24283383db7de1f1f0b96ap@chr7:105903055..105903058, -
3.27e-147FFCP PHASE2:Hg19::chr8:142317989..142317992,-#_ea26c3aa3a24283383db7de1f1f0b96ap@chr8:142317989..142317992, -
3.27e-147FFCP PHASE1:Hg19::chr7:105917431..105917440,-#_ea26c3aa3a24283383db7de1f1f0b96ap@chr7:105917431..105917440, -
3.27e-147FFCP PHASE1:Hg19::chr6:11332062..11332081,-#_ea26c3aa3a24283383db7de1f1f0b96ap@chr6:11332062..11332081, -
3.27e-147FFCP PHASE2:Hg19::chr10:89648443..89648447,+#_ea26c3aa3a24283383db7de1f1f0b96ap@chr10:89648443..89648447, +
3.27e-147FFCP PHASE1:Hg19::chr2:70274655..70274660,-#_ea26c3aa3a24283383db7de1f1f0b96ap@chr2:70274655..70274660, -
3.27e-147FFCP PHASE1:Hg19::chr6:11351100..11351118,-#_ea26c3aa3a24283383db7de1f1f0b96ap@chr6:11351100..11351118, -
3.27e-147FFCP PHASE2:Hg19::chr6:11332062..11332081,-#_ea26c3aa3a24283383db7de1f1f0b96ap@chr6:11332062..11332081, -
3.27e-147FFCP PHASE2:Hg19::chr7:105917431..105917440,-#_ea26c3aa3a24283383db7de1f1f0b96ap@chr7:105917431..105917440, -
3.27e-147FFCP PHASE1:Hg19::chr7:112062506..112062509,+#_ea26c3aa3a24283383db7de1f1f0b96ap@chr7:112062506..112062509, +
3.27e-147FFCP PHASE2:Hg19::chr6:11360439..11360452,-#_ea26c3aa3a24283383db7de1f1f0b96ap@chr6:11360439..11360452, -
5.41e-147FFCP PHASE1:Hg19::chr7:112062482..112062489,+#_d0cedca3613c3c25466d5d4191032553p@chr7:112062482..112062489, +
5.41e-147FFCP PHASE2:Hg19::chr7:112062482..112062489,+#_d0cedca3613c3c25466d5d4191032553p@chr7:112062482..112062489, +
8.93e-147FFCP PHASE2:Hg19::chr1:21904038..21904043,+#_1b38279c2b2b8ba34492f2f6d8721b99p@chr1:21904038..21904043, +
8.93e-147FFCP PHASE1:Hg19::chr21:35570862..35570865,+#_1b38279c2b2b8ba34492f2f6d8721b99p@chr21:35570862..35570865, +
8.93e-147FFCP PHASE1:Hg19::chr3:134309990..134309996,-#_1b38279c2b2b8ba34492f2f6d8721b99p@chr3:134309990..134309996, -
8.93e-147FFCP PHASE2:Hg19::chr3:134309990..134309996,-#_1b38279c2b2b8ba34492f2f6d8721b99p@chr3:134309990..134309996, -
8.93e-147FFCP PHASE2:Hg19::chr21:35570862..35570865,+#_1b38279c2b2b8ba34492f2f6d8721b99p@chr21:35570862..35570865, +
8.93e-147FFCP PHASE1:Hg19::chr1:21904038..21904043,+#_1b38279c2b2b8ba34492f2f6d8721b99p@chr1:21904038..21904043, +
1.47e-146FFCP PHASE1:Hg19::chr17:57785324..57785365,+#_41e4a750d9194fa8c35e733953dbd02dp@chr17:57785324..57785365, +
1.47e-146FFCP PHASE2:Hg19::chr17:57785324..57785365,+#_41e4a750d9194fa8c35e733953dbd02dp@chr17:57785324..57785365, +
8.98e-131FFCP PHASE2:Hg19::chr2:121011894..121011895,-#_eba313c3be7857868bf130e7c628ed38p@chr2:121011894..121011895, -
8.98e-131FFCP PHASE1:Hg19::chr2:121011894..121011895,-#_eba313c3be7857868bf130e7c628ed38p@chr2:121011894..121011895, -
2.33e-118FFCP PHASE2:Hg19::chr20:1545770..1545777,-#_79d541ddab00744ff3a871f84e974b9ap@chr20:1545770..1545777, -
2.33e-118FFCP PHASE1:Hg19::chr1:208712283..208712291,+#_79d541ddab00744ff3a871f84e974b9ap@chr1:208712283..208712291, +
2.33e-118FFCP PHASE1:Hg19::chr20:1545770..1545777,-#_79d541ddab00744ff3a871f84e974b9ap@chr20:1545770..1545777, -
2.33e-118FFCP PHASE1:Hg19::chr2:143908003..143908010,-#_79d541ddab00744ff3a871f84e974b9ap@chr2:143908003..143908010, -
2.33e-118FFCP PHASE2:Hg19::chr8:97657886..97657892,+#_79d541ddab00744ff3a871f84e974b9ap@chr8:97657886..97657892, +
2.33e-118FFCP PHASE1:Hg19::chr7:112062470..112062479,+#_79d541ddab00744ff3a871f84e974b9ap@chr7:112062470..112062479, +
2.33e-118FFCP PHASE2:Hg19::chr7:105917490..105917499,-#_79d541ddab00744ff3a871f84e974b9ap@chr7:105917490..105917499, -
2.33e-118FFCP PHASE2:Hg19::chr7:102071349..102071355,-#_79d541ddab00744ff3a871f84e974b9ap@chr7:102071349..102071355, -
2.33e-118FFCP PHASE1:Hg19::chr7:105917490..105917499,-#_79d541ddab00744ff3a871f84e974b9ap@chr7:105917490..105917499, -
2.33e-118FFCP PHASE2:Hg19::chr2:143908003..143908010,-#_79d541ddab00744ff3a871f84e974b9ap@chr2:143908003..143908010, -
2.33e-118FFCP PHASE2:Hg19::chr16:3107107..3107117,+#_79d541ddab00744ff3a871f84e974b9ap@chr16:3107107..3107117, +
2.33e-118FFCP PHASE2:Hg19::chr7:112062470..112062479,+#_79d541ddab00744ff3a871f84e974b9ap@chr7:112062470..112062479, +
2.33e-118FFCP PHASE1:Hg19::chr20:55012583..55012585,+#_79d541ddab00744ff3a871f84e974b9ap@chr20:55012583..55012585, +
2.33e-118FFCP PHASE1:Hg19::chr6:11313936..11313940,-#_79d541ddab00744ff3a871f84e974b9ap@chr6:11313936..11313940, -
2.33e-118FFCP PHASE1:Hg19::chr16:3107107..3107117,+#_79d541ddab00744ff3a871f84e974b9ap@chr16:3107107..3107117, +
2.33e-118FFCP PHASE2:Hg19::chr1:208712283..208712291,+#_79d541ddab00744ff3a871f84e974b9ap@chr1:208712283..208712291, +
2.33e-118FFCP PHASE1:Hg19::chr8:97657886..97657892,+#_79d541ddab00744ff3a871f84e974b9ap@chr8:97657886..97657892, +
2.33e-118FFCP PHASE2:Hg19::chr20:55012583..55012585,+#_79d541ddab00744ff3a871f84e974b9ap@chr20:55012583..55012585, +
2.33e-118FFCP PHASE2:Hg19::chr19:14774330..14774343,-#_79d541ddab00744ff3a871f84e974b9ap@chr19:14774330..14774343, -
2.33e-118FFCP PHASE1:Hg19::chr7:102071349..102071355,-#_79d541ddab00744ff3a871f84e974b9ap@chr7:102071349..102071355, -
2.33e-118FFCP PHASE2:Hg19::chr1:36938272..36938282,-#_79d541ddab00744ff3a871f84e974b9ap35@CSF3R
2.33e-118FFCP PHASE2:Hg19::chr6:11313936..11313940,-#_79d541ddab00744ff3a871f84e974b9ap@chr6:11313936..11313940, -
2.33e-118FFCP PHASE1:Hg19::chr1:36938272..36938282,-#_79d541ddab00744ff3a871f84e974b9ap35@CSF3R
2.33e-118FFCP PHASE1:Hg19::chr19:14774330..14774343,-#_79d541ddab00744ff3a871f84e974b9ap@chr19:14774330..14774343, -
3.48e-118FFCP PHASE1:Hg19::chr20:56861864..56861875,-#_8101d934d0e9dad8c1f55052b5ef3c22p@chr20:56861864..56861875, -
3.48e-118FFCP PHASE2:Hg19::chr2:120967895..120967903,-#_8101d934d0e9dad8c1f55052b5ef3c22p@chr2:120967895..120967903, -
3.48e-118FFCP PHASE2:Hg19::chr20:56861880..56861893,-#_8101d934d0e9dad8c1f55052b5ef3c22p@chr20:56861880..56861893, -
3.48e-118FFCP PHASE2:Hg19::chr20:56861864..56861875,-#_8101d934d0e9dad8c1f55052b5ef3c22p@chr20:56861864..56861875, -
3.48e-118FFCP PHASE1:Hg19::chr2:120967895..120967903,-#_8101d934d0e9dad8c1f55052b5ef3c22p@chr2:120967895..120967903, -
3.48e-118FFCP PHASE1:Hg19::chr20:56861880..56861893,-#_8101d934d0e9dad8c1f55052b5ef3c22p@chr20:56861880..56861893, -
5.2e-118FFCP PHASE2:Hg19::chr2:103039548..103039555,+#_03d495d6c6a946792b82098cf3997b11p9@IL18RAP
5.2e-118FFCP PHASE2:Hg19::chr8:97669948..97669957,+#_03d495d6c6a946792b82098cf3997b11p@chr8:97669948..97669957, +
5.2e-118FFCP PHASE2:Hg19::chr17:80187468..80187472,+#_03d495d6c6a946792b82098cf3997b11p@chr17:80187468..80187472, +
5.2e-118FFCP PHASE2:Hg19::chr12:8720206..8720211,-#_03d495d6c6a946792b82098cf3997b11p4@ENST00000542819
5.2e-118FFCP PHASE1:Hg19::chr12:8720206..8720211,-#_03d495d6c6a946792b82098cf3997b11p4@ENST00000542819
5.2e-118FFCP PHASE1:Hg19::chr8:97669948..97669957,+#_03d495d6c6a946792b82098cf3997b11p@chr8:97669948..97669957, +
5.2e-118FFCP PHASE1:Hg19::chr2:103039548..103039555,+#_03d495d6c6a946792b82098cf3997b11p9@IL18RAP
5.2e-118FFCP PHASE1:Hg19::chr1:27155357..27155367,+#_03d495d6c6a946792b82098cf3997b11p@chr1:27155357..27155367, +
5.2e-118FFCP PHASE2:Hg19::chr1:27155357..27155367,+#_03d495d6c6a946792b82098cf3997b11p@chr1:27155357..27155367, +
5.2e-118FFCP PHASE1:Hg19::chr2:103039589..103039596,+#_03d495d6c6a946792b82098cf3997b11p8@IL18RAP
5.2e-118FFCP PHASE1:Hg19::chr17:80187468..80187472,+#_03d495d6c6a946792b82098cf3997b11p@chr17:80187468..80187472, +
5.2e-118FFCP PHASE2:Hg19::chr2:103039589..103039596,+#_03d495d6c6a946792b82098cf3997b11p8@IL18RAP
7.78e-118FFCP PHASE1:Hg19::chr13:21050019..21050027,-#_884a33c99b0459304383465557a433e9p@chr13:21050019..21050027, -
7.78e-118FFCP PHASE2:Hg19::chr13:21050019..21050027,-#_884a33c99b0459304383465557a433e9p@chr13:21050019..21050027, -
7.78e-118FFCP PHASE2:Hg19::chr14:88469399..88469404,-#_884a33c99b0459304383465557a433e9p@chr14:88469399..88469404, -
7.78e-118FFCP PHASE1:Hg19::chr14:88469399..88469404,-#_884a33c99b0459304383465557a433e9p@chr14:88469399..88469404, -
1.16e-117FFCP PHASE1:Hg19::chr1:208712347..208712354,+#_b2a05e79e896353c747e38436ad6c1f7p@chr1:208712347..208712354, +
1.16e-117FFCP PHASE2:Hg19::chr21:37502917..37502925,+#_b2a05e79e896353c747e38436ad6c1f7p5@MEMO1P1
1.16e-117FFCP PHASE2:Hg19::chr2:120967889..120967892,-#_b2a05e79e896353c747e38436ad6c1f7p@chr2:120967889..120967892, -
1.16e-117FFCP PHASE1:Hg19::chr21:37502917..37502925,+#_b2a05e79e896353c747e38436ad6c1f7p5@MEMO1P1
1.16e-117FFCP PHASE2:Hg19::chr1:208712347..208712354,+#_b2a05e79e896353c747e38436ad6c1f7p@chr1:208712347..208712354, +
1.16e-117FFCP PHASE2:Hg19::chr2:102618480..102618529,+#_b2a05e79e896353c747e38436ad6c1f7p11@IL1R2
1.16e-117FFCP PHASE2:Hg19::chr2:70246139..70246146,-#_b2a05e79e896353c747e38436ad6c1f7p@chr2:70246139..70246146, -
1.16e-117FFCP PHASE1:Hg19::chr2:70246139..70246146,-#_b2a05e79e896353c747e38436ad6c1f7p@chr2:70246139..70246146, -
1.16e-117FFCP PHASE2:Hg19::chr2:103106370..103106380,+#_b2a05e79e896353c747e38436ad6c1f7p@chr2:103106370..103106380, +
1.16e-117FFCP PHASE1:Hg19::chr2:102618480..102618529,+#_b2a05e79e896353c747e38436ad6c1f7p11@IL1R2

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